Callicarpa rubella f. crenata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnR-ACG · OR548043.1 · 2,042–2,115 bp · −
rrn5 · OR548043.1 · 2,359–2,479 bp · −
rrn4.5 · OR548043.1 · 2,735–2,837 bp · −
rrn23 · OR548043.1 · 2,937–5,745 bp · −
trnA-UGC · OR548043.1 · 5,914–6,798 bp · −
trnI-GAU · OR548043.1 · 6,863–7,883 bp · −
rrn16 · OR548043.1 · 8,182–9,672 bp · −
trnV-GAC · OR548043.1 · 9,918–9,989 bp · −
ycf15 · OR548043.1 · 16,286–16,534 bp · −
ycf2 · OR548043.1 · 16,616–23,476 bp · −
trnH-GUG · OR548043.1 · 25,704–25,777 bp · −
psbA · OR548043.1 · 26,128–27,186 bp · −
trnK-UUU · OR548043.1 · 27,439–30,011 bp · −
matK · OR548043.1 · 27,746–29,269 bp · −
rps16 · OR548043.1 · 30,878–32,011 bp · −
trnQ-UUG · OR548043.1 · 33,150–33,221 bp · −
trnS-GCU · OR548043.1 · 34,360–34,447 bp · −
atpA · OR548043.1 · 36,268–37,791 bp · −
atpF · OR548043.1 · 37,859–39,105 bp · −
atpH · OR548043.1 · 39,476–39,721 bp · −
atpI · OR548043.1 · 40,730–41,473 bp · −
rps2 · OR548043.1 · 41,704–42,414 bp · −
rpoC · OR548043.1 · 42,631–46,812 bp · −
rpoC1 · OR548043.1 · 46,967–49,771 bp · −
rpoB · OR548043.1 · 49,798–53,010 bp · −
psbM · OR548043.1 · 56,100–56,204 bp · −
trnD-GUC · OR548043.1 · 56,726–56,799 bp · −
trnY-GUA · OR548043.1 · 56,908–56,991 bp · −
trnE-UUC · OR548043.1 · 57,051–57,123 bp · −
trnS-UGA · OR548043.1 · 61,803–61,895 bp · −
rps14 · OR548043.1 · 63,130–63,432 bp · −
psaB · OR548043.1 · 63,555–65,759 bp · −
psaA · OR548043.1 · 65,785–68,031 bp · −
ycf3 · OR548043.1 · 68,740–70,694 bp · −
rps4 · OR548043.1 · 71,896–72,501 bp · −
trnT-UGU · OR548043.1 · 72,868–72,940 bp · −
ndhJ · OR548043.1 · 75,250–75,726 bp · −
ndhK · OR548043.1 · 75,827–76,504 bp · −
ndhC · OR548043.1 · 76,558–76,920 bp · −
trnV-UAC · OR548043.1 · 78,109–78,761 bp · −
atpE · OR548043.1 · 79,223–79,624 bp · −
atpB · OR548043.1 · 79,621–81,117 bp · −
psbJ · OR548043.1 · 90,725–90,847 bp · −
psbL · OR548043.1 · 90,981–91,097 bp · −
psbF · OR548043.1 · 91,121–91,240 bp · −
psbE · OR548043.1 · 91,255–91,506 bp · −
trnW-CCA · OR548043.1 · 92,944–93,017 bp · −
trnP-UGG · OR548043.1 · 93,179–93,252 bp · −
rpl20 · OR548043.1 · 95,169–95,555 bp · −
rps12 · OR548043.1 · 96,371–96,496 bp · −
rps12 · OR548043.1 · 123,872–124,665 bp · −
clpP · OR548043.1 · 96,630–98,573 bp · −
psbN · OR548043.1 · 100,915–101,046 bp · −
rpoA · OR548043.1 · 104,467–105,480 bp · −
rps11 · OR548043.1 · 105,552–105,968 bp · −
rpl36 · OR548043.1 · 106,070–106,183 bp · −
infA · OR548043.1 · 106,279–106,512 bp · −
rps8 · OR548043.1 · 106,637–107,041 bp · −
rpl14 · OR548043.1 · 107,214–107,582 bp · −
rpl16 · OR548043.1 · 107,709–109,011 bp · −
rps3 · OR548043.1 · 109,154–109,816 bp · −
rpl22 · OR548043.1 · 109,826–110,263 bp · −
rps19 · OR548043.1 · 110,323–110,601 bp · −
rpl2 · OR548043.1 · 110,657–112,148 bp · −
rpl23 · OR548043.1 · 112,167–112,448 bp · −
trnI-CAU · OR548043.1 · 112,614–112,687 bp · −
trnL-CAA · OR548043.1 · 120,237–120,317 bp · −
ndhB · OR548043.1 · 120,865–123,076 bp · −
rps7 · OR548043.1 · 123,351–123,818 bp · −
trnN-GUU · OR548043.1 · 134,790–134,861 bp · −
ndhF · OR548043.1 · 136,266–138,509 bp · −
ndhD · OR548043.1 · 141,388–142,776 bp · −
psaC · OR548043.1 · 143,011–143,256 bp · −
ndhE · OR548043.1 · 143,487–143,792 bp · −
ndhG · OR548043.1 · 144,006–144,536 bp · −
ndhI · OR548043.1 · 144,886–145,392 bp · −
ndhA · OR548043.1 · 145,468–147,652 bp · −
ndhH · OR548043.1 · 147,654–148,835 bp · −
rps15 · OR548043.1 · 148,932–149,204 bp · −
trnN-GUU · OR548043.1 · 1,401–1,472 bp · +
rps7 · OR548043.1 · 12,444–12,911 bp · +
ndhB · OR548043.1 · 13,186–15,397 bp · +
trnL-CAA · OR548043.1 · 15,945–16,025 bp · +
trnI-CAU · OR548043.1 · 23,575–23,648 bp · +
rpl23 · OR548043.1 · 23,814–24,095 bp · +
rpl2 · OR548043.1 · 24,114–25,605 bp · +
psbK · OR548043.1 · 33,555–33,740 bp · +
psbI · OR548043.1 · 34,132–34,242 bp · +
trnG-UCC · OR548043.1 · 35,155–35,915 bp · +
trnR-UCU · OR548043.1 · 36,092–36,163 bp · +
trnC-GCA · OR548043.1 · 54,186–54,256 bp · +
petN · OR548043.1 · 55,088–55,177 bp · +
trnT-GGU · OR548043.1 · 57,680–57,751 bp · +
psbD · OR548043.1 · 59,131–60,192 bp · +
psbC · OR548043.1 · 60,140–60,787 bp · +
psbZ · OR548043.1 · 62,225–62,413 bp · +
trnG-GCC · OR548043.1 · 62,689–62,759 bp · +
trnS-GGA · OR548043.1 · 71,529–71,615 bp · +
trnL-UAA · OR548043.1 · 73,610–74,187 bp · +
trnF-GAA · OR548043.1 · 74,528–74,600 bp · +
trnM-CAU · OR548043.1 · 78,943–79,015 bp · +
rbcL · OR548043.1 · 81,903–83,342 bp · +
accD · OR548043.1 · 83,958–85,502 bp · +
psaI · OR548043.1 · 86,205–86,315 bp · +
ycf4 · OR548043.1 · 86,755–87,309 bp · +
cemA · OR548043.1 · 87,957–88,646 bp · +
petA · OR548043.1 · 88,836–89,798 bp · +
petL · OR548043.1 · 92,438–92,533 bp · +
petG · OR548043.1 · 92,708–92,821 bp · +
psaJ · OR548043.1 · 93,644–93,778 bp · +
rpl33 · OR548043.1 · 94,258–94,458 bp · +
rps18 · OR548043.1 · 94,629–94,934 bp · +
psbB · OR548043.1 · 99,028–100,554 bp · +
psbT · OR548043.1 · 100,747–100,854 bp · +
psbH · OR548043.1 · 101,134–101,373 bp · +
petB · OR548043.1 · 101,498–102,877 bp · +
petD · OR548043.1 · 103,066–104,290 bp · +
ycf2 · OR548043.1 · 112,786–119,646 bp · +
ycf15 · OR548043.1 · 119,728–119,976 bp · +
trnV-GAC · OR548043.1 · 126,273–126,344 bp · +
rrn16 · OR548043.1 · 126,590–128,080 bp · +
trnI-GAU · OR548043.1 · 128,379–129,399 bp · +
trnA-UGC · OR548043.1 · 129,464–130,348 bp · +
rrn23 · OR548043.1 · 130,517–133,325 bp · +
rrn4.5 · OR548043.1 · 133,425–133,527 bp · +
rrn5 · OR548043.1 · 133,783–133,903 bp · +
trnR-ACG · OR548043.1 · 134,147–134,220 bp · +
rpl32 · OR548043.1 · 139,028–139,204 bp · +
trnL-UAG · OR548043.1 · 139,986–140,065 bp · +
ccsA · OR548043.1 · 140,150–141,121 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa rubella f. crenata
ANNOTATED PLASTOME
OR548043.1
154,067 bp · 129 genes
Gene function
Transfer RNA
Ribosomal RNA
Ribosomal protein
NADH dehydrogenase
Other
Photosystem II
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
0 38517 77034 115550 154067 bp
Forward strand 5′ → 3′
trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA
trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2 trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
130 local segments
Gene Type Group Strand Start End Length
trnN-GUU gene + 1401 1472 72 Locate
trnR-ACG gene − 2042 2115 74 Locate
rrn5 gene − 2359 2479 121 Locate
rrn4.5 gene − 2735 2837 103 Locate
rrn23 gene − 2937 5745 2809 Locate
trnA-UGC gene − 5914 6798 885 Locate
trnI-GAU gene − 6863 7883 1021 Locate
rrn16 gene − 8182 9672 1491 Locate
trnV-GAC gene − 9918 9989 72 Locate
rps7 gene + 12444 12911 468 Locate
ndhB gene + 13186 15397 2212 Locate
trnL-CAA gene + 15945 16025 81 Locate
ycf15 gene − 16286 16534 249 Locate
ycf2 gene − 16616 23476 6861 Locate
trnI-CAU gene + 23575 23648 74 Locate
rpl23 gene + 23814 24095 282 Locate
rpl2 gene + 24114 25605 1492 Locate
trnH-GUG gene − 25704 25777 74 Locate
psbA gene − 26128 27186 1059 Locate
trnK-UUU gene − 27439 30011 2573 Locate
matK gene − 27746 29269 1524 Locate
rps16 gene − 30878 32011 1134 Locate
trnQ-UUG gene − 33150 33221 72 Locate
psbK gene + 33555 33740 186 Locate
psbI gene + 34132 34242 111 Locate
trnS-GCU gene − 34360 34447 88 Locate
trnG-UCC gene + 35155 35915 761 Locate
trnR-UCU gene + 36092 36163 72 Locate
atpA gene − 36268 37791 1524 Locate
atpF gene − 37859 39105 1247 Locate
atpH gene − 39476 39721 246 Locate
atpI gene − 40730 41473 744 Locate
rps2 gene − 41704 42414 711 Locate
rpoC gene − 42631 46812 4182 Locate
rpoC1 gene − 46967 49771 2805 Locate
rpoB gene − 49798 53010 3213 Locate
trnC-GCA gene + 54186 54256 71 Locate
petN gene + 55088 55177 90 Locate
psbM gene − 56100 56204 105 Locate
trnD-GUC gene − 56726 56799 74 Locate
trnY-GUA gene − 56908 56991 84 Locate
trnE-UUC gene − 57051 57123 73 Locate
trnT-GGU gene + 57680 57751 72 Locate
psbD gene + 59131 60192 1062 Locate
psbC gene + 60140 60787 648 Locate
trnS-UGA gene − 61803 61895 93 Locate
psbZ gene + 62225 62413 189 Locate
trnG-GCC gene + 62689 62759 71 Locate
rps14 gene − 63130 63432 303 Locate
psaB gene − 63555 65759 2205 Locate
psaA gene − 65785 68031 2247 Locate
ycf3 gene − 68740 70694 1955 Locate
trnS-GGA gene + 71529 71615 87 Locate
rps4 gene − 71896 72501 606 Locate
trnT-UGU gene − 72868 72940 73 Locate
trnL-UAA gene + 73610 74187 578 Locate
trnF-GAA gene + 74528 74600 73 Locate
ndhJ gene − 75250 75726 477 Locate
ndhK gene − 75827 76504 678 Locate
ndhC gene − 76558 76920 363 Locate
trnV-UAC gene − 78109 78761 653 Locate
trnM-CAU gene + 78943 79015 73 Locate
atpE gene − 79223 79624 402 Locate
atpB gene − 79621 81117 1497 Locate
rbcL gene + 81903 83342 1440 Locate
accD gene + 83958 85502 1545 Locate
psaI gene + 86205 86315 111 Locate
ycf4 gene + 86755 87309 555 Locate
cemA gene + 87957 88646 690 Locate
petA gene + 88836 89798 963 Locate
psbJ gene − 90725 90847 123 Locate
psbL gene − 90981 91097 117 Locate
psbF gene − 91121 91240 120 Locate
psbE gene − 91255 91506 252 Locate
petL gene + 92438 92533 96 Locate
petG gene + 92708 92821 114 Locate
trnW-CCA gene − 92944 93017 74 Locate
trnP-UGG gene − 93179 93252 74 Locate
psaJ gene + 93644 93778 135 Locate
rpl33 gene + 94258 94458 201 Locate
rps18 gene + 94629 94934 306 Locate
rpl20 gene − 95169 95555 387 Locate
rps12 gene − 96371 96496 126 Locate
clpP gene − 96630 98573 1944 Locate
psbB gene + 99028 100554 1527 Locate
psbT gene + 100747 100854 108 Locate
psbN gene − 100915 101046 132 Locate
psbH gene + 101134 101373 240 Locate
petB gene + 101498 102877 1380 Locate
petD gene + 103066 104290 1225 Locate
rpoA gene − 104467 105480 1014 Locate
rps11 gene − 105552 105968 417 Locate
rpl36 gene − 106070 106183 114 Locate
infA gene − 106279 106512 234 Locate
rps8 gene − 106637 107041 405 Locate
rpl14 gene − 107214 107582 369 Locate
rpl16 gene − 107709 109011 1303 Locate
rps3 gene − 109154 109816 663 Locate
rpl22 gene − 109826 110263 438 Locate
rps19 gene − 110323 110601 279 Locate
rpl2 gene − 110657 112148 1492 Locate
rpl23 gene − 112167 112448 282 Locate
trnI-CAU gene − 112614 112687 74 Locate
ycf2 gene + 112786 119646 6861 Locate
ycf15 gene + 119728 119976 249 Locate
trnL-CAA gene − 120237 120317 81 Locate
ndhB gene − 120865 123076 2212 Locate
rps7 gene − 123351 123818 468 Locate
rps12 gene − 123872 124665 794 Locate
trnV-GAC gene + 126273 126344 72 Locate
rrn16 gene + 126590 128080 1491 Locate
trnI-GAU gene + 128379 129399 1021 Locate
trnA-UGC gene + 129464 130348 885 Locate
rrn23 gene + 130517 133325 2809 Locate
rrn4.5 gene + 133425 133527 103 Locate
rrn5 gene + 133783 133903 121 Locate
trnR-ACG gene + 134147 134220 74 Locate
trnN-GUU gene − 134790 134861 72 Locate
ndhF gene − 136266 138509 2244 Locate
rpl32 gene + 139028 139204 177 Locate
trnL-UAG gene + 139986 140065 80 Locate
ccsA gene + 140150 141121 972 Locate
ndhD gene − 141388 142776 1389 Locate
psaC gene − 143011 143256 246 Locate
ndhE gene − 143487 143792 306 Locate
ndhG gene − 144006 144536 531 Locate
ndhI gene − 144886 145392 507 Locate
ndhA gene − 145468 147652 2185 Locate
ndhH gene − 147654 148835 1182 Locate
rps15 gene − 148932 149204 273 Locate
Status Available
Accession OR548043.1
Length 154,067 bp
GC content 38.1%
Annotated genes 129
Gene sequence records 7
Translation Rna 36 Ribosomal Rna 8 Ribosomal Protein 25 Nad Dehydrogenase 12 Other 13 Photosystem Ii 15 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources