Functional gene and locus index
Gene lookup
Search functional gene panels and organelle coordinate evidence without treating family-level summaries as stable gene loci.
Functional gene panels
Open a record to inspect its functional annotation, accessions, sequences and coordinate evidence.
| Gene | Pathway | Localization | Species with DNA | Evidence | Actions |
|---|---|---|---|---|---|
DXS1-deoxy-D-xylulose-5-phosphate synthase | MEP isoprenoid pathway | chloroplast stroma | 0 | Reference-only | |
DXR1-deoxy-D-xylulose-5-phosphate reductoisomerase | MEP isoprenoid pathway | chloroplast stroma | 0 | Reference-only | |
HMGR3-hydroxy-3-methylglutaryl-CoA reductase | MVA pathway | cytosol / ER | 0 | Reference-only | |
PALPhenylalanine ammonia-lyase | Phenylpropanoid core | cytosol | 0 | Reference-only | |
C4HCinnamate 4-hydroxylase | Phenylpropanoid core | ER membrane | 0 | Reference-only | |
4CL4-coumarate-CoA ligase | Phenylpropanoid core | cytosol | 0 | Reference-only | |
TATTyrosine aminotransferase | Rosmarinic acid branch | cytosol | 0 | Reference-only | |
HPPRHydroxyphenylpyruvate reductase | Rosmarinic acid branch | cytosol | 0 | Reference-only | |
RASRosmarinic acid synthase | Rosmarinic acid branch | cytosol | 0 | Reference-only | |
CYP76AH1Cytochrome P450 CYP76AH1 | Diterpenoid / tanshinone branch | ER membrane | 0 | Reference-only | |
rbcLRibulose bisphosphate carboxylase large subunit | Photosynthesis marker | chloroplast genome | 765 | Available | |
cox1Cytochrome c oxidase subunit 1 | Respiration marker | mitochondrial genome | 26 | Available |
Organelle coordinate evidence
Highest-coverage symbols from published chloroplast and mitochondrial feature annotations.
| Gene symbol | Species | Assemblies | Loci | Chloroplast | Mitochondrial | Record |
|---|---|---|---|---|---|---|
rps12Coordinate-linked feature | 783 | 827 | 1575 | 1523 | 52 | Open evidence |
rps3Coordinate-linked feature | 781 | 824 | 827 | 778 | 49 | Open evidence |
rps4Coordinate-linked feature | 781 | 820 | 820 | 775 | 45 | Open evidence |
rbcLCoordinate-linked feature | 776 | 777 | 778 | 776 | 2 | Open evidence |
rpl16Coordinate-linked feature | 776 | 807 | 807 | 772 | 35 | Open evidence |
rpl23Coordinate-linked feature | 776 | 780 | 1551 | 1546 | 5 | Open evidence |
atpACoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
atpBCoordinate-linked feature | 775 | 776 | 777 | 776 | 1 | Open evidence |
atpECoordinate-linked feature | 775 | 776 | 776 | 775 | 1 | Open evidence |
atpFCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
infACoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
ndhBCoordinate-linked feature | 775 | 776 | 1564 | 1563 | 1 | Open evidence |
ndhCCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
ndhECoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
ndhFCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
ndhGCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
ndhICoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
ndhJCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
petACoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
petGCoordinate-linked feature | 775 | 777 | 777 | 775 | 2 | Open evidence |
petLCoordinate-linked feature | 775 | 777 | 777 | 775 | 2 | Open evidence |
petNCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psaBCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psaCCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psbACoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psbBCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psbCCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psbDCoordinate-linked feature | 775 | 775 | 776 | 776 | 0 | Open evidence |
psbECoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psbFCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psbHCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psbICoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psbKCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psbLCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psbMCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
psbTCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
rpl14Coordinate-linked feature | 775 | 775 | 776 | 776 | 0 | Open evidence |
rpl2Coordinate-linked feature | 775 | 788 | 1555 | 1538 | 17 | Open evidence |
rpl22Coordinate-linked feature | 775 | 775 | 785 | 785 | 0 | Open evidence |
rpl33Coordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
rpoBCoordinate-linked feature | 775 | 775 | 775 | 775 | 0 | Open evidence |
rps14Coordinate-linked feature | 775 | 799 | 799 | 775 | 24 | Open evidence |
rps15Coordinate-linked feature | 775 | 775 | 779 | 779 | 0 | Open evidence |
rps7Coordinate-linked feature | 775 | 780 | 1555 | 1550 | 5 | Open evidence |
rps8Coordinate-linked feature | 775 | 775 | 776 | 776 | 0 | Open evidence |
atpHCoordinate-linked feature | 774 | 774 | 774 | 774 | 0 | Open evidence |
atpICoordinate-linked feature | 774 | 774 | 774 | 774 | 0 | Open evidence |
ccsACoordinate-linked feature | 774 | 774 | 774 | 774 | 0 | Open evidence |
cemACoordinate-linked feature | 774 | 774 | 774 | 774 | 0 | Open evidence |
ndhHCoordinate-linked feature | 774 | 774 | 778 | 778 | 0 | Open evidence |
petDCoordinate-linked feature | 774 | 774 | 775 | 775 | 0 | Open evidence |
psaICoordinate-linked feature | 774 | 774 | 776 | 776 | 0 | Open evidence |
rps11Coordinate-linked feature | 774 | 774 | 774 | 774 | 0 | Open evidence |
matKCoordinate-linked feature | 773 | 773 | 774 | 774 | 0 | Open evidence |
petBCoordinate-linked feature | 773 | 773 | 774 | 774 | 0 | Open evidence |
rpl20Coordinate-linked feature | 773 | 773 | 774 | 774 | 0 | Open evidence |
rpoACoordinate-linked feature | 772 | 772 | 772 | 772 | 0 | Open evidence |
rps2Coordinate-linked feature | 772 | 772 | 772 | 772 | 0 | Open evidence |
ycf1Coordinate-linked feature | 772 | 772 | 1121 | 1121 | 0 | Open evidence |
psaACoordinate-linked feature | 771 | 771 | 771 | 771 | 0 | Open evidence |
Evidence boundary
A functional panel, sequence record and coordinate-linked locus are different evidence types. The interface preserves their original identifiers and does not convert a family summary into a stable locus.