Ajuga ciliata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnR-UCU · MN814853.1 · 1,630–1,701 bp · −
trnG-UCC · MN814853.1 · 1,887–2,647 bp · −
psbI · MN814853.1 · 3,525–3,635 bp · −
psbK · MN814853.1 · 4,047–4,232 bp · −
rpl2 · MN814853.1 · 11,860–13,348 bp · −
rpl23 · MN814853.1 · 13,367–13,648 bp · −
trnI-CAU · MN814853.1 · 13,814–13,887 bp · −
trnL-CAA · MN814853.1 · 21,347–21,427 bp · −
ndhB · MN814853.1 · 21,976–24,188 bp · −
rps7 · MN814853.1 · 24,464–24,931 bp · −
rps12 · MN814853.1 · 24,985–25,781 bp · −
rrn16 · MN814853.1 · 27,659–29,148 bp · −
trnN-GUU · MN814853.1 · 35,821–35,892 bp · −
ccsA · MN814853.1 · 50,042–51,013 bp · −
trnL-UAG · MN814853.1 · 51,107–51,186 bp · −
rpl32 · MN814853.1 · 51,587–51,763 bp · −
ycf1 · MN814853.1 · 54,431–55,585 bp · −
trnR-ACG · MN814853.1 · 56,558–56,631 bp · −
rrn5 · MN814853.1 · 56,884–57,004 bp · −
rrn4.5 · MN814853.1 · 57,234–57,336 bp · −
rrn23 · MN814853.1 · 57,438–60,253 bp · −
trnA-UGC · MN814853.1 · 60,415–61,291 bp · −
trnI-GAU · MN814853.1 · 61,351–62,371 bp · −
rrn16 · MN814853.1 · 62,671–64,160 bp · −
trnV-GAC · MN814853.1 · 64,389–64,460 bp · −
ycf2 · MN814853.1 · 71,079–77,843 bp · −
petD · MN814853.1 · 86,265–87,479 bp · −
petB · MN814853.1 · 87,673–89,005 bp · −
psbH · MN814853.1 · 89,122–89,343 bp · −
psbT · MN814853.1 · 89,646–89,747 bp · −
psbB · MN814853.1 · 89,923–91,449 bp · −
rps18 · MN814853.1 · 95,555–95,860 bp · −
rpl33 · MN814853.1 · 96,041–96,241 bp · −
psaJ · MN814853.1 · 96,714–96,848 bp · −
petG · MN814853.1 · 97,584–97,697 bp · −
petL · MN814853.1 · 97,877–97,972 bp · −
petA · MN814853.1 · 100,555–101,517 bp · −
cemA · MN814853.1 · 101,733–102,422 bp · −
ycf4 · MN814853.1 · 103,075–103,629 bp · −
psaI · MN814853.1 · 104,042–104,152 bp · −
accD · MN814853.1 · 104,607–106,142 bp · −
rbcL · MN814853.1 · 106,812–108,260 bp · −
trnM-CAU · MN814853.1 · 111,155–111,227 bp · −
trnP-GAA · MN814853.1 · 115,210–115,282 bp · −
trnL-UAA · MN814853.1 · 115,602–116,169 bp · −
trnS-GGA · MN814853.1 · 118,155–118,241 bp · −
trnG-GCC · MN814853.1 · 126,611–126,681 bp · −
psbZ · MN814853.1 · 126,949–127,137 bp · −
psbC · MN814853.1 · 127,810–129,231 bp · −
psbD · MN814853.1 · 129,179–130,240 bp · −
trnT-GGU · MN814853.1 · 131,621–131,692 bp · −
petN · MN814853.1 · 133,655–133,744 bp · −
trnC-GCA · MN814853.1 · 134,047–134,117 bp · −
atpA · MN814853.1 · 1–1,524 bp · +
trnS-GCU · MN814853.1 · 3,324–3,411 bp · +
trnQ-UUG · MN814853.1 · 4,562–4,633 bp · +
rps16 · MN814853.1 · 5,454–6,585 bp · +
trnK-UUU · MN814853.1 · 7,486–10,054 bp · +
matK · MN814853.1 · 8,226–9,788 bp · +
psbA · MN814853.1 · 10,287–11,345 bp · +
trnH-GUG · MN814853.1 · 11,670–11,743 bp · +
ycf2 · MN814853.1 · 13,976–20,740 bp · +
rps12 · MN814853.1 · 93,975–94,088 bp · +
trnV-GAC · MN814853.1 · 27,359–27,430 bp · +
trnI-GAU · MN814853.1 · 29,448–30,468 bp · +
trnA-UGC · MN814853.1 · 30,528–31,404 bp · +
rrn23 · MN814853.1 · 31,566–34,381 bp · +
rrn4.5 · MN814853.1 · 34,483–34,585 bp · +
rrn5 · MN814853.1 · 34,815–34,935 bp · +
trnR-ACG · MN814853.1 · 35,188–35,261 bp · +
ycf1 · MN814853.1 · 36,234–41,672 bp · +
rps15 · MN814853.1 · 42,048–42,320 bp · +
ndhH · MN814853.1 · 42,417–43,598 bp · +
ndhA · MN814853.1 · 43,600–45,672 bp · +
ndhI · MN814853.1 · 45,748–46,254 bp · +
ndhG · MN814853.1 · 46,592–47,122 bp · +
ndhE · MN814853.1 · 47,356–47,661 bp · +
psaC · MN814853.1 · 47,919–48,164 bp · +
ndhD · MN814853.1 · 48,284–49,786 bp · +
ndhF · MN814853.1 · 52,300–54,540 bp · +
trnN-GUU · MN814853.1 · 55,927–55,998 bp · +
rps12 · MN814853.1 · 66,038–66,834 bp · +
rps7 · MN814853.1 · 66,888–67,355 bp · +
ndhB · MN814853.1 · 67,631–69,843 bp · +
trnL-CAA · MN814853.1 · 70,392–70,472 bp · +
trnI-CAU · MN814853.1 · 77,932–78,005 bp · +
rpl23 · MN814853.1 · 78,171–78,452 bp · +
rpl2 · MN814853.1 · 78,471–79,959 bp · +
rps19 · MN814853.1 · 80,012–80,290 bp · +
rpl22 · MN814853.1 · 80,345–80,812 bp · +
rps3 · MN814853.1 · 80,797–81,447 bp · +
rpl16 · MN814853.1 · 81,604–82,835 bp · +
rpl14 · MN814853.1 · 82,964–83,332 bp · +
rps8 · MN814853.1 · 83,500–83,904 bp · +
infA · MN814853.1 · 84,035–84,268 bp · +
rpl36 · MN814853.1 · 84,364–84,477 bp · +
rps11 · MN814853.1 · 84,579–84,995 bp · +
rpoA · MN814853.1 · 85,066–86,079 bp · +
psbN · MN814853.1 · 89,449–89,580 bp · +
clpP · MN814853.1 · 91,906–93,849 bp · +
rpl20 · MN814853.1 · 94,922–95,308 bp · +
trnP-UGG · MN814853.1 · 97,152–97,225 bp · +
trnW-CCA · MN814853.1 · 97,387–97,460 bp · +
psbE · MN814853.1 · 98,862–99,113 bp · +
psbF · MN814853.1 · 99,128–99,247 bp · +
psbL · MN814853.1 · 99,271–99,387 bp · +
psbJ · MN814853.1 · 99,529–99,651 bp · +
atpB · MN814853.1 · 109,061–110,557 bp · +
atpE · MN814853.1 · 110,554–110,955 bp · +
trnV-UAC · MN814853.1 · 111,408–112,076 bp · +
ndhC · MN814853.1 · 112,904–113,266 bp · +
ndhK · MN814853.1 · 113,319–113,993 bp · +
ndhJ · MN814853.1 · 114,094–114,570 bp · +
trnT-UGU · MN814853.1 · 116,824–116,896 bp · +
rps4 · MN814853.1 · 117,240–117,845 bp · +
ycf3 · MN814853.1 · 118,662–120,585 bp · +
psaA · MN814853.1 · 121,307–123,559 bp · +
psaB · MN814853.1 · 123,585–125,789 bp · +
rps14 · MN814853.1 · 125,912–126,214 bp · +
trnM-CAU · MN814853.1 · 126,359–126,432 bp · +
trnS-UGA · MN814853.1 · 127,463–127,555 bp · +
trnE-UUC · MN814853.1 · 132,099–132,171 bp · +
trnY-GUA · MN814853.1 · 132,232–132,315 bp · +
trnD-GUC · MN814853.1 · 132,415–132,488 bp · +
psbM · MN814853.1 · 133,003–133,107 bp · +
rpoB · MN814853.1 · 135,272–138,484 bp · +
rpoC1 · MN814853.1 · 138,511–141,356 bp · +
rpoC2 · MN814853.1 · 141,529–145,635 bp · +
rps2 · MN814853.1 · 145,898–146,608 bp · +
atpI · MN814853.1 · 146,824–147,567 bp · +
atpH · MN814853.1 · 148,535–148,780 bp · +
atpF · MN814853.1 · 149,121–150,360 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga ciliata
ANNOTATED PLASTOME
MN814853.1
150,494 bp · 131 genes
Gene function
ATP synthase
Transfer RNA
Photosystem II
Ribosomal protein
Other
NADH dehydrogenase
Ribosomal RNA
Photosystem I
RNA polymerase
Cytochrome
0 37624 75247 112870 150494 bp
Forward strand 5′ → 3′
atpA trnS-GCU trnQ-UUG rps16 trnK-UUU matK psbA trnH-GUG ycf2 trnV-GAC trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rps15 ndhH ndhA ndhI ndhG ndhE psaC ndhD ndhF trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19 rpl22 rps3 rpl16 rpl14 rps8 infA rpl36 rps11 rpoA psbN clpP rps12 rpl20 trnP-UGG trnW-CCA psbE psbF psbL psbJ atpB atpE trnV-UAC ndhC ndhK ndhJ trnT-UGU rps4 ycf3 psaA psaB rps14 trnM-CAU trnS-UGA trnE-UUC trnY-GUA trnD-GUC psbM rpoB rpoC1 rpoC2 rps2 atpI atpH atpF
trnR-UCU trnG-UCC psbI psbK rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn16 trnN-GUU ccsA trnL-UAG rpl32 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2 petD petB psbH psbT psbB rps18 rpl33 psaJ petG petL petA cemA ycf4 psaI accD rbcL trnM-CAU trnP-GAA trnL-UAA trnS-GGA trnG-GCC psbZ psbC psbD trnT-GGU petN trnC-GCA
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
atpA gene + 1 1524 1524 Locate
trnR-UCU gene − 1630 1701 72 Locate
trnG-UCC gene − 1887 2647 761 Locate
trnS-GCU gene + 3324 3411 88 Locate
psbI gene − 3525 3635 111 Locate
psbK gene − 4047 4232 186 Locate
trnQ-UUG gene + 4562 4633 72 Locate
rps16 gene + 5454 6585 1132 Locate
trnK-UUU gene + 7486 10054 2569 Locate
matK gene + 8226 9788 1563 Locate
psbA gene + 10287 11345 1059 Locate
trnH-GUG gene + 11670 11743 74 Locate
rpl2 gene − 11860 13348 1489 Locate
rpl23 gene − 13367 13648 282 Locate
trnI-CAU gene − 13814 13887 74 Locate
ycf2 gene + 13976 20740 6765 Locate
trnL-CAA gene − 21347 21427 81 Locate
ndhB gene − 21976 24188 2213 Locate
rps7 gene − 24464 24931 468 Locate
rps12 gene − 24985 25781 797 Locate
trnV-GAC gene + 27359 27430 72 Locate
rrn16 gene − 27659 29148 1490 Locate
trnI-GAU gene + 29448 30468 1021 Locate
trnA-UGC gene + 30528 31404 877 Locate
rrn23 gene + 31566 34381 2816 Locate
rrn4.5 gene + 34483 34585 103 Locate
rrn5 gene + 34815 34935 121 Locate
trnR-ACG gene + 35188 35261 74 Locate
trnN-GUU gene − 35821 35892 72 Locate
ycf1 gene + 36234 41672 5439 Locate
rps15 gene + 42048 42320 273 Locate
ndhH gene + 42417 43598 1182 Locate
ndhA gene + 43600 45672 2073 Locate
ndhI gene + 45748 46254 507 Locate
ndhG gene + 46592 47122 531 Locate
ndhE gene + 47356 47661 306 Locate
psaC gene + 47919 48164 246 Locate
ndhD gene + 48284 49786 1503 Locate
ccsA gene − 50042 51013 972 Locate
trnL-UAG gene − 51107 51186 80 Locate
rpl32 gene − 51587 51763 177 Locate
ndhF gene + 52300 54540 2241 Locate
ycf1 gene − 54431 55585 1155 Locate
trnN-GUU gene + 55927 55998 72 Locate
trnR-ACG gene − 56558 56631 74 Locate
rrn5 gene − 56884 57004 121 Locate
rrn4.5 gene − 57234 57336 103 Locate
rrn23 gene − 57438 60253 2816 Locate
trnA-UGC gene − 60415 61291 877 Locate
trnI-GAU gene − 61351 62371 1021 Locate
rrn16 gene − 62671 64160 1490 Locate
trnV-GAC gene − 64389 64460 72 Locate
rps12 gene + 66038 66834 797 Locate
rps7 gene + 66888 67355 468 Locate
ndhB gene + 67631 69843 2213 Locate
trnL-CAA gene + 70392 70472 81 Locate
ycf2 gene − 71079 77843 6765 Locate
trnI-CAU gene + 77932 78005 74 Locate
rpl23 gene + 78171 78452 282 Locate
rpl2 gene + 78471 79959 1489 Locate
rps19 gene + 80012 80290 279 Locate
rpl22 gene + 80345 80812 468 Locate
rps3 gene + 80797 81447 651 Locate
rpl16 gene + 81604 82835 1232 Locate
rpl14 gene + 82964 83332 369 Locate
rps8 gene + 83500 83904 405 Locate
infA gene + 84035 84268 234 Locate
rpl36 gene + 84364 84477 114 Locate
rps11 gene + 84579 84995 417 Locate
rpoA gene + 85066 86079 1014 Locate
petD gene − 86265 87479 1215 Locate
petB gene − 87673 89005 1333 Locate
psbH gene − 89122 89343 222 Locate
psbN gene + 89449 89580 132 Locate
psbT gene − 89646 89747 102 Locate
psbB gene − 89923 91449 1527 Locate
clpP gene + 91906 93849 1944 Locate
rps12 gene + 93975 94088 114 Locate
rpl20 gene + 94922 95308 387 Locate
rps18 gene − 95555 95860 306 Locate
rpl33 gene − 96041 96241 201 Locate
psaJ gene − 96714 96848 135 Locate
trnP-UGG gene + 97152 97225 74 Locate
trnW-CCA gene + 97387 97460 74 Locate
petG gene − 97584 97697 114 Locate
petL gene − 97877 97972 96 Locate
psbE gene + 98862 99113 252 Locate
psbF gene + 99128 99247 120 Locate
psbL gene + 99271 99387 117 Locate
psbJ gene + 99529 99651 123 Locate
petA gene − 100555 101517 963 Locate
cemA gene − 101733 102422 690 Locate
ycf4 gene − 103075 103629 555 Locate
psaI gene − 104042 104152 111 Locate
accD gene − 104607 106142 1536 Locate
rbcL gene − 106812 108260 1449 Locate
atpB gene + 109061 110557 1497 Locate
atpE gene + 110554 110955 402 Locate
trnM-CAU gene − 111155 111227 73 Locate
trnV-UAC gene + 111408 112076 669 Locate
ndhC gene + 112904 113266 363 Locate
ndhK gene + 113319 113993 675 Locate
ndhJ gene + 114094 114570 477 Locate
trnP-GAA gene − 115210 115282 73 Locate
trnL-UAA gene − 115602 116169 568 Locate
trnT-UGU gene + 116824 116896 73 Locate
rps4 gene + 117240 117845 606 Locate
trnS-GGA gene − 118155 118241 87 Locate
ycf3 gene + 118662 120585 1924 Locate
psaA gene + 121307 123559 2253 Locate
psaB gene + 123585 125789 2205 Locate
rps14 gene + 125912 126214 303 Locate
trnM-CAU gene + 126359 126432 74 Locate
trnG-GCC gene − 126611 126681 71 Locate
psbZ gene − 126949 127137 189 Locate
trnS-UGA gene + 127463 127555 93 Locate
psbC gene − 127810 129231 1422 Locate
psbD gene − 129179 130240 1062 Locate
trnT-GGU gene − 131621 131692 72 Locate
trnE-UUC gene + 132099 132171 73 Locate
trnY-GUA gene + 132232 132315 84 Locate
trnD-GUC gene + 132415 132488 74 Locate
psbM gene + 133003 133107 105 Locate
petN gene − 133655 133744 90 Locate
trnC-GCA gene − 134047 134117 71 Locate
rpoB gene + 135272 138484 3213 Locate
rpoC1 gene + 138511 141356 2846 Locate
rpoC2 gene + 141529 145635 4107 Locate
rps2 gene + 145898 146608 711 Locate
atpI gene + 146824 147567 744 Locate
atpH gene + 148535 148780 246 Locate
atpF gene + 149121 150360 1240 Locate
Status Available
Accession MN814853.1
Length 150,494 bp
GC content 38.3%
Annotated genes 131
Gene sequence records 8
Atp Synthase 6 Translation Rna 37 Photosystem Ii 15 Ribosomal Protein 26 Other 13 Nad Dehydrogenase 12 Ribosomal Rna 8 Photosystem I 5 Rna Polymerase 4 Cytochrome 6
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources