Ajuga decumbens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnR-UCU · MN814854.1 · 1,630–1,701 bp · −
trnG-UCC · MN814854.1 · 1,887–2,647 bp · −
psbI · MN814854.1 · 3,525–3,635 bp · −
psbK · MN814854.1 · 4,017–4,202 bp · −
rpl2 · MN814854.1 · 11,849–13,337 bp · −
rpl23 · MN814854.1 · 13,356–13,637 bp · −
trnI-CAU · MN814854.1 · 13,803–13,876 bp · −
trnL-CAA · MN814854.1 · 21,318–21,398 bp · −
ndhB · MN814854.1 · 21,947–24,159 bp · −
rps7 · MN814854.1 · 24,435–24,902 bp · −
rps12 · MN814854.1 · 24,956–25,752 bp · −
rrn16 · MN814854.1 · 27,630–29,119 bp · −
trnN-GUU · MN814854.1 · 35,783–35,854 bp · −
ndhF · MN814854.1 · 37,200–39,473 bp · −
ndhD · MN814854.1 · 41,985–43,487 bp · −
psaC · MN814854.1 · 43,607–43,852 bp · −
ndhE · MN814854.1 · 44,110–44,415 bp · −
ndhG · MN814854.1 · 44,649–45,179 bp · −
ndhI · MN814854.1 · 45,517–46,023 bp · −
ndhA · MN814854.1 · 46,099–48,176 bp · −
ndhH · MN814854.1 · 48,178–49,359 bp · −
rps15 · MN814854.1 · 49,456–49,728 bp · −
ycf1 · MN814854.1 · 50,104–55,398 bp · −
trnR-ACG · MN814854.1 · 56,371–56,444 bp · −
rrn5 · MN814854.1 · 56,689–56,809 bp · −
rrn4.5 · MN814854.1 · 57,039–57,141 bp · −
rrn23 · MN814854.1 · 57,243–60,058 bp · −
trnA-UGC · MN814854.1 · 60,220–61,096 bp · −
trnI-GAU · MN814854.1 · 61,156–62,175 bp · −
rrn16 · MN814854.1 · 62,475–63,964 bp · −
trnV-GAC · MN814854.1 · 64,193–64,264 bp · −
ycf2 · MN814854.1 · 70,883–77,629 bp · −
petD · MN814854.1 · 86,055–87,269 bp · −
petB · MN814854.1 · 87,463–88,797 bp · −
psbH · MN814854.1 · 88,914–89,135 bp · −
psbT · MN814854.1 · 89,438–89,539 bp · −
psbB · MN814854.1 · 89,715–91,241 bp · −
rps18 · MN814854.1 · 95,348–95,653 bp · −
rpl33 · MN814854.1 · 95,834–96,034 bp · −
psaJ · MN814854.1 · 96,507–96,641 bp · −
petG · MN814854.1 · 97,363–97,476 bp · −
petL · MN814854.1 · 97,646–97,741 bp · −
petA · MN814854.1 · 100,314–101,276 bp · −
cemA · MN814854.1 · 101,510–102,199 bp · −
ycf4 · MN814854.1 · 102,852–103,406 bp · −
psaI · MN814854.1 · 103,822–103,932 bp · −
accD · MN814854.1 · 104,387–105,922 bp · −
rbcL · MN814854.1 · 106,596–108,044 bp · −
trnM-CAU · MN814854.1 · 110,940–111,012 bp · −
trnP-GAA · MN814854.1 · 115,001–115,073 bp · −
trnL-UAA · MN814854.1 · 115,372–115,937 bp · −
trnS-GGA · MN814854.1 · 117,924–118,010 bp · −
trnG-GCC · MN814854.1 · 126,434–126,504 bp · −
psbZ · MN814854.1 · 126,772–126,960 bp · −
psbC · MN814854.1 · 127,633–129,054 bp · −
psbD · MN814854.1 · 129,002–130,063 bp · −
trnT-GGU · MN814854.1 · 131,444–131,515 bp · −
petN · MN814854.1 · 133,491–133,580 bp · −
trnC-GCA · MN814854.1 · 133,888–133,958 bp · −
atpA · MN814854.1 · 1–1,524 bp · +
trnS-GCU · MN814854.1 · 3,324–3,411 bp · +
trnQ-UUG · MN814854.1 · 4,540–4,611 bp · +
rps16 · MN814854.1 · 5,433–6,574 bp · +
trnK-UUU · MN814854.1 · 7,480–10,050 bp · +
matK · MN814854.1 · 8,222–9,784 bp · +
psbA · MN814854.1 · 10,276–11,334 bp · +
trnH-GUG · MN814854.1 · 11,659–11,732 bp · +
ycf2 · MN814854.1 · 13,965–20,711 bp · +
rps12 · MN814854.1 · 93,768–93,881 bp · +
trnV-GAC · MN814854.1 · 27,330–27,401 bp · +
trnI-GAU · MN814854.1 · 29,419–30,438 bp · +
trnA-UGC · MN814854.1 · 30,498–31,374 bp · +
rrn23 · MN814854.1 · 31,536–34,351 bp · +
rrn4.5 · MN814854.1 · 34,453–34,555 bp · +
rrn5 · MN814854.1 · 34,785–34,905 bp · +
trnR-ACG · MN814854.1 · 35,150–35,223 bp · +
ycf1 · MN814854.1 · 36,196–37,266 bp · +
rpl32 · MN814854.1 · 40,010–40,186 bp · +
trnL-UAG · MN814854.1 · 40,586–40,665 bp · +
ccsA · MN814854.1 · 40,759–41,730 bp · +
trnN-GUU · MN814854.1 · 55,740–55,811 bp · +
rps12 · MN814854.1 · 65,842–66,638 bp · +
rps7 · MN814854.1 · 66,692–67,159 bp · +
ndhB · MN814854.1 · 67,435–69,647 bp · +
trnL-CAA · MN814854.1 · 70,196–70,276 bp · +
trnI-CAU · MN814854.1 · 77,718–77,791 bp · +
rpl23 · MN814854.1 · 77,957–78,238 bp · +
rpl2 · MN814854.1 · 78,257–79,745 bp · +
rps19 · MN814854.1 · 79,798–80,076 bp · +
rpl22 · MN814854.1 · 80,131–80,598 bp · +
rps3 · MN814854.1 · 80,583–81,233 bp · +
rpl16 · MN814854.1 · 81,390–82,625 bp · +
rpl14 · MN814854.1 · 82,753–83,121 bp · +
rps8 · MN814854.1 · 83,290–83,694 bp · +
infA · MN814854.1 · 83,825–84,058 bp · +
rpl36 · MN814854.1 · 84,154–84,267 bp · +
rps11 · MN814854.1 · 84,369–84,785 bp · +
rpoA · MN814854.1 · 84,856–85,869 bp · +
psbN · MN814854.1 · 89,241–89,372 bp · +
clpP · MN814854.1 · 91,699–93,642 bp · +
rpl20 · MN814854.1 · 94,715–95,101 bp · +
trnP-UGG · MN814854.1 · 96,933–97,006 bp · +
trnW-CCA · MN814854.1 · 97,168–97,241 bp · +
psbE · MN814854.1 · 98,631–98,882 bp · +
psbF · MN814854.1 · 98,897–99,016 bp · +
psbL · MN814854.1 · 99,040–99,156 bp · +
psbJ · MN814854.1 · 99,298–99,420 bp · +
atpB · MN814854.1 · 108,846–110,342 bp · +
atpE · MN814854.1 · 110,339–110,740 bp · +
trnV-UAC · MN814854.1 · 111,193–111,861 bp · +
ndhC · MN814854.1 · 112,695–113,057 bp · +
ndhK · MN814854.1 · 113,110–113,784 bp · +
ndhJ · MN814854.1 · 113,885–114,361 bp · +
trnT-UGU · MN814854.1 · 116,592–116,664 bp · +
rps4 · MN814854.1 · 117,009–117,614 bp · +
ycf3 · MN814854.1 · 118,431–120,355 bp · +
psaA · MN814854.1 · 121,130–123,382 bp · +
psaB · MN814854.1 · 123,408–125,612 bp · +
rps14 · MN814854.1 · 125,735–126,037 bp · +
trnM-CAU · MN814854.1 · 126,182–126,255 bp · +
trnS-UGA · MN814854.1 · 127,286–127,378 bp · +
trnE-UUC · MN814854.1 · 131,922–131,994 bp · +
trnY-GUA · MN814854.1 · 132,054–132,137 bp · +
trnD-GUC · MN814854.1 · 132,237–132,310 bp · +
psbM · MN814854.1 · 132,825–132,929 bp · +
rpoB · MN814854.1 · 135,124–138,336 bp · +
rpoC1 · MN814854.1 · 138,363–141,208 bp · +
rpoC2 · MN814854.1 · 141,381–145,454 bp · +
rps2 · MN814854.1 · 145,755–146,465 bp · +
atpI · MN814854.1 · 146,681–147,424 bp · +
atpH · MN814854.1 · 148,391–148,636 bp · +
atpF · MN814854.1 · 148,976–150,215 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga decumbens
ANNOTATED PLASTOME
MN814854.1
150,325 bp · 131 genes
Gene function
ATP synthase
Transfer RNA
Photosystem II
Ribosomal protein
Other
NADH dehydrogenase
Ribosomal RNA
Photosystem I
RNA polymerase
Cytochrome
0 37581 75162 112744 150325 bp
Forward strand 5′ → 3′
atpA trnS-GCU trnQ-UUG rps16 trnK-UUU matK psbA trnH-GUG ycf2 trnV-GAC trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19 rpl22 rps3 rpl16 rpl14 rps8 infA rpl36 rps11 rpoA psbN clpP rps12 rpl20 trnP-UGG trnW-CCA psbE psbF psbL psbJ atpB atpE trnV-UAC ndhC ndhK ndhJ trnT-UGU rps4 ycf3 psaA psaB rps14 trnM-CAU trnS-UGA trnE-UUC trnY-GUA trnD-GUC psbM rpoB rpoC1 rpoC2 rps2 atpI atpH atpF
trnR-UCU trnG-UCC psbI psbK rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn16 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2 petD petB psbH psbT psbB rps18 rpl33 psaJ petG petL petA cemA ycf4 psaI accD rbcL trnM-CAU trnP-GAA trnL-UAA trnS-GGA trnG-GCC psbZ psbC psbD trnT-GGU petN trnC-GCA
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
atpA gene + 1 1524 1524 Locate
trnR-UCU gene − 1630 1701 72 Locate
trnG-UCC gene − 1887 2647 761 Locate
trnS-GCU gene + 3324 3411 88 Locate
psbI gene − 3525 3635 111 Locate
psbK gene − 4017 4202 186 Locate
trnQ-UUG gene + 4540 4611 72 Locate
rps16 gene + 5433 6574 1142 Locate
trnK-UUU gene + 7480 10050 2571 Locate
matK gene + 8222 9784 1563 Locate
psbA gene + 10276 11334 1059 Locate
trnH-GUG gene + 11659 11732 74 Locate
rpl2 gene − 11849 13337 1489 Locate
rpl23 gene − 13356 13637 282 Locate
trnI-CAU gene − 13803 13876 74 Locate
ycf2 gene + 13965 20711 6747 Locate
trnL-CAA gene − 21318 21398 81 Locate
ndhB gene − 21947 24159 2213 Locate
rps7 gene − 24435 24902 468 Locate
rps12 gene − 24956 25752 797 Locate
trnV-GAC gene + 27330 27401 72 Locate
rrn16 gene − 27630 29119 1490 Locate
trnI-GAU gene + 29419 30438 1020 Locate
trnA-UGC gene + 30498 31374 877 Locate
rrn23 gene + 31536 34351 2816 Locate
rrn4.5 gene + 34453 34555 103 Locate
rrn5 gene + 34785 34905 121 Locate
trnR-ACG gene + 35150 35223 74 Locate
trnN-GUU gene − 35783 35854 72 Locate
ycf1 gene + 36196 37266 1071 Locate
ndhF gene − 37200 39473 2274 Locate
rpl32 gene + 40010 40186 177 Locate
trnL-UAG gene + 40586 40665 80 Locate
ccsA gene + 40759 41730 972 Locate
ndhD gene − 41985 43487 1503 Locate
psaC gene − 43607 43852 246 Locate
ndhE gene − 44110 44415 306 Locate
ndhG gene − 44649 45179 531 Locate
ndhI gene − 45517 46023 507 Locate
ndhA gene − 46099 48176 2078 Locate
ndhH gene − 48178 49359 1182 Locate
rps15 gene − 49456 49728 273 Locate
ycf1 gene − 50104 55398 5295 Locate
trnN-GUU gene + 55740 55811 72 Locate
trnR-ACG gene − 56371 56444 74 Locate
rrn5 gene − 56689 56809 121 Locate
rrn4.5 gene − 57039 57141 103 Locate
rrn23 gene − 57243 60058 2816 Locate
trnA-UGC gene − 60220 61096 877 Locate
trnI-GAU gene − 61156 62175 1020 Locate
rrn16 gene − 62475 63964 1490 Locate
trnV-GAC gene − 64193 64264 72 Locate
rps12 gene + 65842 66638 797 Locate
rps7 gene + 66692 67159 468 Locate
ndhB gene + 67435 69647 2213 Locate
trnL-CAA gene + 70196 70276 81 Locate
ycf2 gene − 70883 77629 6747 Locate
trnI-CAU gene + 77718 77791 74 Locate
rpl23 gene + 77957 78238 282 Locate
rpl2 gene + 78257 79745 1489 Locate
rps19 gene + 79798 80076 279 Locate
rpl22 gene + 80131 80598 468 Locate
rps3 gene + 80583 81233 651 Locate
rpl16 gene + 81390 82625 1236 Locate
rpl14 gene + 82753 83121 369 Locate
rps8 gene + 83290 83694 405 Locate
infA gene + 83825 84058 234 Locate
rpl36 gene + 84154 84267 114 Locate
rps11 gene + 84369 84785 417 Locate
rpoA gene + 84856 85869 1014 Locate
petD gene − 86055 87269 1215 Locate
petB gene − 87463 88797 1335 Locate
psbH gene − 88914 89135 222 Locate
psbN gene + 89241 89372 132 Locate
psbT gene − 89438 89539 102 Locate
psbB gene − 89715 91241 1527 Locate
clpP gene + 91699 93642 1944 Locate
rps12 gene + 93768 93881 114 Locate
rpl20 gene + 94715 95101 387 Locate
rps18 gene − 95348 95653 306 Locate
rpl33 gene − 95834 96034 201 Locate
psaJ gene − 96507 96641 135 Locate
trnP-UGG gene + 96933 97006 74 Locate
trnW-CCA gene + 97168 97241 74 Locate
petG gene − 97363 97476 114 Locate
petL gene − 97646 97741 96 Locate
psbE gene + 98631 98882 252 Locate
psbF gene + 98897 99016 120 Locate
psbL gene + 99040 99156 117 Locate
psbJ gene + 99298 99420 123 Locate
petA gene − 100314 101276 963 Locate
cemA gene − 101510 102199 690 Locate
ycf4 gene − 102852 103406 555 Locate
psaI gene − 103822 103932 111 Locate
accD gene − 104387 105922 1536 Locate
rbcL gene − 106596 108044 1449 Locate
atpB gene + 108846 110342 1497 Locate
atpE gene + 110339 110740 402 Locate
trnM-CAU gene − 110940 111012 73 Locate
trnV-UAC gene + 111193 111861 669 Locate
ndhC gene + 112695 113057 363 Locate
ndhK gene + 113110 113784 675 Locate
ndhJ gene + 113885 114361 477 Locate
trnP-GAA gene − 115001 115073 73 Locate
trnL-UAA gene − 115372 115937 566 Locate
trnT-UGU gene + 116592 116664 73 Locate
rps4 gene + 117009 117614 606 Locate
trnS-GGA gene − 117924 118010 87 Locate
ycf3 gene + 118431 120355 1925 Locate
psaA gene + 121130 123382 2253 Locate
psaB gene + 123408 125612 2205 Locate
rps14 gene + 125735 126037 303 Locate
trnM-CAU gene + 126182 126255 74 Locate
trnG-GCC gene − 126434 126504 71 Locate
psbZ gene − 126772 126960 189 Locate
trnS-UGA gene + 127286 127378 93 Locate
psbC gene − 127633 129054 1422 Locate
psbD gene − 129002 130063 1062 Locate
trnT-GGU gene − 131444 131515 72 Locate
trnE-UUC gene + 131922 131994 73 Locate
trnY-GUA gene + 132054 132137 84 Locate
trnD-GUC gene + 132237 132310 74 Locate
psbM gene + 132825 132929 105 Locate
petN gene − 133491 133580 90 Locate
trnC-GCA gene − 133888 133958 71 Locate
rpoB gene + 135124 138336 3213 Locate
rpoC1 gene + 138363 141208 2846 Locate
rpoC2 gene + 141381 145454 4074 Locate
rps2 gene + 145755 146465 711 Locate
atpI gene + 146681 147424 744 Locate
atpH gene + 148391 148636 246 Locate
atpF gene + 148976 150215 1240 Locate
Status Available
Accession MN814854.1
Length 150,325 bp
GC content 38.3%
Annotated genes 131
Gene sequence records 8
Atp Synthase 6 Translation Rna 37 Photosystem Ii 15 Ribosomal Protein 26 Other 13 Nad Dehydrogenase 12 Ribosomal Rna 8 Photosystem I 5 Rna Polymerase 4 Cytochrome 6
SSR 74
Direct 13
Inverted 7
Palindromic 6
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources