Ajuga forrestii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_048512.1 · 4–77 bp · −
psbA · NC_048512.1 · 402–1,460 bp · −
trnK-UUU · NC_048512.1 · 1,693–4,260 bp · −
matK · NC_048512.1 · 1,959–3,521 bp · −
rps16 · NC_048512.1 · 5,150–6,292 bp · −
trnQ-UUG · NC_048512.1 · 7,114–7,185 bp · −
trnS-GCU · NC_048512.1 · 8,315–8,402 bp · −
atpA · NC_048512.1 · 10,203–11,726 bp · −
atpF · NC_048512.1 · 11,841–13,080 bp · −
atpH · NC_048512.1 · 13,438–13,683 bp · −
atpI · NC_048512.1 · 14,659–15,402 bp · −
rps2 · NC_048512.1 · 15,618–16,328 bp · −
rpoC2 · NC_048512.1 · 16,559–20,701 bp · −
rpoC1 · NC_048512.1 · 20,874–23,718 bp · −
rpoB · NC_048512.1 · 23,745–26,957 bp · −
psbM · NC_048512.1 · 29,147–29,251 bp · −
trnD-GUC · NC_048512.1 · 29,766–29,839 bp · −
trnY-GUA · NC_048512.1 · 29,939–30,022 bp · −
trnE-UUC · NC_048512.1 · 30,082–30,154 bp · −
trnS-UGA · NC_048512.1 · 34,698–34,790 bp · −
rps14 · NC_048512.1 · 36,038–36,340 bp · −
psaB · NC_048512.1 · 36,463–38,667 bp · −
psaA · NC_048512.1 · 38,693–40,945 bp · −
ycf3 · NC_048512.1 · 41,667–43,591 bp · −
rps4 · NC_048512.1 · 44,408–45,013 bp · −
trnT-UGU · NC_048512.1 · 45,363–45,435 bp · −
ndhJ · NC_048512.1 · 47,660–48,136 bp · −
ndhK · NC_048512.1 · 48,237–48,911 bp · −
ndhC · NC_048512.1 · 48,964–49,326 bp · −
trnV-UAC · NC_048512.1 · 50,151–50,817 bp · −
atpE · NC_048512.1 · 51,277–51,678 bp · −
atpB · NC_048512.1 · 51,675–53,171 bp · −
psbJ · NC_048512.1 · 62,572–62,694 bp · −
psbL · NC_048512.1 · 62,836–62,952 bp · −
psbF · NC_048512.1 · 62,976–63,095 bp · −
psbE · NC_048512.1 · 63,110–63,361 bp · −
trnW-CCA · NC_048512.1 · 64,757–64,830 bp · −
trnP-UGG · NC_048512.1 · 64,993–65,066 bp · −
rpl20 · NC_048512.1 · 66,897–67,283 bp · −
rps12 · NC_048512.1 · 68,117–68,230 bp · −
rps12 · NC_048512.1 · 95,401–96,197 bp · −
clpP · NC_048512.1 · 68,546–70,300 bp · −
psbN · NC_048512.1 · 72,630–72,761 bp · −
rpoA · NC_048512.1 · 76,136–77,149 bp · −
rps11 · NC_048512.1 · 77,220–77,636 bp · −
rpl36 · NC_048512.1 · 77,738–77,851 bp · −
infA · NC_048512.1 · 77,947–78,180 bp · −
rps8 · NC_048512.1 · 78,311–78,715 bp · −
rpl14 · NC_048512.1 · 78,886–79,254 bp · −
rpl16 · NC_048512.1 · 79,382–80,617 bp · −
rps3 · NC_048512.1 · 80,774–81,424 bp · −
rpl22 · NC_048512.1 · 81,409–81,876 bp · −
rps19 · NC_048512.1 · 81,931–82,209 bp · −
rpl2 · NC_048512.1 · 82,262–83,750 bp · −
rpl23 · NC_048512.1 · 83,769–84,050 bp · −
trnI-CAU · NC_048512.1 · 84,221–84,294 bp · −
trnL-CAA · NC_048512.1 · 91,763–91,843 bp · −
ndhB · NC_048512.1 · 92,392–94,604 bp · −
rps7 · NC_048512.1 · 94,880–95,347 bp · −
rrn16 · NC_048512.1 · 98,076–99,565 bp · −
trnN-GUU · NC_048512.1 · 106,237–106,308 bp · −
ndhF · NC_048512.1 · 107,695–109,941 bp · −
ndhD · NC_048512.1 · 112,456–113,958 bp · −
psaC · NC_048512.1 · 114,078–114,323 bp · −
ndhE · NC_048512.1 · 114,581–114,886 bp · −
ndhG · NC_048512.1 · 115,120–115,650 bp · −
ndhI · NC_048512.1 · 115,989–116,495 bp · −
ndhA · NC_048512.1 · 116,571–118,643 bp · −
ndhH · NC_048512.1 · 118,645–119,826 bp · −
rps15 · NC_048512.1 · 119,923–120,195 bp · −
ycf1 · NC_048512.1 · 120,571–125,991 bp · −
trnR-ACG · NC_048512.1 · 126,964–127,037 bp · −
rrn5 · NC_048512.1 · 127,290–127,410 bp · −
rrn4.5 · NC_048512.1 · 127,640–127,742 bp · −
rrn23 · NC_048512.1 · 127,742–130,659 bp · −
trnA-UGC · NC_048512.1 · 130,821–131,697 bp · −
trnI-GAU · NC_048512.1 · 131,757–132,776 bp · −
trnV-GAC · NC_048512.1 · 134,795–134,866 bp · −
ycf2 · NC_048512.1 · 141,485–148,258 bp · −
psbK · NC_048512.1 · 7,523–7,708 bp · +
psbI · NC_048512.1 · 8,089–8,199 bp · +
trnG-UCC · NC_048512.1 · 9,081–9,841 bp · +
trnR-UCU · NC_048512.1 · 10,026–10,097 bp · +
trnC-GCA · NC_048512.1 · 28,123–28,193 bp · +
petN · NC_048512.1 · 28,501–28,590 bp · +
trnT-GGU · NC_048512.1 · 30,561–30,632 bp · +
psbD · NC_048512.1 · 32,013–33,074 bp · +
psbC · NC_048512.1 · 33,022–34,443 bp · +
psbZ · NC_048512.1 · 35,116–35,304 bp · +
trnG-GCC · NC_048512.1 · 35,571–35,641 bp · +
trnS-GGA · NC_048512.1 · 44,012–44,098 bp · +
trnL-UAA · NC_048512.1 · 46,091–46,657 bp · +
trnP-GAA · NC_048512.1 · 46,956–47,028 bp · +
trnM-CAU · NC_048512.1 · 50,998–51,070 bp · +
rbcL · NC_048512.1 · 53,969–55,417 bp · +
accD · NC_048512.1 · 56,084–57,619 bp · +
psaI · NC_048512.1 · 58,072–58,182 bp · +
ycf4 · NC_048512.1 · 58,595–59,149 bp · +
cemA · NC_048512.1 · 59,783–60,472 bp · +
petA · NC_048512.1 · 60,706–61,668 bp · +
petL · NC_048512.1 · 64,251–64,346 bp · +
petG · NC_048512.1 · 64,516–64,629 bp · +
psaJ · NC_048512.1 · 65,358–65,492 bp · +
rpl33 · NC_048512.1 · 65,965–66,165 bp · +
rps18 · NC_048512.1 · 66,346–66,651 bp · +
rps12 · NC_048512.1 · 136,444–137,240 bp · +
psbB · NC_048512.1 · 70,761–72,287 bp · +
psbT · NC_048512.1 · 72,463–72,564 bp · +
psbH · NC_048512.1 · 72,867–73,088 bp · +
petB · NC_048512.1 · 73,205–74,541 bp · +
petD · NC_048512.1 · 74,735–75,950 bp · +
ycf2 · NC_048512.1 · 84,383–91,156 bp · +
trnV-GAC · NC_048512.1 · 97,775–97,846 bp · +
trnI-GAU · NC_048512.1 · 99,865–100,884 bp · +
trnA-UGC · NC_048512.1 · 100,944–101,820 bp · +
rrn23 · NC_048512.1 · 101,982–104,899 bp · +
rrn4.5 · NC_048512.1 · 104,899–105,001 bp · +
rrn5 · NC_048512.1 · 105,231–105,351 bp · +
trnR-ACG · NC_048512.1 · 105,604–105,677 bp · +
rpl32 · NC_048512.1 · 110,478–110,654 bp · +
trnL-UAG · NC_048512.1 · 111,055–111,134 bp · +
ccsA · NC_048512.1 · 111,228–112,199 bp · +
trnN-GUU · NC_048512.1 · 126,333–126,404 bp · +
rrn16 · NC_048512.1 · 133,076–134,565 bp · +
rps7 · NC_048512.1 · 137,294–137,761 bp · +
ndhB · NC_048512.1 · 138,037–140,249 bp · +
trnL-CAA · NC_048512.1 · 140,798–140,878 bp · +
trnI-CAU · NC_048512.1 · 148,347–148,420 bp · +
rpl23 · NC_048512.1 · 148,591–148,872 bp · +
rpl2 · NC_048512.1 · 148,891–150,379 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga forrestii
ANNOTATED PLASTOME
NC_048512.1
150,492 bp · 129 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37623 75246 112869 150492 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnP-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rrn16 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn16 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
130 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 402 1460 1059 Locate
trnK-UUU gene − 1693 4260 2568 Locate
matK gene − 1959 3521 1563 Locate
rps16 gene − 5150 6292 1143 Locate
trnQ-UUG gene − 7114 7185 72 Locate
psbK gene + 7523 7708 186 Locate
psbI gene + 8089 8199 111 Locate
trnS-GCU gene − 8315 8402 88 Locate
trnG-UCC gene + 9081 9841 761 Locate
trnR-UCU gene + 10026 10097 72 Locate
atpA gene − 10203 11726 1524 Locate
atpF gene − 11841 13080 1240 Locate
atpH gene − 13438 13683 246 Locate
atpI gene − 14659 15402 744 Locate
rps2 gene − 15618 16328 711 Locate
rpoC2 gene − 16559 20701 4143 Locate
rpoC1 gene − 20874 23718 2845 Locate
rpoB gene − 23745 26957 3213 Locate
trnC-GCA gene + 28123 28193 71 Locate
petN gene + 28501 28590 90 Locate
psbM gene − 29147 29251 105 Locate
trnD-GUC gene − 29766 29839 74 Locate
trnY-GUA gene − 29939 30022 84 Locate
trnE-UUC gene − 30082 30154 73 Locate
trnT-GGU gene + 30561 30632 72 Locate
psbD gene + 32013 33074 1062 Locate
psbC gene + 33022 34443 1422 Locate
trnS-UGA gene − 34698 34790 93 Locate
psbZ gene + 35116 35304 189 Locate
trnG-GCC gene + 35571 35641 71 Locate
rps14 gene − 36038 36340 303 Locate
psaB gene − 36463 38667 2205 Locate
psaA gene − 38693 40945 2253 Locate
ycf3 gene − 41667 43591 1925 Locate
trnS-GGA gene + 44012 44098 87 Locate
rps4 gene − 44408 45013 606 Locate
trnT-UGU gene − 45363 45435 73 Locate
trnL-UAA gene + 46091 46657 567 Locate
trnP-GAA gene + 46956 47028 73 Locate
ndhJ gene − 47660 48136 477 Locate
ndhK gene − 48237 48911 675 Locate
ndhC gene − 48964 49326 363 Locate
trnV-UAC gene − 50151 50817 667 Locate
trnM-CAU gene + 50998 51070 73 Locate
atpE gene − 51277 51678 402 Locate
atpB gene − 51675 53171 1497 Locate
rbcL gene + 53969 55417 1449 Locate
accD gene + 56084 57619 1536 Locate
psaI gene + 58072 58182 111 Locate
ycf4 gene + 58595 59149 555 Locate
cemA gene + 59783 60472 690 Locate
petA gene + 60706 61668 963 Locate
psbJ gene − 62572 62694 123 Locate
psbL gene − 62836 62952 117 Locate
psbF gene − 62976 63095 120 Locate
psbE gene − 63110 63361 252 Locate
petL gene + 64251 64346 96 Locate
petG gene + 64516 64629 114 Locate
trnW-CCA gene − 64757 64830 74 Locate
trnP-UGG gene − 64993 65066 74 Locate
psaJ gene + 65358 65492 135 Locate
rpl33 gene + 65965 66165 201 Locate
rps18 gene + 66346 66651 306 Locate
rpl20 gene − 66897 67283 387 Locate
rps12 gene − 68117 68230 114 Locate
clpP gene − 68546 70300 1755 Locate
psbB gene + 70761 72287 1527 Locate
psbT gene + 72463 72564 102 Locate
psbN gene − 72630 72761 132 Locate
psbH gene + 72867 73088 222 Locate
petB gene + 73205 74541 1337 Locate
petD gene + 74735 75950 1216 Locate
rpoA gene − 76136 77149 1014 Locate
rps11 gene − 77220 77636 417 Locate
rpl36 gene − 77738 77851 114 Locate
infA gene − 77947 78180 234 Locate
rps8 gene − 78311 78715 405 Locate
rpl14 gene − 78886 79254 369 Locate
rpl16 gene − 79382 80617 1236 Locate
rps3 gene − 80774 81424 651 Locate
rpl22 gene − 81409 81876 468 Locate
rps19 gene − 81931 82209 279 Locate
rpl2 gene − 82262 83750 1489 Locate
rpl23 gene − 83769 84050 282 Locate
trnI-CAU gene − 84221 84294 74 Locate
ycf2 gene + 84383 91156 6774 Locate
trnL-CAA gene − 91763 91843 81 Locate
ndhB gene − 92392 94604 2213 Locate
rps7 gene − 94880 95347 468 Locate
rps12 gene − 95401 96197 797 Locate
trnV-GAC gene + 97775 97846 72 Locate
rrn16 gene − 98076 99565 1490 Locate
trnI-GAU gene + 99865 100884 1020 Locate
trnA-UGC gene + 100944 101820 877 Locate
rrn23 gene + 101982 104899 2918 Locate
rrn4.5 gene + 104899 105001 103 Locate
rrn5 gene + 105231 105351 121 Locate
trnR-ACG gene + 105604 105677 74 Locate
trnN-GUU gene − 106237 106308 72 Locate
ndhF gene − 107695 109941 2247 Locate
rpl32 gene + 110478 110654 177 Locate
trnL-UAG gene + 111055 111134 80 Locate
ccsA gene + 111228 112199 972 Locate
ndhD gene − 112456 113958 1503 Locate
psaC gene − 114078 114323 246 Locate
ndhE gene − 114581 114886 306 Locate
ndhG gene − 115120 115650 531 Locate
ndhI gene − 115989 116495 507 Locate
ndhA gene − 116571 118643 2073 Locate
ndhH gene − 118645 119826 1182 Locate
rps15 gene − 119923 120195 273 Locate
ycf1 gene − 120571 125991 5421 Locate
trnN-GUU gene + 126333 126404 72 Locate
trnR-ACG gene − 126964 127037 74 Locate
rrn5 gene − 127290 127410 121 Locate
rrn4.5 gene − 127640 127742 103 Locate
rrn23 gene − 127742 130659 2918 Locate
trnA-UGC gene − 130821 131697 877 Locate
trnI-GAU gene − 131757 132776 1020 Locate
rrn16 gene + 133076 134565 1490 Locate
trnV-GAC gene − 134795 134866 72 Locate
rps12 gene + 136444 137240 797 Locate
rps7 gene + 137294 137761 468 Locate
ndhB gene + 138037 140249 2213 Locate
trnL-CAA gene + 140798 140878 81 Locate
ycf2 gene − 141485 148258 6774 Locate
trnI-CAU gene + 148347 148420 74 Locate
rpl23 gene + 148591 148872 282 Locate
rpl2 gene + 148891 150379 1489 Locate
Status Available
Accession NC_048512.1
Length 150,492 bp
GC content 38.3%
Annotated genes 129
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources