Ajuga genevensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP024532.1 · 3–77 bp · −
psbA · PP024532.1 · 401–1,459 bp · −
trnK-UUU · PP024532.1 · 1,691–4,257 bp · −
matK · PP024532.1 · 1,958–3,520 bp · −
rps16 · PP024532.1 · 5,129–6,284 bp · −
trnQ-UUG · PP024532.1 · 6,713–6,784 bp · −
trnS-GCU · PP024532.1 · 7,910–7,997 bp · −
atpA · PP024532.1 · 9,805–11,328 bp · −
atpF · PP024532.1 · 11,406–12,645 bp · −
atpH · PP024532.1 · 13,001–13,246 bp · −
atpI · PP024532.1 · 14,203–14,946 bp · −
rps2 · PP024532.1 · 15,143–15,853 bp · −
rpoC2 · PP024532.1 · 16,146–20,213 bp · −
rpoC1 · PP024532.1 · 20,386–23,230 bp · −
rpoB · PP024532.1 · 23,257–26,469 bp · −
psbM · PP024532.1 · 28,633–28,737 bp · −
trnD-GUC · PP024532.1 · 29,237–29,313 bp · −
trnY-GUA · PP024532.1 · 29,411–29,496 bp · −
trnE-UUC · PP024532.1 · 29,555–29,627 bp · −
trnS-UGA · PP024532.1 · 34,207–34,299 bp · −
trnM-CAU · PP024532.1 · 35,322–35,396 bp · −
rps14 · PP024532.1 · 35,541–35,843 bp · −
psaB · PP024532.1 · 35,965–38,169 bp · −
psaA · PP024532.1 · 38,195–40,447 bp · −
ycf3 · PP024532.1 · 41,146–43,067 bp · −
rps4 · PP024532.1 · 43,875–44,480 bp · −
trnT-UGU · PP024532.1 · 44,820–44,894 bp · −
ndhJ · PP024532.1 · 47,136–47,612 bp · −
ndhK · PP024532.1 · 47,713–48,396 bp · −
ndhC · PP024532.1 · 48,449–48,811 bp · −
trnV-UAC · PP024532.1 · 49,605–50,269 bp · −
atpE · PP024532.1 · 50,722–51,123 bp · −
atpB · PP024532.1 · 51,120–52,616 bp · −
psbJ · PP024532.1 · 62,017–62,139 bp · −
psbL · PP024532.1 · 62,273–62,389 bp · −
psbF · PP024532.1 · 62,413–62,532 bp · −
psbE · PP024532.1 · 62,547–62,798 bp · −
trnW-CCA · PP024532.1 · 64,182–64,255 bp · −
trnP-UGG · PP024532.1 · 64,415–64,490 bp · −
rpl20 · PP024532.1 · 66,330–66,716 bp · −
rps12 · PP024532.1 · 67,551–67,664 bp · −
rps12 · PP024532.1 · 94,777–95,573 bp · −
clpP1 · PP024532.1 · 67,790–69,729 bp · −
psbN · PP024532.1 · 72,048–72,179 bp · −
rpoA · PP024532.1 · 75,553–76,566 bp · −
rps11 · PP024532.1 · 76,637–77,053 bp · −
rpl36 · PP024532.1 · 77,155–77,268 bp · −
infA · PP024532.1 · 77,364–77,597 bp · −
rps8 · PP024532.1 · 77,728–78,132 bp · −
rpl14 · PP024532.1 · 78,287–78,655 bp · −
rpl16 · PP024532.1 · 78,783–80,018 bp · −
rps3 · PP024532.1 · 80,182–80,832 bp · −
rpl22 · PP024532.1 · 80,817–81,284 bp · −
rps19 · PP024532.1 · 81,339–81,617 bp · −
rpl2 · PP024532.1 · 81,670–83,158 bp · −
rpl23 · PP024532.1 · 83,177–83,458 bp · −
trnM-CAU · PP024532.1 · 83,623–83,697 bp · −
trnL-CAA · PP024532.1 · 91,138–91,220 bp · −
ndhB · PP024532.1 · 91,768–93,980 bp · −
rps7 · PP024532.1 · 94,256–94,723 bp · −
trnN-GUU · PP024532.1 · 105,605–105,678 bp · −
ndhF · PP024532.1 · 107,064–109,304 bp · −
ndhD · PP024532.1 · 111,772–113,274 bp · −
psaC · PP024532.1 · 113,394–113,639 bp · −
ndhE · PP024532.1 · 113,890–114,195 bp · −
ndhG · PP024532.1 · 114,424–114,954 bp · −
ndhI · PP024532.1 · 115,308–115,814 bp · −
ndhA · PP024532.1 · 115,890–117,958 bp · −
ndhH · PP024532.1 · 117,960–119,195 bp · −
rps15 · PP024532.1 · 119,238–119,510 bp · −
ycf1 · PP024532.1 · 119,886–125,414 bp · −
trnR-ACG · PP024532.1 · 126,263–126,337 bp · −
rrn5 · PP024532.1 · 126,582–126,702 bp · −
rrn4.5 · PP024532.1 · 126,932–127,034 bp · −
rrn23 · PP024532.1 · 127,133–129,951 bp · −
trnA-UGC · PP024532.1 · 130,113–130,988 bp · −
trnE-UUC · PP024532.1 · 131,049–132,068 bp · −
rrn16 · PP024532.1 · 132,367–133,857 bp · −
trnV-GAC · PP024532.1 · 134,088–134,159 bp · −
ycf15 · PP024532.1 · 140,439–140,636 bp · −
ycf2 · PP024532.1 · 140,778–147,524 bp · −
psbK · PP024532.1 · 7,114–7,299 bp · +
psbI · PP024532.1 · 7,682–7,792 bp · +
trnG-UCC · PP024532.1 · 8,679–9,439 bp · +
trnR-UCU · PP024532.1 · 9,628–9,699 bp · +
trnC-GCA · PP024532.1 · 27,610–27,680 bp · +
petN · PP024532.1 · 27,988–28,077 bp · +
trnT-GGU · PP024532.1 · 30,069–30,142 bp · +
psbD · PP024532.1 · 31,522–32,583 bp · +
psbC · PP024532.1 · 32,531–33,952 bp · +
psbZ · PP024532.1 · 34,625–34,813 bp · +
trnG-GCC · PP024532.1 · 35,080–35,151 bp · +
trnS-GGA · PP024532.1 · 43,479–43,566 bp · +
trnL-UAA · PP024532.1 · 45,547–46,113 bp · +
trnF-GAA · PP024532.1 · 46,411–46,484 bp · +
trnM-CAU · PP024532.1 · 50,450–50,522 bp · +
rbcL · PP024532.1 · 53,395–54,864 bp · +
accD · PP024532.1 · 55,587–57,062 bp · +
psaI · PP024532.1 · 57,516–57,626 bp · +
ycf4 · PP024532.1 · 58,042–58,596 bp · +
cemA · PP024532.1 · 59,247–59,936 bp · +
petA · PP024532.1 · 60,152–61,114 bp · +
petL · PP024532.1 · 63,684–63,779 bp · +
petG · PP024532.1 · 63,948–64,061 bp · +
psaJ · PP024532.1 · 64,790–64,924 bp · +
rpl33 · PP024532.1 · 65,398–65,598 bp · +
rps18 · PP024532.1 · 65,779–66,084 bp · +
rps12 · PP024532.1 · 135,737–136,533 bp · +
psbB · PP024532.1 · 70,180–71,706 bp · +
psbT · PP024532.1 · 71,881–71,982 bp · +
psbH · PP024532.1 · 72,285–72,506 bp · +
petB · PP024532.1 · 72,623–73,959 bp · +
petD · PP024532.1 · 74,153–75,367 bp · +
ycf2 · PP024532.1 · 83,786–90,532 bp · +
ycf15 · PP024532.1 · 90,674–90,871 bp · +
trnV-GAC · PP024532.1 · 97,151–97,222 bp · +
rrn16 · PP024532.1 · 97,453–98,943 bp · +
trnE-UUC · PP024532.1 · 99,242–100,261 bp · +
trnA-UGC · PP024532.1 · 100,321–101,197 bp · +
rrn23 · PP024532.1 · 101,359–104,177 bp · +
rrn4.5 · PP024532.1 · 104,276–104,378 bp · +
rrn5 · PP024532.1 · 104,608–104,728 bp · +
trnR-ACG · PP024532.1 · 104,973–105,047 bp · +
ycf1 · PP024532.1 · 106,019–107,173 bp · +
rpl32 · PP024532.1 · 109,830–110,006 bp · +
trnL-UAG · PP024532.1 · 110,410–110,489 bp · +
ccsA · PP024532.1 · 110,584–111,555 bp · +
trnN-GUU · PP024532.1 · 125,632–125,705 bp · +
rps7 · PP024532.1 · 136,587–137,054 bp · +
ndhB · PP024532.1 · 137,330–139,542 bp · +
trnL-CAA · PP024532.1 · 140,090–140,172 bp · +
trnM-CAU · PP024532.1 · 147,613–147,687 bp · +
rpl23 · PP024532.1 · 147,852–148,133 bp · +
rpl2 · PP024532.1 · 148,152–149,640 bp · +
rps19 · PP024532.1 · 149,693–149,753 bp · +
0 kb
12 kb
24 kb
36 kb
48 kb
60 kb
72 kb
84 kb
96 kb
108 kb
120 kb
132 kb
144 kb
Ajuga genevensis
ANNOTATED PLASTOME
PP024532.1
149,753 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37438 74876 112315 149753 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnE-UUC trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnE-UUC rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 77 75 Locate
psbA gene − 401 1459 1059 Locate
trnK-UUU gene − 1691 4257 2567 Locate
matK gene − 1958 3520 1563 Locate
rps16 gene − 5129 6284 1156 Locate
trnQ-UUG gene − 6713 6784 72 Locate
psbK gene + 7114 7299 186 Locate
psbI gene + 7682 7792 111 Locate
trnS-GCU gene − 7910 7997 88 Locate
trnG-UCC gene + 8679 9439 761 Locate
trnR-UCU gene + 9628 9699 72 Locate
atpA gene − 9805 11328 1524 Locate
atpF gene − 11406 12645 1240 Locate
atpH gene − 13001 13246 246 Locate
atpI gene − 14203 14946 744 Locate
rps2 gene − 15143 15853 711 Locate
rpoC2 gene − 16146 20213 4068 Locate
rpoC1 gene − 20386 23230 2845 Locate
rpoB gene − 23257 26469 3213 Locate
trnC-GCA gene + 27610 27680 71 Locate
petN gene + 27988 28077 90 Locate
psbM gene − 28633 28737 105 Locate
trnD-GUC gene − 29237 29313 77 Locate
trnY-GUA gene − 29411 29496 86 Locate
trnE-UUC gene − 29555 29627 73 Locate
trnT-GGU gene + 30069 30142 74 Locate
psbD gene + 31522 32583 1062 Locate
psbC gene + 32531 33952 1422 Locate
trnS-UGA gene − 34207 34299 93 Locate
psbZ gene + 34625 34813 189 Locate
trnG-GCC gene + 35080 35151 72 Locate
trnM-CAU gene − 35322 35396 75 Locate
rps14 gene − 35541 35843 303 Locate
psaB gene − 35965 38169 2205 Locate
psaA gene − 38195 40447 2253 Locate
ycf3 gene − 41146 43067 1922 Locate
trnS-GGA gene + 43479 43566 88 Locate
rps4 gene − 43875 44480 606 Locate
trnT-UGU gene − 44820 44894 75 Locate
trnL-UAA gene + 45547 46113 567 Locate
trnF-GAA gene + 46411 46484 74 Locate
ndhJ gene − 47136 47612 477 Locate
ndhK gene − 47713 48396 684 Locate
ndhC gene − 48449 48811 363 Locate
trnV-UAC gene − 49605 50269 665 Locate
trnM-CAU gene + 50450 50522 73 Locate
atpE gene − 50722 51123 402 Locate
atpB gene − 51120 52616 1497 Locate
rbcL gene + 53395 54864 1470 Locate
accD gene + 55587 57062 1476 Locate
psaI gene + 57516 57626 111 Locate
ycf4 gene + 58042 58596 555 Locate
cemA gene + 59247 59936 690 Locate
petA gene + 60152 61114 963 Locate
psbJ gene − 62017 62139 123 Locate
psbL gene − 62273 62389 117 Locate
psbF gene − 62413 62532 120 Locate
psbE gene − 62547 62798 252 Locate
petL gene + 63684 63779 96 Locate
petG gene + 63948 64061 114 Locate
trnW-CCA gene − 64182 64255 74 Locate
trnP-UGG gene − 64415 64490 76 Locate
psaJ gene + 64790 64924 135 Locate
rpl33 gene + 65398 65598 201 Locate
rps18 gene + 65779 66084 306 Locate
rpl20 gene − 66330 66716 387 Locate
rps12 gene − 67551 67664 114 Locate
clpP1 gene − 67790 69729 1940 Locate
psbB gene + 70180 71706 1527 Locate
psbT gene + 71881 71982 102 Locate
psbN gene − 72048 72179 132 Locate
psbH gene + 72285 72506 222 Locate
petB gene + 72623 73959 1337 Locate
petD gene + 74153 75367 1215 Locate
rpoA gene − 75553 76566 1014 Locate
rps11 gene − 76637 77053 417 Locate
rpl36 gene − 77155 77268 114 Locate
infA gene − 77364 77597 234 Locate
rps8 gene − 77728 78132 405 Locate
rpl14 gene − 78287 78655 369 Locate
rpl16 gene − 78783 80018 1236 Locate
rps3 gene − 80182 80832 651 Locate
rpl22 gene − 80817 81284 468 Locate
rps19 gene − 81339 81617 279 Locate
rpl2 gene − 81670 83158 1489 Locate
rpl23 gene − 83177 83458 282 Locate
trnM-CAU gene − 83623 83697 75 Locate
ycf2 gene + 83786 90532 6747 Locate
ycf15 gene + 90674 90871 198 Locate
trnL-CAA gene − 91138 91220 83 Locate
ndhB gene − 91768 93980 2213 Locate
rps7 gene − 94256 94723 468 Locate
rps12 gene − 94777 95573 797 Locate
trnV-GAC gene + 97151 97222 72 Locate
rrn16 gene + 97453 98943 1491 Locate
trnE-UUC gene + 99242 100261 1020 Locate
trnA-UGC gene + 100321 101197 877 Locate
rrn23 gene + 101359 104177 2819 Locate
rrn4.5 gene + 104276 104378 103 Locate
rrn5 gene + 104608 104728 121 Locate
trnR-ACG gene + 104973 105047 75 Locate
trnN-GUU gene − 105605 105678 74 Locate
ycf1 gene + 106019 107173 1155 Locate
ndhF gene − 107064 109304 2241 Locate
rpl32 gene + 109830 110006 177 Locate
trnL-UAG gene + 110410 110489 80 Locate
ccsA gene + 110584 111555 972 Locate
ndhD gene − 111772 113274 1503 Locate
psaC gene − 113394 113639 246 Locate
ndhE gene − 113890 114195 306 Locate
ndhG gene − 114424 114954 531 Locate
ndhI gene − 115308 115814 507 Locate
ndhA gene − 115890 117958 2069 Locate
ndhH gene − 117960 119195 1236 Locate
rps15 gene − 119238 119510 273 Locate
ycf1 gene − 119886 125414 5529 Locate
trnN-GUU gene + 125632 125705 74 Locate
trnR-ACG gene − 126263 126337 75 Locate
rrn5 gene − 126582 126702 121 Locate
rrn4.5 gene − 126932 127034 103 Locate
rrn23 gene − 127133 129951 2819 Locate
trnA-UGC gene − 130113 130988 876 Locate
trnE-UUC gene − 131049 132068 1020 Locate
rrn16 gene − 132367 133857 1491 Locate
trnV-GAC gene − 134088 134159 72 Locate
rps12 gene + 135737 136533 797 Locate
rps7 gene + 136587 137054 468 Locate
ndhB gene + 137330 139542 2213 Locate
trnL-CAA gene + 140090 140172 83 Locate
ycf15 gene − 140439 140636 198 Locate
ycf2 gene − 140778 147524 6747 Locate
trnM-CAU gene + 147613 147687 75 Locate
rpl23 gene + 147852 148133 282 Locate
rpl2 gene + 148152 149640 1489 Locate
rps19 gene + 149693 149753 61 Locate
Status Available
Accession PP024532.1
Length 149,753 bp
GC content 38.3%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources