Coordinate-aware organelle record

Ajuga lupulina chloroplast genome

Available PV243805.1 150,368 bp 134 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

134 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	3	77	74
psbA	gene	photosystem-ii	−	401	1460	1059
trnK-UUU	gene	translation-rna	−	1692	4260	2568
matK	gene	other	−	1958	3521	1563
rps16	gene	ribosomal-protein	−	5159	6303	1144
trnQ-UUG	gene	translation-rna	−	7124	7196	72
psbK	gene	photosystem-ii	+	7533	7719	186
psbI	gene	photosystem-ii	+	8099	8210	111
trnS-GCU	gene	translation-rna	−	8325	8413	88
trnG-UCC	gene	translation-rna	+	9086	9847	761
trnR-UCU	gene	translation-rna	+	10032	10104	72
atpA	gene	atp-synthase	−	10209	11733	1524
atpF	gene	atp-synthase	−	11847	13087	1240
atpH	gene	atp-synthase	−	13443	13689	246
atpI	gene	atp-synthase	−	14664	15408	744
rps2	gene	ribosomal-protein	−	15623	16334	711
rpoC2	gene	rna-polymerase	−	16565	20720	4155
rpoC1	gene	rna-polymerase	−	20880	23725	2845
rpoB	gene	rna-polymerase	−	23751	26964	3213
trnC-GCA	gene	translation-rna	+	28131	28202	71
petN	gene	cytochrome	+	28509	28599	90
psbM	gene	photosystem-ii	−	29156	29261	105
trnD-GUC	gene	translation-rna	−	29775	29849	74
trnY-GUA	gene	translation-rna	−	29948	30032	84
trnE-UUC	gene	translation-rna	−	30091	30164	73
trnT-GGU	gene	translation-rna	+	30570	30642	72
psbD	gene	photosystem-ii	+	32022	33084	1062
psbC	gene	photosystem-ii	+	33031	34453	1422
trnS-UGA	gene	translation-rna	−	34707	34800	93
psbZ	gene	photosystem-ii	+	35125	35314	189
trnG-GCC	gene	translation-rna	+	35580	35651	71
trnfM-CAU	gene	translation-rna	−	35829	35903	74
rps14	gene	ribosomal-protein	−	36047	36350	303
psaB	gene	photosystem-i	−	36472	38677	2205
psaA	gene	photosystem-i	−	38702	40955	2253
ycf3	gene	other	−	41676	43601	1925
trnS-GGA	gene	translation-rna	+	44022	44109	87
rps4	gene	ribosomal-protein	−	44418	45024	606
trnT-UGU	gene	translation-rna	−	45372	45445	73
trnL-UAA	gene	translation-rna	+	46099	46666	567
trnF-GAA	gene	translation-rna	+	46964	47037	73
ndhJ	gene	nad-dehydrogenase	−	47668	48145	477
ndhK	gene	nad-dehydrogenase	−	48245	48920	675
ndhC	gene	nad-dehydrogenase	−	48972	49335	363
trnV-UAC	gene	translation-rna	−	50168	50834	666
trnM-CAU	gene	translation-rna	+	51015	51088	73
atpE	gene	atp-synthase	−	51294	51696	402
atpB	gene	atp-synthase	−	51692	53189	1497
rbcL	gene	other	+	53986	55435	1449
accD	gene	other	+	56161	57637	1476
psaI	gene	photosystem-i	+	58090	58201	111
ycf4	gene	other	+	58612	59167	555
cemA	gene	other	+	59821	60511	690
petA	gene	cytochrome	+	60744	61707	963
psbJ	gene	photosystem-ii	−	62610	62733	123
psbL	gene	photosystem-ii	−	62874	62991	117
psbF	gene	photosystem-ii	−	63014	63134	120
psbE	gene	photosystem-ii	−	63148	63400	252
petL	gene	cytochrome	+	64289	64385	96
petG	gene	cytochrome	+	64554	64668	114
trnW-CCA	gene	translation-rna	−	64790	64864	74
trnP-UGG	gene	translation-rna	−	65025	65099	74
psaJ	gene	photosystem-i	+	65390	65525	135
rpl33	gene	ribosomal-protein	+	65997	66198	201
rps18	gene	ribosomal-protein	+	66378	66684	306
rpl20	gene	ribosomal-protein	−	66930	67317	387
rps12	gene	ribosomal-protein	−	68150	96204	28054
rps12	gene	ribosomal-protein	+	68150	137139	68989
clpP	gene	other	−	68389	70334	1945
psbB	gene	photosystem-ii	+	70792	72319	1527
psbT	gene	photosystem-ii	+	72494	72596	102
psbN	gene	photosystem-ii	−	72661	72793	132
psbH	gene	photosystem-ii	+	72898	73120	222
petB	gene	cytochrome	+	73236	74573	1337
petD	gene	cytochrome	+	74766	75982	1216
rpoA	gene	rna-polymerase	−	76167	77181	1014
rps11	gene	ribosomal-protein	−	77251	77668	417
rpl36	gene	ribosomal-protein	−	77769	77883	114
infA	gene	other	−	77978	78212	234
rps8	gene	ribosomal-protein	−	78342	78747	405
rpl14	gene	ribosomal-protein	−	78915	79284	369
rpl16	gene	ribosomal-protein	−	79411	80647	1236
rps3	gene	ribosomal-protein	−	80803	81454	651
rpl22	gene	ribosomal-protein	−	81438	81906	468
rps19	gene	ribosomal-protein	−	81960	82239	279
rpl2	gene	ribosomal-protein	−	82291	83780	1489
rpl23	gene	ribosomal-protein	−	83798	84080	282
trnI-CAU	gene	translation-rna	−	84245	84319	74
ycf2	gene	other	+	84407	91163	6756
ycf15	gene	other	+	91253	91502	249
trnL-CAA	gene	translation-rna	−	91769	91850	81
ndhB	gene	nad-dehydrogenase	−	92398	94557	2159
rps7	gene	ribosomal-protein	−	94886	95354	468
trnV-GAC	gene	translation-rna	+	97781	97853	72
rrn16	gene	ribosomal-rna	+	98082	99573	1491
trnI-GAU	gene	translation-rna	+	99871	100891	1020
trnA-UGC	gene	translation-rna	+	100950	101827	877
rrn23	gene	ribosomal-rna	+	101988	104799	2811
rrn4.5	gene	ribosomal-rna	+	104905	105008	103
rrn5	gene	ribosomal-rna	+	105237	105358	121
trnR-ACG	gene	translation-rna	+	105610	105684	74
trnN-GUU	gene	translation-rna	−	106243	106315	72
ycf1	gene	other	+	106656	107811	1155
ndhF	gene	nad-dehydrogenase	−	107701	109942	2241
rpl32	gene	ribosomal-protein	+	110498	110675	177
trnL-UAG	gene	translation-rna	+	111075	111155	80
ccsA	gene	other	+	111248	112220	972
ndhD	gene	nad-dehydrogenase	−	112360	113890	1530
psaC	gene	photosystem-i	−	113982	114228	246
ndhE	gene	nad-dehydrogenase	−	114485	114791	306
ndhG	gene	nad-dehydrogenase	−	115024	115555	531
ndhI	gene	nad-dehydrogenase	−	115893	116400	507
ndhA	gene	nad-dehydrogenase	−	116475	118548	2073
ndhH	gene	nad-dehydrogenase	−	118549	119731	1182
rps15	gene	ribosomal-protein	−	119827	120100	273
ycf1	gene	other	−	120475	125890	5415
trnN-GUU	gene	translation-rna	+	126231	126303	72
trnR-ACG	gene	translation-rna	−	126862	126936	74
rrn5	gene	ribosomal-rna	−	127188	127309	121
rrn4.5	gene	ribosomal-rna	−	127538	127641	103
rrn23	gene	ribosomal-rna	−	127747	130558	2811
trnA-UGC	gene	translation-rna	−	130719	131596	877
trnI-GAU	gene	translation-rna	−	131655	132675	1020
rrn16	gene	ribosomal-rna	−	132973	134464	1491
trnV-GAC	gene	translation-rna	−	134693	134765	72
rps7	gene	ribosomal-protein	+	137192	137660	468
ndhB	gene	nad-dehydrogenase	+	137989	140148	2159
trnL-CAA	gene	translation-rna	+	140696	140777	81
ycf15	gene	other	−	141044	141293	249
ycf2	gene	other	−	141383	148139	6756
trnI-CAU	gene	translation-rna	+	148227	148301	74
rpl23	gene	ribosomal-protein	+	148466	148748	282
rpl2	gene	ribosomal-protein	+	148766	150255	1489
rps19	gene	ribosomal-protein	+	150307	150368	61

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomePV243805.1DNA · accDPV243805DNA · atpBPV243805DNA · matKPV243805DNA · ndhFPV243805DNA · psbAPV243805DNA · rbcLPV243805DNA · rps12PV243805DNA · ycf1PV243805