Ajuga lupulina chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PV243805.1 · 4–77 bp · −
psbA · PV243805.1 · 402–1,460 bp · −
trnK-UUU · PV243805.1 · 1,693–4,260 bp · −
matK · PV243805.1 · 1,959–3,521 bp · −
rps16 · PV243805.1 · 5,160–6,303 bp · −
trnQ-UUG · PV243805.1 · 7,125–7,196 bp · −
trnS-GCU · PV243805.1 · 8,326–8,413 bp · −
atpA · PV243805.1 · 10,210–11,733 bp · −
atpF · PV243805.1 · 11,848–13,087 bp · −
atpH · PV243805.1 · 13,444–13,689 bp · −
atpI · PV243805.1 · 14,665–15,408 bp · −
rps2 · PV243805.1 · 15,624–16,334 bp · −
rpoC2 · PV243805.1 · 16,566–20,720 bp · −
rpoC1 · PV243805.1 · 20,881–23,725 bp · −
rpoB · PV243805.1 · 23,752–26,964 bp · −
psbM · PV243805.1 · 29,157–29,261 bp · −
trnD-GUC · PV243805.1 · 29,776–29,849 bp · −
trnY-GUA · PV243805.1 · 29,949–30,032 bp · −
trnE-UUC · PV243805.1 · 30,092–30,164 bp · −
trnS-UGA · PV243805.1 · 34,708–34,800 bp · −
trnfM-CAU · PV243805.1 · 35,830–35,903 bp · −
rps14 · PV243805.1 · 36,048–36,350 bp · −
psaB · PV243805.1 · 36,473–38,677 bp · −
psaA · PV243805.1 · 38,703–40,955 bp · −
ycf3 · PV243805.1 · 41,677–43,601 bp · −
rps4 · PV243805.1 · 44,419–45,024 bp · −
trnT-UGU · PV243805.1 · 45,373–45,445 bp · −
ndhJ · PV243805.1 · 47,669–48,145 bp · −
ndhK · PV243805.1 · 48,246–48,920 bp · −
ndhC · PV243805.1 · 48,973–49,335 bp · −
trnV-UAC · PV243805.1 · 50,169–50,834 bp · −
atpE · PV243805.1 · 51,295–51,696 bp · −
atpB · PV243805.1 · 51,693–53,189 bp · −
psbJ · PV243805.1 · 62,611–62,733 bp · −
psbL · PV243805.1 · 62,875–62,991 bp · −
psbF · PV243805.1 · 63,015–63,134 bp · −
psbE · PV243805.1 · 63,149–63,400 bp · −
trnW-CCA · PV243805.1 · 64,791–64,864 bp · −
trnP-UGG · PV243805.1 · 65,026–65,099 bp · −
rpl20 · PV243805.1 · 66,931–67,317 bp · −
rps12 · PV243805.1 · 68,151–68,264 bp · −
rps12 · PV243805.1 · 95,408–96,204 bp · −
clpP · PV243805.1 · 68,390–70,334 bp · −
psbN · PV243805.1 · 72,662–72,793 bp · −
rpoA · PV243805.1 · 76,168–77,181 bp · −
rps11 · PV243805.1 · 77,252–77,668 bp · −
rpl36 · PV243805.1 · 77,770–77,883 bp · −
infA · PV243805.1 · 77,979–78,212 bp · −
rps8 · PV243805.1 · 78,343–78,747 bp · −
rpl14 · PV243805.1 · 78,916–79,284 bp · −
rpl16 · PV243805.1 · 79,412–80,647 bp · −
rps3 · PV243805.1 · 80,804–81,454 bp · −
rpl22 · PV243805.1 · 81,439–81,906 bp · −
rps19 · PV243805.1 · 81,961–82,239 bp · −
rpl2 · PV243805.1 · 82,292–83,780 bp · −
rpl23 · PV243805.1 · 83,799–84,080 bp · −
trnI-CAU · PV243805.1 · 84,246–84,319 bp · −
trnL-CAA · PV243805.1 · 91,770–91,850 bp · −
ndhB · PV243805.1 · 92,399–94,557 bp · −
rps7 · PV243805.1 · 94,887–95,354 bp · −
trnN-GUU · PV243805.1 · 106,244–106,315 bp · −
ndhF · PV243805.1 · 107,702–109,942 bp · −
ndhD · PV243805.1 · 112,361–113,890 bp · −
psaC · PV243805.1 · 113,983–114,228 bp · −
ndhE · PV243805.1 · 114,486–114,791 bp · −
ndhG · PV243805.1 · 115,025–115,555 bp · −
ndhI · PV243805.1 · 115,894–116,400 bp · −
ndhA · PV243805.1 · 116,476–118,548 bp · −
ndhH · PV243805.1 · 118,550–119,731 bp · −
rps15 · PV243805.1 · 119,828–120,100 bp · −
ycf1 · PV243805.1 · 120,476–125,890 bp · −
trnR-ACG · PV243805.1 · 126,863–126,936 bp · −
rrn5 · PV243805.1 · 127,189–127,309 bp · −
rrn4.5 · PV243805.1 · 127,539–127,641 bp · −
rrn23 · PV243805.1 · 127,748–130,558 bp · −
trnA-UGC · PV243805.1 · 130,720–131,596 bp · −
trnI-GAU · PV243805.1 · 131,656–132,675 bp · −
rrn16 · PV243805.1 · 132,974–134,464 bp · −
trnV-GAC · PV243805.1 · 134,694–134,765 bp · −
ycf15 · PV243805.1 · 141,045–141,293 bp · −
ycf2 · PV243805.1 · 141,384–148,139 bp · −
psbK · PV243805.1 · 7,534–7,719 bp · +
psbI · PV243805.1 · 8,100–8,210 bp · +
trnG-UCC · PV243805.1 · 9,087–9,847 bp · +
trnR-UCU · PV243805.1 · 10,033–10,104 bp · +
trnC-GCA · PV243805.1 · 28,132–28,202 bp · +
petN · PV243805.1 · 28,510–28,599 bp · +
trnT-GGU · PV243805.1 · 30,571–30,642 bp · +
psbD · PV243805.1 · 32,023–33,084 bp · +
psbC · PV243805.1 · 33,032–34,453 bp · +
psbZ · PV243805.1 · 35,126–35,314 bp · +
trnG-GCC · PV243805.1 · 35,581–35,651 bp · +
trnS-GGA · PV243805.1 · 44,023–44,109 bp · +
trnL-UAA · PV243805.1 · 46,100–46,666 bp · +
trnF-GAA · PV243805.1 · 46,965–47,037 bp · +
trnM-CAU · PV243805.1 · 51,016–51,088 bp · +
rbcL · PV243805.1 · 53,987–55,435 bp · +
accD · PV243805.1 · 56,162–57,637 bp · +
psaI · PV243805.1 · 58,091–58,201 bp · +
ycf4 · PV243805.1 · 58,613–59,167 bp · +
cemA · PV243805.1 · 59,822–60,511 bp · +
petA · PV243805.1 · 60,745–61,707 bp · +
petL · PV243805.1 · 64,290–64,385 bp · +
petG · PV243805.1 · 64,555–64,668 bp · +
psaJ · PV243805.1 · 65,391–65,525 bp · +
rpl33 · PV243805.1 · 65,998–66,198 bp · +
rps18 · PV243805.1 · 66,379–66,684 bp · +
rps12 · PV243805.1 · 136,343–137,139 bp · +
psbB · PV243805.1 · 70,793–72,319 bp · +
psbT · PV243805.1 · 72,495–72,596 bp · +
psbH · PV243805.1 · 72,899–73,120 bp · +
petB · PV243805.1 · 73,237–74,573 bp · +
petD · PV243805.1 · 74,767–75,982 bp · +
ycf2 · PV243805.1 · 84,408–91,163 bp · +
ycf15 · PV243805.1 · 91,254–91,502 bp · +
trnV-GAC · PV243805.1 · 97,782–97,853 bp · +
rrn16 · PV243805.1 · 98,083–99,573 bp · +
trnI-GAU · PV243805.1 · 99,872–100,891 bp · +
trnA-UGC · PV243805.1 · 100,951–101,827 bp · +
rrn23 · PV243805.1 · 101,989–104,799 bp · +
rrn4.5 · PV243805.1 · 104,906–105,008 bp · +
rrn5 · PV243805.1 · 105,238–105,358 bp · +
trnR-ACG · PV243805.1 · 105,611–105,684 bp · +
ycf1 · PV243805.1 · 106,657–107,811 bp · +
rpl32 · PV243805.1 · 110,499–110,675 bp · +
trnL-UAG · PV243805.1 · 111,076–111,155 bp · +
ccsA · PV243805.1 · 111,249–112,220 bp · +
trnN-GUU · PV243805.1 · 126,232–126,303 bp · +
rps7 · PV243805.1 · 137,193–137,660 bp · +
ndhB · PV243805.1 · 137,990–140,148 bp · +
trnL-CAA · PV243805.1 · 140,697–140,777 bp · +
trnI-CAU · PV243805.1 · 148,228–148,301 bp · +
rpl23 · PV243805.1 · 148,467–148,748 bp · +
rpl2 · PV243805.1 · 148,767–150,255 bp · +
rps19 · PV243805.1 · 150,308–150,368 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga lupulina
ANNOTATED PLASTOME
PV243805.1
150,368 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37592 75184 112776 150368 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 402 1460 1059 Locate
trnK-UUU gene − 1693 4260 2568 Locate
matK gene − 1959 3521 1563 Locate
rps16 gene − 5160 6303 1144 Locate
trnQ-UUG gene − 7125 7196 72 Locate
psbK gene + 7534 7719 186 Locate
psbI gene + 8100 8210 111 Locate
trnS-GCU gene − 8326 8413 88 Locate
trnG-UCC gene + 9087 9847 761 Locate
trnR-UCU gene + 10033 10104 72 Locate
atpA gene − 10210 11733 1524 Locate
atpF gene − 11848 13087 1240 Locate
atpH gene − 13444 13689 246 Locate
atpI gene − 14665 15408 744 Locate
rps2 gene − 15624 16334 711 Locate
rpoC2 gene − 16566 20720 4155 Locate
rpoC1 gene − 20881 23725 2845 Locate
rpoB gene − 23752 26964 3213 Locate
trnC-GCA gene + 28132 28202 71 Locate
petN gene + 28510 28599 90 Locate
psbM gene − 29157 29261 105 Locate
trnD-GUC gene − 29776 29849 74 Locate
trnY-GUA gene − 29949 30032 84 Locate
trnE-UUC gene − 30092 30164 73 Locate
trnT-GGU gene + 30571 30642 72 Locate
psbD gene + 32023 33084 1062 Locate
psbC gene + 33032 34453 1422 Locate
trnS-UGA gene − 34708 34800 93 Locate
psbZ gene + 35126 35314 189 Locate
trnG-GCC gene + 35581 35651 71 Locate
trnfM-CAU gene − 35830 35903 74 Locate
rps14 gene − 36048 36350 303 Locate
psaB gene − 36473 38677 2205 Locate
psaA gene − 38703 40955 2253 Locate
ycf3 gene − 41677 43601 1925 Locate
trnS-GGA gene + 44023 44109 87 Locate
rps4 gene − 44419 45024 606 Locate
trnT-UGU gene − 45373 45445 73 Locate
trnL-UAA gene + 46100 46666 567 Locate
trnF-GAA gene + 46965 47037 73 Locate
ndhJ gene − 47669 48145 477 Locate
ndhK gene − 48246 48920 675 Locate
ndhC gene − 48973 49335 363 Locate
trnV-UAC gene − 50169 50834 666 Locate
trnM-CAU gene + 51016 51088 73 Locate
atpE gene − 51295 51696 402 Locate
atpB gene − 51693 53189 1497 Locate
rbcL gene + 53987 55435 1449 Locate
accD gene + 56162 57637 1476 Locate
psaI gene + 58091 58201 111 Locate
ycf4 gene + 58613 59167 555 Locate
cemA gene + 59822 60511 690 Locate
petA gene + 60745 61707 963 Locate
psbJ gene − 62611 62733 123 Locate
psbL gene − 62875 62991 117 Locate
psbF gene − 63015 63134 120 Locate
psbE gene − 63149 63400 252 Locate
petL gene + 64290 64385 96 Locate
petG gene + 64555 64668 114 Locate
trnW-CCA gene − 64791 64864 74 Locate
trnP-UGG gene − 65026 65099 74 Locate
psaJ gene + 65391 65525 135 Locate
rpl33 gene + 65998 66198 201 Locate
rps18 gene + 66379 66684 306 Locate
rpl20 gene − 66931 67317 387 Locate
rps12 gene − 68151 68264 114 Locate
clpP gene − 68390 70334 1945 Locate
psbB gene + 70793 72319 1527 Locate
psbT gene + 72495 72596 102 Locate
psbN gene − 72662 72793 132 Locate
psbH gene + 72899 73120 222 Locate
petB gene + 73237 74573 1337 Locate
petD gene + 74767 75982 1216 Locate
rpoA gene − 76168 77181 1014 Locate
rps11 gene − 77252 77668 417 Locate
rpl36 gene − 77770 77883 114 Locate
infA gene − 77979 78212 234 Locate
rps8 gene − 78343 78747 405 Locate
rpl14 gene − 78916 79284 369 Locate
rpl16 gene − 79412 80647 1236 Locate
rps3 gene − 80804 81454 651 Locate
rpl22 gene − 81439 81906 468 Locate
rps19 gene − 81961 82239 279 Locate
rpl2 gene − 82292 83780 1489 Locate
rpl23 gene − 83799 84080 282 Locate
trnI-CAU gene − 84246 84319 74 Locate
ycf2 gene + 84408 91163 6756 Locate
ycf15 gene + 91254 91502 249 Locate
trnL-CAA gene − 91770 91850 81 Locate
ndhB gene − 92399 94557 2159 Locate
rps7 gene − 94887 95354 468 Locate
rps12 gene − 95408 96204 797 Locate
trnV-GAC gene + 97782 97853 72 Locate
rrn16 gene + 98083 99573 1491 Locate
trnI-GAU gene + 99872 100891 1020 Locate
trnA-UGC gene + 100951 101827 877 Locate
rrn23 gene + 101989 104799 2811 Locate
rrn4.5 gene + 104906 105008 103 Locate
rrn5 gene + 105238 105358 121 Locate
trnR-ACG gene + 105611 105684 74 Locate
trnN-GUU gene − 106244 106315 72 Locate
ycf1 gene + 106657 107811 1155 Locate
ndhF gene − 107702 109942 2241 Locate
rpl32 gene + 110499 110675 177 Locate
trnL-UAG gene + 111076 111155 80 Locate
ccsA gene + 111249 112220 972 Locate
ndhD gene − 112361 113890 1530 Locate
psaC gene − 113983 114228 246 Locate
ndhE gene − 114486 114791 306 Locate
ndhG gene − 115025 115555 531 Locate
ndhI gene − 115894 116400 507 Locate
ndhA gene − 116476 118548 2073 Locate
ndhH gene − 118550 119731 1182 Locate
rps15 gene − 119828 120100 273 Locate
ycf1 gene − 120476 125890 5415 Locate
trnN-GUU gene + 126232 126303 72 Locate
trnR-ACG gene − 126863 126936 74 Locate
rrn5 gene − 127189 127309 121 Locate
rrn4.5 gene − 127539 127641 103 Locate
rrn23 gene − 127748 130558 2811 Locate
trnA-UGC gene − 130720 131596 877 Locate
trnI-GAU gene − 131656 132675 1020 Locate
rrn16 gene − 132974 134464 1491 Locate
trnV-GAC gene − 134694 134765 72 Locate
rps12 gene + 136343 137139 797 Locate
rps7 gene + 137193 137660 468 Locate
ndhB gene + 137990 140148 2159 Locate
trnL-CAA gene + 140697 140777 81 Locate
ycf15 gene − 141045 141293 249 Locate
ycf2 gene − 141384 148139 6756 Locate
trnI-CAU gene + 148228 148301 74 Locate
rpl23 gene + 148467 148748 282 Locate
rpl2 gene + 148767 150255 1489 Locate
rps19 gene + 150308 150368 61 Locate
Status Available
Accession PV243805.1
Length 150,368 bp
GC content 38.3%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources