Ajuga nubigena chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_071844.1 · 4–77 bp · −
psbA · NC_071844.1 · 402–1,460 bp · −
trnK-UUU · NC_071844.1 · 1,693–4,261 bp · −
matK · NC_071844.1 · 1,995–3,521 bp · −
rps16 · NC_071844.1 · 5,155–6,297 bp · −
trnQ-UUG · NC_071844.1 · 7,128–7,199 bp · −
trnS-GCU · NC_071844.1 · 8,368–8,455 bp · −
atpA · NC_071844.1 · 10,250–11,773 bp · −
atpF · NC_071844.1 · 11,888–13,127 bp · −
atpH · NC_071844.1 · 13,484–13,729 bp · −
atpI · NC_071844.1 · 14,696–15,439 bp · −
rps2 · NC_071844.1 · 15,655–16,365 bp · −
rpoC2 · NC_071844.1 · 16,601–20,740 bp · −
rpoC1 · NC_071844.1 · 20,913–23,758 bp · −
rpoB · NC_071844.1 · 23,785–26,997 bp · −
psbM · NC_071844.1 · 29,168–29,272 bp · −
trnD-GUC · NC_071844.1 · 29,787–29,860 bp · −
trnY-GUA · NC_071844.1 · 29,960–30,043 bp · −
trnE-UUC · NC_071844.1 · 30,103–30,175 bp · −
trnS-UGA · NC_071844.1 · 34,740–34,832 bp · −
trnM-CAU · NC_071844.1 · 35,862–35,936 bp · −
rps14 · NC_071844.1 · 36,081–36,383 bp · −
psaB · NC_071844.1 · 36,506–38,710 bp · −
psaA · NC_071844.1 · 38,736–40,988 bp · −
ycf3 · NC_071844.1 · 41,684–43,584 bp · −
rps4 · NC_071844.1 · 44,407–45,012 bp · −
trnT-UGU · NC_071844.1 · 45,354–45,426 bp · −
ndhJ · NC_071844.1 · 47,645–48,121 bp · −
ndhK · NC_071844.1 · 48,222–48,905 bp · −
ndhC · NC_071844.1 · 48,958–49,320 bp · −
trnV-UAC · NC_071844.1 · 50,163–50,830 bp · −
atpE · NC_071844.1 · 51,283–51,684 bp · −
atpB · NC_071844.1 · 51,681–53,177 bp · −
psbJ · NC_071844.1 · 62,558–62,680 bp · −
psbL · NC_071844.1 · 62,822–62,938 bp · −
psbF · NC_071844.1 · 62,962–63,081 bp · −
psbE · NC_071844.1 · 63,096–63,347 bp · −
trnW-CCA · NC_071844.1 · 64,742–64,815 bp · −
trnP-UGG · NC_071844.1 · 64,977–65,050 bp · −
rpl20 · NC_071844.1 · 66,893–67,279 bp · −
rps12 · NC_071844.1 · 68,113–68,226 bp · −
rps12 · NC_071844.1 · 95,401–96,197 bp · −
clpP · NC_071844.1 · 68,542–70,295 bp · −
psbN · NC_071844.1 · 72,621–72,752 bp · −
rpoA · NC_071844.1 · 76,135–77,148 bp · −
rps11 · NC_071844.1 · 77,221–77,637 bp · −
rpl36 · NC_071844.1 · 77,739–77,852 bp · −
infA · NC_071844.1 · 77,948–78,181 bp · −
rps8 · NC_071844.1 · 78,315–78,719 bp · −
rpl14 · NC_071844.1 · 78,887–79,255 bp · −
rpl16 · NC_071844.1 · 79,383–80,621 bp · −
rps3 · NC_071844.1 · 80,779–81,429 bp · −
rpl22 · NC_071844.1 · 81,414–81,881 bp · −
rps19 · NC_071844.1 · 81,936–82,214 bp · −
rpl2 · NC_071844.1 · 82,267–83,755 bp · −
rpl23 · NC_071844.1 · 83,774–84,055 bp · −
trnI-CAU · NC_071844.1 · 84,221–84,294 bp · −
trnL-CAA · NC_071844.1 · 91,772–91,852 bp · −
ndhB · NC_071844.1 · 92,401–94,613 bp · −
rps7 · NC_071844.1 · 94,880–95,347 bp · −
rrn16 · NC_071844.1 · 98,078–99,567 bp · −
trnN-GUU · NC_071844.1 · 106,239–106,310 bp · −
ndhF · NC_071844.1 · 107,697–109,937 bp · −
ndhD · NC_071844.1 · 112,449–113,759 bp · −
psaC · NC_071844.1 · 114,072–114,317 bp · −
ndhE · NC_071844.1 · 114,575–114,880 bp · −
ndhG · NC_071844.1 · 115,116–115,646 bp · −
ndhI · NC_071844.1 · 115,993–116,499 bp · −
ndhA · NC_071844.1 · 116,575–118,647 bp · −
ndhH · NC_071844.1 · 118,649–119,830 bp · −
rps15 · NC_071844.1 · 119,927–120,199 bp · −
ycf1 · NC_071844.1 · 120,578–125,992 bp · −
trnR-ACG · NC_071844.1 · 126,965–127,038 bp · −
rrn5 · NC_071844.1 · 127,291–127,411 bp · −
rrn4.5 · NC_071844.1 · 127,641–127,743 bp · −
rrn23 · NC_071844.1 · 127,743–130,660 bp · −
trnA-UGC · NC_071844.1 · 130,822–131,698 bp · −
trnI-GAU · NC_071844.1 · 131,758–132,777 bp · −
trnV-GAC · NC_071844.1 · 134,798–134,869 bp · −
ycf15 · NC_071844.1 · 141,140–141,418 bp · −
ycf2 · NC_071844.1 · 141,479–148,261 bp · −
psbK · NC_071844.1 · 7,559–7,744 bp · +
psbI · NC_071844.1 · 8,126–8,236 bp · +
trnG-UCC · NC_071844.1 · 9,136–9,896 bp · +
trnR-UCU · NC_071844.1 · 10,073–10,144 bp · +
trnC-GCA · NC_071844.1 · 28,172–28,242 bp · +
petN · NC_071844.1 · 28,550–28,639 bp · +
trnT-GGU · NC_071844.1 · 30,582–30,653 bp · +
psbD · NC_071844.1 · 32,055–33,116 bp · +
psbC · NC_071844.1 · 33,064–34,485 bp · +
psbZ · NC_071844.1 · 35,158–35,346 bp · +
trnG-GCC · NC_071844.1 · 35,614–35,684 bp · +
trnS-GGA · NC_071844.1 · 44,011–44,097 bp · +
trnL-UAA · NC_071844.1 · 46,063–46,628 bp · +
trnF-GAA · NC_071844.1 · 46,927–47,000 bp · +
trnM-CAU · NC_071844.1 · 51,011–51,083 bp · +
rbcL · NC_071844.1 · 53,979–55,427 bp · +
accD · NC_071844.1 · 56,091–57,626 bp · +
psaI · NC_071844.1 · 58,057–58,167 bp · +
ycf4 · NC_071844.1 · 58,573–59,127 bp · +
cemA · NC_071844.1 · 59,780–60,469 bp · +
petA · NC_071844.1 · 60,703–61,665 bp · +
petL · NC_071844.1 · 64,237–64,332 bp · +
petG · NC_071844.1 · 64,502–64,615 bp · +
psaJ · NC_071844.1 · 65,352–65,486 bp · +
rpl33 · NC_071844.1 · 65,960–66,160 bp · +
rps18 · NC_071844.1 · 66,341–66,646 bp · +
rps12 · NC_071844.1 · 136,447–137,243 bp · +
psbB · NC_071844.1 · 70,752–72,278 bp · +
psbT · NC_071844.1 · 72,454–72,555 bp · +
psbH · NC_071844.1 · 72,858–73,079 bp · +
petB · NC_071844.1 · 73,207–74,541 bp · +
petD · NC_071844.1 · 74,735–75,949 bp · +
ycf2 · NC_071844.1 · 84,383–91,165 bp · +
ycf15 · NC_071844.1 · 91,226–91,504 bp · +
trnV-GAC · NC_071844.1 · 97,775–97,846 bp · +
trnI-GAU · NC_071844.1 · 99,867–100,886 bp · +
trnA-UGC · NC_071844.1 · 100,946–101,822 bp · +
rrn23 · NC_071844.1 · 101,984–104,901 bp · +
rrn4.5 · NC_071844.1 · 104,901–105,003 bp · +
rrn5 · NC_071844.1 · 105,233–105,353 bp · +
trnR-ACG · NC_071844.1 · 105,606–105,679 bp · +
ycf1 · NC_071844.1 · 106,652–107,806 bp · +
rpl32 · NC_071844.1 · 110,474–110,650 bp · +
trnL-UAG · NC_071844.1 · 111,050–111,129 bp · +
ccsA · NC_071844.1 · 111,223–112,194 bp · +
trnN-GUU · NC_071844.1 · 126,334–126,405 bp · +
rrn16 · NC_071844.1 · 133,077–134,566 bp · +
rps7 · NC_071844.1 · 137,297–137,764 bp · +
ndhB · NC_071844.1 · 138,031–140,243 bp · +
trnL-CAA · NC_071844.1 · 140,792–140,872 bp · +
trnI-CAU · NC_071844.1 · 148,350–148,423 bp · +
rpl23 · NC_071844.1 · 148,589–148,870 bp · +
rpl2 · NC_071844.1 · 148,889–150,377 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga nubigena
ANNOTATED PLASTOME
NC_071844.1
150,490 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37622 75245 112868 150490 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rrn16 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn16 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 402 1460 1059 Locate
trnK-UUU gene − 1693 4261 2569 Locate
matK gene − 1995 3521 1527 Locate
rps16 gene − 5155 6297 1143 Locate
trnQ-UUG gene − 7128 7199 72 Locate
psbK gene + 7559 7744 186 Locate
psbI gene + 8126 8236 111 Locate
trnS-GCU gene − 8368 8455 88 Locate
trnG-UCC gene + 9136 9896 761 Locate
trnR-UCU gene + 10073 10144 72 Locate
atpA gene − 10250 11773 1524 Locate
atpF gene − 11888 13127 1240 Locate
atpH gene − 13484 13729 246 Locate
atpI gene − 14696 15439 744 Locate
rps2 gene − 15655 16365 711 Locate
rpoC2 gene − 16601 20740 4140 Locate
rpoC1 gene − 20913 23758 2846 Locate
rpoB gene − 23785 26997 3213 Locate
trnC-GCA gene + 28172 28242 71 Locate
petN gene + 28550 28639 90 Locate
psbM gene − 29168 29272 105 Locate
trnD-GUC gene − 29787 29860 74 Locate
trnY-GUA gene − 29960 30043 84 Locate
trnE-UUC gene − 30103 30175 73 Locate
trnT-GGU gene + 30582 30653 72 Locate
psbD gene + 32055 33116 1062 Locate
psbC gene + 33064 34485 1422 Locate
trnS-UGA gene − 34740 34832 93 Locate
psbZ gene + 35158 35346 189 Locate
trnG-GCC gene + 35614 35684 71 Locate
trnM-CAU gene − 35862 35936 75 Locate
rps14 gene − 36081 36383 303 Locate
psaB gene − 36506 38710 2205 Locate
psaA gene − 38736 40988 2253 Locate
ycf3 gene − 41684 43584 1901 Locate
trnS-GGA gene + 44011 44097 87 Locate
rps4 gene − 44407 45012 606 Locate
trnT-UGU gene − 45354 45426 73 Locate
trnL-UAA gene + 46063 46628 566 Locate
trnF-GAA gene + 46927 47000 74 Locate
ndhJ gene − 47645 48121 477 Locate
ndhK gene − 48222 48905 684 Locate
ndhC gene − 48958 49320 363 Locate
trnV-UAC gene − 50163 50830 668 Locate
trnM-CAU gene + 51011 51083 73 Locate
atpE gene − 51283 51684 402 Locate
atpB gene − 51681 53177 1497 Locate
rbcL gene + 53979 55427 1449 Locate
accD gene + 56091 57626 1536 Locate
psaI gene + 58057 58167 111 Locate
ycf4 gene + 58573 59127 555 Locate
cemA gene + 59780 60469 690 Locate
petA gene + 60703 61665 963 Locate
psbJ gene − 62558 62680 123 Locate
psbL gene − 62822 62938 117 Locate
psbF gene − 62962 63081 120 Locate
psbE gene − 63096 63347 252 Locate
petL gene + 64237 64332 96 Locate
petG gene + 64502 64615 114 Locate
trnW-CCA gene − 64742 64815 74 Locate
trnP-UGG gene − 64977 65050 74 Locate
psaJ gene + 65352 65486 135 Locate
rpl33 gene + 65960 66160 201 Locate
rps18 gene + 66341 66646 306 Locate
rpl20 gene − 66893 67279 387 Locate
rps12 gene − 68113 68226 114 Locate
clpP gene − 68542 70295 1754 Locate
psbB gene + 70752 72278 1527 Locate
psbT gene + 72454 72555 102 Locate
psbN gene − 72621 72752 132 Locate
psbH gene + 72858 73079 222 Locate
petB gene + 73207 74541 1335 Locate
petD gene + 74735 75949 1215 Locate
rpoA gene − 76135 77148 1014 Locate
rps11 gene − 77221 77637 417 Locate
rpl36 gene − 77739 77852 114 Locate
infA gene − 77948 78181 234 Locate
rps8 gene − 78315 78719 405 Locate
rpl14 gene − 78887 79255 369 Locate
rpl16 gene − 79383 80621 1239 Locate
rps3 gene − 80779 81429 651 Locate
rpl22 gene − 81414 81881 468 Locate
rps19 gene − 81936 82214 279 Locate
rpl2 gene − 82267 83755 1489 Locate
rpl23 gene − 83774 84055 282 Locate
trnI-CAU gene − 84221 84294 74 Locate
ycf2 gene + 84383 91165 6783 Locate
ycf15 gene + 91226 91504 279 Locate
trnL-CAA gene − 91772 91852 81 Locate
ndhB gene − 92401 94613 2213 Locate
rps7 gene − 94880 95347 468 Locate
rps12 gene − 95401 96197 797 Locate
trnV-GAC gene + 97775 97846 72 Locate
rrn16 gene − 98078 99567 1490 Locate
trnI-GAU gene + 99867 100886 1020 Locate
trnA-UGC gene + 100946 101822 877 Locate
rrn23 gene + 101984 104901 2918 Locate
rrn4.5 gene + 104901 105003 103 Locate
rrn5 gene + 105233 105353 121 Locate
trnR-ACG gene + 105606 105679 74 Locate
trnN-GUU gene − 106239 106310 72 Locate
ycf1 gene + 106652 107806 1155 Locate
ndhF gene − 107697 109937 2241 Locate
rpl32 gene + 110474 110650 177 Locate
trnL-UAG gene + 111050 111129 80 Locate
ccsA gene + 111223 112194 972 Locate
ndhD gene − 112449 113759 1311 Locate
psaC gene − 114072 114317 246 Locate
ndhE gene − 114575 114880 306 Locate
ndhG gene − 115116 115646 531 Locate
ndhI gene − 115993 116499 507 Locate
ndhA gene − 116575 118647 2073 Locate
ndhH gene − 118649 119830 1182 Locate
rps15 gene − 119927 120199 273 Locate
ycf1 gene − 120578 125992 5415 Locate
trnN-GUU gene + 126334 126405 72 Locate
trnR-ACG gene − 126965 127038 74 Locate
rrn5 gene − 127291 127411 121 Locate
rrn4.5 gene − 127641 127743 103 Locate
rrn23 gene − 127743 130660 2918 Locate
trnA-UGC gene − 130822 131698 877 Locate
trnI-GAU gene − 131758 132777 1020 Locate
rrn16 gene + 133077 134566 1490 Locate
trnV-GAC gene − 134798 134869 72 Locate
rps12 gene + 136447 137243 797 Locate
rps7 gene + 137297 137764 468 Locate
ndhB gene + 138031 140243 2213 Locate
trnL-CAA gene + 140792 140872 81 Locate
ycf15 gene − 141140 141418 279 Locate
ycf2 gene − 141479 148261 6783 Locate
trnI-CAU gene + 148350 148423 74 Locate
rpl23 gene + 148589 148870 282 Locate
rpl2 gene + 148889 150377 1489 Locate
Status Available
Accession NC_071844.1
Length 150,490 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources