Ajuga pyramidalis subsp. pyramidalis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP024533.1 · 3–77 bp · −
psbA · PP024533.1 · 400–1,458 bp · −
trnK-UUU · PP024533.1 · 1,690–4,257 bp · −
matK · PP024533.1 · 1,993–3,519 bp · −
rps16 · PP024533.1 · 5,132–6,275 bp · −
trnQ-UUG · PP024533.1 · 7,053–7,124 bp · −
trnS-GCU · PP024533.1 · 8,252–8,339 bp · −
atpA · PP024533.1 · 10,151–11,674 bp · −
atpF · PP024533.1 · 11,752–12,992 bp · −
atpH · PP024533.1 · 13,348–13,593 bp · −
atpI · PP024533.1 · 14,551–15,294 bp · −
rps2 · PP024533.1 · 15,491–16,201 bp · −
rpoC2 · PP024533.1 · 16,494–20,561 bp · −
rpoC1 · PP024533.1 · 20,734–23,578 bp · −
rpoB · PP024533.1 · 23,605–26,817 bp · −
psbM · PP024533.1 · 28,941–29,045 bp · −
trnD-GUC · PP024533.1 · 29,550–29,626 bp · −
trnY-GUA · PP024533.1 · 29,724–29,809 bp · −
trnE-UUC · PP024533.1 · 29,868–29,940 bp · −
trnS-UGA · PP024533.1 · 34,490–34,582 bp · −
trnM-CAU · PP024533.1 · 35,603–35,677 bp · −
rps14 · PP024533.1 · 35,822–36,124 bp · −
psaB · PP024533.1 · 36,246–38,450 bp · −
psaA · PP024533.1 · 38,476–40,728 bp · −
ycf3 · PP024533.1 · 41,427–43,351 bp · −
rps4 · PP024533.1 · 44,171–44,776 bp · −
trnT-UGU · PP024533.1 · 45,138–45,212 bp · −
ndhJ · PP024533.1 · 47,455–47,931 bp · −
ndhK · PP024533.1 · 48,032–48,715 bp · −
ndhC · PP024533.1 · 48,768–49,130 bp · −
trnV-UAC · PP024533.1 · 49,924–50,588 bp · −
atpE · PP024533.1 · 51,041–51,442 bp · −
atpB · PP024533.1 · 51,439–52,935 bp · −
psbJ · PP024533.1 · 62,329–62,451 bp · −
psbL · PP024533.1 · 62,585–62,701 bp · −
psbF · PP024533.1 · 62,725–62,844 bp · −
psbE · PP024533.1 · 62,859–63,110 bp · −
trnW-CCA · PP024533.1 · 64,508–64,581 bp · −
trnP-UGG · PP024533.1 · 64,741–64,816 bp · −
rpl20 · PP024533.1 · 66,659–67,051 bp · −
rps12 · PP024533.1 · 67,886–67,999 bp · −
rps12 · PP024533.1 · 95,103–95,899 bp · −
clpP1 · PP024533.1 · 68,125–70,056 bp · −
psbN · PP024533.1 · 72,376–72,507 bp · −
rpoA · PP024533.1 · 75,882–76,895 bp · −
rps11 · PP024533.1 · 76,965–77,381 bp · −
rpl36 · PP024533.1 · 77,483–77,596 bp · −
infA · PP024533.1 · 77,692–77,925 bp · −
rps8 · PP024533.1 · 78,056–78,460 bp · −
rpl14 · PP024533.1 · 78,615–78,983 bp · −
rpl16 · PP024533.1 · 79,111–80,345 bp · −
rps3 · PP024533.1 · 80,508–81,158 bp · −
rpl22 · PP024533.1 · 81,143–81,610 bp · −
rps19 · PP024533.1 · 81,665–81,943 bp · −
rpl2 · PP024533.1 · 81,996–83,484 bp · −
rpl23 · PP024533.1 · 83,503–83,784 bp · −
trnM-CAU · PP024533.1 · 83,949–84,023 bp · −
trnL-CAA · PP024533.1 · 91,464–91,546 bp · −
ndhB · PP024533.1 · 92,094–94,306 bp · −
rps7 · PP024533.1 · 94,582–95,049 bp · −
trnN-GUU · PP024533.1 · 105,930–106,003 bp · −
ndhF · PP024533.1 · 107,389–109,629 bp · −
ndhD · PP024533.1 · 112,091–113,593 bp · −
psaC · PP024533.1 · 113,713–113,958 bp · −
ndhE · PP024533.1 · 114,229–114,534 bp · −
ndhG · PP024533.1 · 114,762–115,292 bp · −
ndhI · PP024533.1 · 115,661–116,167 bp · −
ndhA · PP024533.1 · 116,243–118,311 bp · −
ndhH · PP024533.1 · 118,313–119,548 bp · −
rps15 · PP024533.1 · 119,591–119,863 bp · −
ycf1 · PP024533.1 · 120,239–125,761 bp · −
trnR-ACG · PP024533.1 · 126,610–126,684 bp · −
rrn5 · PP024533.1 · 126,929–127,049 bp · −
rrn4.5 · PP024533.1 · 127,279–127,381 bp · −
rrn23 · PP024533.1 · 127,480–130,298 bp · −
trnA-UGC · PP024533.1 · 130,460–131,335 bp · −
trnE-UUC · PP024533.1 · 131,396–132,415 bp · −
rrn16 · PP024533.1 · 132,714–134,204 bp · −
trnV-GAC · PP024533.1 · 134,434–134,505 bp · −
ycf15 · PP024533.1 · 140,785–140,982 bp · −
ycf2 · PP024533.1 · 141,124–147,870 bp · −
psbK · PP024533.1 · 7,454–7,639 bp · +
psbI · PP024533.1 · 8,024–8,134 bp · +
trnG-UCC · PP024533.1 · 9,019–9,779 bp · +
trnR-UCU · PP024533.1 · 9,974–10,045 bp · +
trnC-GCA · PP024533.1 · 27,958–28,028 bp · +
petN · PP024533.1 · 28,336–28,425 bp · +
trnT-GGU · PP024533.1 · 30,356–30,429 bp · +
psbD · PP024533.1 · 31,805–32,866 bp · +
psbC · PP024533.1 · 32,814–34,235 bp · +
psbZ · PP024533.1 · 34,908–35,096 bp · +
trnG-GCC · PP024533.1 · 35,363–35,434 bp · +
trnS-GGA · PP024533.1 · 43,775–43,862 bp · +
trnL-UAA · PP024533.1 · 45,866–46,432 bp · +
trnF-GAA · PP024533.1 · 46,730–46,803 bp · +
trnM-CAU · PP024533.1 · 50,769–50,841 bp · +
rbcL · PP024533.1 · 53,714–55,183 bp · +
accD · PP024533.1 · 55,905–57,380 bp · +
psaI · PP024533.1 · 57,824–57,934 bp · +
ycf4 · PP024533.1 · 58,353–58,907 bp · +
cemA · PP024533.1 · 59,559–60,248 bp · +
petA · PP024533.1 · 60,464–61,426 bp · +
petL · PP024533.1 · 64,006–64,101 bp · +
petG · PP024533.1 · 64,271–64,384 bp · +
psaJ · PP024533.1 · 65,120–65,254 bp · +
rpl33 · PP024533.1 · 65,728–65,928 bp · +
rps18 · PP024533.1 · 66,109–66,414 bp · +
rps12 · PP024533.1 · 136,083–136,879 bp · +
psbB · PP024533.1 · 70,508–72,034 bp · +
psbT · PP024533.1 · 72,209–72,310 bp · +
psbH · PP024533.1 · 72,613–72,834 bp · +
petB · PP024533.1 · 72,951–74,288 bp · +
petD · PP024533.1 · 74,482–75,696 bp · +
ycf2 · PP024533.1 · 84,112–90,858 bp · +
ycf15 · PP024533.1 · 91,000–91,197 bp · +
trnV-GAC · PP024533.1 · 97,477–97,548 bp · +
rrn16 · PP024533.1 · 97,778–99,268 bp · +
trnE-UUC · PP024533.1 · 99,567–100,586 bp · +
trnA-UGC · PP024533.1 · 100,646–101,522 bp · +
rrn23 · PP024533.1 · 101,684–104,502 bp · +
rrn4.5 · PP024533.1 · 104,601–104,703 bp · +
rrn5 · PP024533.1 · 104,933–105,053 bp · +
trnR-ACG · PP024533.1 · 105,298–105,372 bp · +
ycf1 · PP024533.1 · 106,344–107,498 bp · +
rpl32 · PP024533.1 · 110,155–110,331 bp · +
trnL-UAG · PP024533.1 · 110,729–110,808 bp · +
ccsA · PP024533.1 · 110,903–111,874 bp · +
trnN-GUU · PP024533.1 · 125,979–126,052 bp · +
rps7 · PP024533.1 · 136,933–137,400 bp · +
ndhB · PP024533.1 · 137,676–139,888 bp · +
trnL-CAA · PP024533.1 · 140,436–140,518 bp · +
trnM-CAU · PP024533.1 · 147,959–148,033 bp · +
rpl23 · PP024533.1 · 148,198–148,479 bp · +
rpl2 · PP024533.1 · 148,498–149,986 bp · +
rps19 · PP024533.1 · 150,039–150,099 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga pyramidalis subsp. pyramidalis
ANNOTATED PLASTOME
PP024533.1
150,099 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37525 75050 112574 150099 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnE-UUC trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnE-UUC rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 77 75 Locate
psbA gene − 400 1458 1059 Locate
trnK-UUU gene − 1690 4257 2568 Locate
matK gene − 1993 3519 1527 Locate
rps16 gene − 5132 6275 1144 Locate
trnQ-UUG gene − 7053 7124 72 Locate
psbK gene + 7454 7639 186 Locate
psbI gene + 8024 8134 111 Locate
trnS-GCU gene − 8252 8339 88 Locate
trnG-UCC gene + 9019 9779 761 Locate
trnR-UCU gene + 9974 10045 72 Locate
atpA gene − 10151 11674 1524 Locate
atpF gene − 11752 12992 1241 Locate
atpH gene − 13348 13593 246 Locate
atpI gene − 14551 15294 744 Locate
rps2 gene − 15491 16201 711 Locate
rpoC2 gene − 16494 20561 4068 Locate
rpoC1 gene − 20734 23578 2845 Locate
rpoB gene − 23605 26817 3213 Locate
trnC-GCA gene + 27958 28028 71 Locate
petN gene + 28336 28425 90 Locate
psbM gene − 28941 29045 105 Locate
trnD-GUC gene − 29550 29626 77 Locate
trnY-GUA gene − 29724 29809 86 Locate
trnE-UUC gene − 29868 29940 73 Locate
trnT-GGU gene + 30356 30429 74 Locate
psbD gene + 31805 32866 1062 Locate
psbC gene + 32814 34235 1422 Locate
trnS-UGA gene − 34490 34582 93 Locate
psbZ gene + 34908 35096 189 Locate
trnG-GCC gene + 35363 35434 72 Locate
trnM-CAU gene − 35603 35677 75 Locate
rps14 gene − 35822 36124 303 Locate
psaB gene − 36246 38450 2205 Locate
psaA gene − 38476 40728 2253 Locate
ycf3 gene − 41427 43351 1925 Locate
trnS-GGA gene + 43775 43862 88 Locate
rps4 gene − 44171 44776 606 Locate
trnT-UGU gene − 45138 45212 75 Locate
trnL-UAA gene + 45866 46432 567 Locate
trnF-GAA gene + 46730 46803 74 Locate
ndhJ gene − 47455 47931 477 Locate
ndhK gene − 48032 48715 684 Locate
ndhC gene − 48768 49130 363 Locate
trnV-UAC gene − 49924 50588 665 Locate
trnM-CAU gene + 50769 50841 73 Locate
atpE gene − 51041 51442 402 Locate
atpB gene − 51439 52935 1497 Locate
rbcL gene + 53714 55183 1470 Locate
accD gene + 55905 57380 1476 Locate
psaI gene + 57824 57934 111 Locate
ycf4 gene + 58353 58907 555 Locate
cemA gene + 59559 60248 690 Locate
petA gene + 60464 61426 963 Locate
psbJ gene − 62329 62451 123 Locate
psbL gene − 62585 62701 117 Locate
psbF gene − 62725 62844 120 Locate
psbE gene − 62859 63110 252 Locate
petL gene + 64006 64101 96 Locate
petG gene + 64271 64384 114 Locate
trnW-CCA gene − 64508 64581 74 Locate
trnP-UGG gene − 64741 64816 76 Locate
psaJ gene + 65120 65254 135 Locate
rpl33 gene + 65728 65928 201 Locate
rps18 gene + 66109 66414 306 Locate
rpl20 gene − 66659 67051 393 Locate
rps12 gene − 67886 67999 114 Locate
clpP1 gene − 68125 70056 1932 Locate
psbB gene + 70508 72034 1527 Locate
psbT gene + 72209 72310 102 Locate
psbN gene − 72376 72507 132 Locate
psbH gene + 72613 72834 222 Locate
petB gene + 72951 74288 1338 Locate
petD gene + 74482 75696 1215 Locate
rpoA gene − 75882 76895 1014 Locate
rps11 gene − 76965 77381 417 Locate
rpl36 gene − 77483 77596 114 Locate
infA gene − 77692 77925 234 Locate
rps8 gene − 78056 78460 405 Locate
rpl14 gene − 78615 78983 369 Locate
rpl16 gene − 79111 80345 1235 Locate
rps3 gene − 80508 81158 651 Locate
rpl22 gene − 81143 81610 468 Locate
rps19 gene − 81665 81943 279 Locate
rpl2 gene − 81996 83484 1489 Locate
rpl23 gene − 83503 83784 282 Locate
trnM-CAU gene − 83949 84023 75 Locate
ycf2 gene + 84112 90858 6747 Locate
ycf15 gene + 91000 91197 198 Locate
trnL-CAA gene − 91464 91546 83 Locate
ndhB gene − 92094 94306 2213 Locate
rps7 gene − 94582 95049 468 Locate
rps12 gene − 95103 95899 797 Locate
trnV-GAC gene + 97477 97548 72 Locate
rrn16 gene + 97778 99268 1491 Locate
trnE-UUC gene + 99567 100586 1020 Locate
trnA-UGC gene + 100646 101522 877 Locate
rrn23 gene + 101684 104502 2819 Locate
rrn4.5 gene + 104601 104703 103 Locate
rrn5 gene + 104933 105053 121 Locate
trnR-ACG gene + 105298 105372 75 Locate
trnN-GUU gene − 105930 106003 74 Locate
ycf1 gene + 106344 107498 1155 Locate
ndhF gene − 107389 109629 2241 Locate
rpl32 gene + 110155 110331 177 Locate
trnL-UAG gene + 110729 110808 80 Locate
ccsA gene + 110903 111874 972 Locate
ndhD gene − 112091 113593 1503 Locate
psaC gene − 113713 113958 246 Locate
ndhE gene − 114229 114534 306 Locate
ndhG gene − 114762 115292 531 Locate
ndhI gene − 115661 116167 507 Locate
ndhA gene − 116243 118311 2069 Locate
ndhH gene − 118313 119548 1236 Locate
rps15 gene − 119591 119863 273 Locate
ycf1 gene − 120239 125761 5523 Locate
trnN-GUU gene + 125979 126052 74 Locate
trnR-ACG gene − 126610 126684 75 Locate
rrn5 gene − 126929 127049 121 Locate
rrn4.5 gene − 127279 127381 103 Locate
rrn23 gene − 127480 130298 2819 Locate
trnA-UGC gene − 130460 131335 876 Locate
trnE-UUC gene − 131396 132415 1020 Locate
rrn16 gene − 132714 134204 1491 Locate
trnV-GAC gene − 134434 134505 72 Locate
rps12 gene + 136083 136879 797 Locate
rps7 gene + 136933 137400 468 Locate
ndhB gene + 137676 139888 2213 Locate
trnL-CAA gene + 140436 140518 83 Locate
ycf15 gene − 140785 140982 198 Locate
ycf2 gene − 141124 147870 6747 Locate
trnM-CAU gene + 147959 148033 75 Locate
rpl23 gene + 148198 148479 282 Locate
rpl2 gene + 148498 149986 1489 Locate
rps19 gene + 150039 150099 61 Locate
Status Available
Accession PP024533.1
Length 150,099 bp
GC content 38.3%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources