Coordinate-aware organelle record

Ajuga reptans chloroplast genome

Available PP024534.1 149,976 bp 134 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

134 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	3	78	75
psbA	gene	photosystem-ii	−	304	1363	1059
trnK-UUU	gene	translation-rna	−	1594	4162	2568
matK	gene	other	−	1861	3424	1563
rps16	gene	ribosomal-protein	−	5026	6173	1147
trnQ-UUG	gene	translation-rna	−	6950	7022	72
psbK	gene	photosystem-ii	+	7351	7537	186
psbI	gene	photosystem-ii	+	7922	8033	111
trnS-GCU	gene	translation-rna	−	8149	8237	88
trnG-UCC	gene	translation-rna	+	8917	9678	761
trnR-UCU	gene	translation-rna	+	9859	9931	72
atpA	gene	atp-synthase	−	10036	11560	1524
atpF	gene	atp-synthase	−	11637	12877	1240
atpH	gene	atp-synthase	−	13231	13477	246
atpI	gene	atp-synthase	−	14431	15175	744
rps2	gene	ribosomal-protein	−	15371	16082	711
rpoC2	gene	rna-polymerase	−	16374	20442	4068
rpoC1	gene	rna-polymerase	−	20614	23459	2845
rpoB	gene	rna-polymerase	−	23485	26698	3213
trnC-GCA	gene	translation-rna	+	27838	27909	71
petN	gene	cytochrome	+	28216	28306	90
psbM	gene	photosystem-ii	−	28863	28968	105
trnD-GUC	gene	translation-rna	−	29472	29549	77
trnY-GUA	gene	translation-rna	−	29646	29732	86
trnE-UUC	gene	translation-rna	−	29790	29863	73
trnT-GGU	gene	translation-rna	+	30276	30350	74
psbD	gene	photosystem-ii	+	31740	32802	1062
psbC	gene	photosystem-ii	+	32749	34171	1422
trnS-UGA	gene	translation-rna	−	34425	34518	93
psbZ	gene	photosystem-ii	+	34843	35032	189
trnG-GCC	gene	translation-rna	+	35298	35370	72
trnM-CAU	gene	translation-rna	−	35537	35612	75
rps14	gene	ribosomal-protein	−	35756	36059	303
psaB	gene	photosystem-i	−	36180	38385	2205
psaA	gene	photosystem-i	−	38410	40663	2253
ycf3	gene	other	−	41367	43276	1909
trnS-GGA	gene	translation-rna	+	43689	43777	88
rps4	gene	ribosomal-protein	−	44085	44691	606
trnT-UGU	gene	translation-rna	−	45020	45095	75
trnL-UAA	gene	translation-rna	+	45747	46315	568
trnF-GAA	gene	translation-rna	+	46612	46686	74
ndhJ	gene	nad-dehydrogenase	−	47337	47814	477
ndhK	gene	nad-dehydrogenase	−	47914	48598	684
ndhC	gene	nad-dehydrogenase	−	48650	49013	363
trnV-UAC	gene	translation-rna	−	49806	50471	665
trnM-CAU	gene	translation-rna	+	50651	50724	73
atpE	gene	atp-synthase	−	50923	51325	402
atpB	gene	atp-synthase	−	51321	52818	1497
rbcL	gene	other	+	53597	55067	1470
accD	gene	other	+	55789	57265	1476
psaI	gene	photosystem-i	+	57718	57829	111
ycf4	gene	other	+	58246	58801	555
cemA	gene	other	+	59451	60141	690
petA	gene	cytochrome	+	60356	61319	963
psbJ	gene	photosystem-ii	−	62221	62344	123
psbL	gene	photosystem-ii	−	62477	62594	117
psbF	gene	photosystem-ii	−	62617	62737	120
psbE	gene	photosystem-ii	−	62751	63003	252
petL	gene	cytochrome	+	63888	63984	96
petG	gene	cytochrome	+	64153	64267	114
trnW-CCA	gene	translation-rna	−	64387	64461	74
trnP-UGG	gene	translation-rna	−	64620	64696	76
psaJ	gene	photosystem-i	+	65011	65146	135
rpl33	gene	ribosomal-protein	+	65619	65820	201
rps18	gene	ribosomal-protein	+	66000	66306	306
rpl20	gene	ribosomal-protein	−	66551	66938	387
rps12	gene	ribosomal-protein	−	67772	95814	28042
rps12	gene	ribosomal-protein	+	67772	136757	68985
clpP1	gene	other	−	68007	69949	1942
psbB	gene	photosystem-ii	+	70402	71929	1527
psbT	gene	photosystem-ii	+	72103	72205	102
psbN	gene	photosystem-ii	−	72270	72402	132
psbH	gene	photosystem-ii	+	72507	72729	222
petB	gene	cytochrome	+	72845	74181	1336
petD	gene	cytochrome	+	74393	75608	1215
rpoA	gene	rna-polymerase	−	75793	76807	1014
rps11	gene	ribosomal-protein	−	76877	77294	417
rpl36	gene	ribosomal-protein	−	77395	77509	114
infA	gene	other	−	77604	77838	234
rps8	gene	ribosomal-protein	−	77968	78373	405
rpl14	gene	ribosomal-protein	−	78527	78896	369
rpl16	gene	ribosomal-protein	−	79023	80259	1236
rps3	gene	ribosomal-protein	−	80422	81073	651
rpl22	gene	ribosomal-protein	−	81057	81525	468
rps19	gene	ribosomal-protein	−	81579	81858	279
rpl2	gene	ribosomal-protein	−	81910	83399	1489
rpl23	gene	ribosomal-protein	−	83417	83699	282
trnM-CAU	gene	translation-rna	−	83863	83938	75
ycf2	gene	other	+	84026	90773	6747
ycf15	gene	other	+	90914	91112	198
trnL-CAA	gene	translation-rna	−	91378	91461	83
ndhB	gene	nad-dehydrogenase	−	92008	94221	2213
rps7	gene	ribosomal-protein	−	94496	94964	468
trnV-GAC	gene	translation-rna	+	97391	97463	72
rrn16	gene	ribosomal-rna	+	97693	99184	1491
trnE-UUC	gene	translation-rna	+	99482	100502	1020
trnA-UGC	gene	translation-rna	+	100561	101438	877
rrn23	gene	ribosomal-rna	+	101599	104418	2819
rrn4.5	gene	ribosomal-rna	+	104516	104619	103
rrn5	gene	ribosomal-rna	+	104848	104969	121
trnR-ACG	gene	translation-rna	+	105213	105288	75
trnN-GUU	gene	translation-rna	−	105845	105919	74
ycf1	gene	other	+	106259	107414	1155
ndhF	gene	nad-dehydrogenase	−	107304	109545	2241
rpl32	gene	ribosomal-protein	+	110070	110247	177
trnL-UAG	gene	translation-rna	+	110637	110717	80
ccsA	gene	other	+	110811	111783	972
ndhD	gene	nad-dehydrogenase	−	111999	113502	1503
psaC	gene	photosystem-i	−	113621	113867	246
ndhE	gene	nad-dehydrogenase	−	114117	114423	306
ndhG	gene	nad-dehydrogenase	−	114650	115181	531
ndhI	gene	nad-dehydrogenase	−	115534	116041	507
ndhA	gene	nad-dehydrogenase	−	116116	118185	2069
ndhH	gene	nad-dehydrogenase	−	118186	119422	1236
rps15	gene	ribosomal-protein	−	119464	119737	273
ycf1	gene	other	−	120112	125638	5526
trnN-GUU	gene	translation-rna	+	125855	125929	74
trnR-ACG	gene	translation-rna	−	126486	126561	75
rrn5	gene	ribosomal-rna	−	126805	126926	121
rrn4.5	gene	ribosomal-rna	−	127155	127258	103
rrn23	gene	ribosomal-rna	−	127356	130175	2819
trnA-UGC	gene	translation-rna	−	130336	131212	876
trnE-UUC	gene	translation-rna	−	131272	132292	1020
rrn16	gene	ribosomal-rna	−	132590	134081	1491
trnV-GAC	gene	translation-rna	−	134311	134383	72
rps7	gene	ribosomal-protein	+	136810	137278	468
ndhB	gene	nad-dehydrogenase	+	137553	139766	2213
trnL-CAA	gene	translation-rna	+	140313	140396	83
ycf15	gene	other	−	140662	140860	198
ycf2	gene	other	−	141001	147748	6747
trnM-CAU	gene	translation-rna	+	147836	147911	75
rpl23	gene	ribosomal-protein	+	148075	148357	282
rpl2	gene	ribosomal-protein	+	148375	149864	1489
rps19	gene	ribosomal-protein	+	149916	149976	60

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomePP024534.1DNA · accDPP024534DNA · atpBPP024534DNA · matKPP024534DNA · ndhFPP024534DNA · psbAPP024534DNA · rbcLPP024534DNA · rps12PP024534DNA · ycf1PP024534