Ajuga reptans chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP024534.1 · 4–78 bp · −
psbA · PP024534.1 · 305–1,363 bp · −
trnK-UUU · PP024534.1 · 1,595–4,162 bp · −
matK · PP024534.1 · 1,862–3,424 bp · −
rps16 · PP024534.1 · 5,027–6,173 bp · −
trnQ-UUG · PP024534.1 · 6,951–7,022 bp · −
trnS-GCU · PP024534.1 · 8,150–8,237 bp · −
atpA · PP024534.1 · 10,037–11,560 bp · −
atpF · PP024534.1 · 11,638–12,877 bp · −
atpH · PP024534.1 · 13,232–13,477 bp · −
atpI · PP024534.1 · 14,432–15,175 bp · −
rps2 · PP024534.1 · 15,372–16,082 bp · −
rpoC2 · PP024534.1 · 16,375–20,442 bp · −
rpoC1 · PP024534.1 · 20,615–23,459 bp · −
rpoB · PP024534.1 · 23,486–26,698 bp · −
psbM · PP024534.1 · 28,864–28,968 bp · −
trnD-GUC · PP024534.1 · 29,473–29,549 bp · −
trnY-GUA · PP024534.1 · 29,647–29,732 bp · −
trnE-UUC · PP024534.1 · 29,791–29,863 bp · −
trnS-UGA · PP024534.1 · 34,426–34,518 bp · −
trnM-CAU · PP024534.1 · 35,538–35,612 bp · −
rps14 · PP024534.1 · 35,757–36,059 bp · −
psaB · PP024534.1 · 36,181–38,385 bp · −
psaA · PP024534.1 · 38,411–40,663 bp · −
ycf3 · PP024534.1 · 41,368–43,276 bp · −
rps4 · PP024534.1 · 44,086–44,691 bp · −
trnT-UGU · PP024534.1 · 45,021–45,095 bp · −
ndhJ · PP024534.1 · 47,338–47,814 bp · −
ndhK · PP024534.1 · 47,915–48,598 bp · −
ndhC · PP024534.1 · 48,651–49,013 bp · −
trnV-UAC · PP024534.1 · 49,807–50,471 bp · −
atpE · PP024534.1 · 50,924–51,325 bp · −
atpB · PP024534.1 · 51,322–52,818 bp · −
psbJ · PP024534.1 · 62,222–62,344 bp · −
psbL · PP024534.1 · 62,478–62,594 bp · −
psbF · PP024534.1 · 62,618–62,737 bp · −
psbE · PP024534.1 · 62,752–63,003 bp · −
trnW-CCA · PP024534.1 · 64,388–64,461 bp · −
trnP-UGG · PP024534.1 · 64,621–64,696 bp · −
rpl20 · PP024534.1 · 66,552–66,938 bp · −
rps12 · PP024534.1 · 67,773–67,886 bp · −
rps12 · PP024534.1 · 95,018–95,814 bp · −
clpP1 · PP024534.1 · 68,008–69,949 bp · −
psbN · PP024534.1 · 72,271–72,402 bp · −
rpoA · PP024534.1 · 75,794–76,807 bp · −
rps11 · PP024534.1 · 76,878–77,294 bp · −
rpl36 · PP024534.1 · 77,396–77,509 bp · −
infA · PP024534.1 · 77,605–77,838 bp · −
rps8 · PP024534.1 · 77,969–78,373 bp · −
rpl14 · PP024534.1 · 78,528–78,896 bp · −
rpl16 · PP024534.1 · 79,024–80,259 bp · −
rps3 · PP024534.1 · 80,423–81,073 bp · −
rpl22 · PP024534.1 · 81,058–81,525 bp · −
rps19 · PP024534.1 · 81,580–81,858 bp · −
rpl2 · PP024534.1 · 81,911–83,399 bp · −
rpl23 · PP024534.1 · 83,418–83,699 bp · −
trnM-CAU · PP024534.1 · 83,864–83,938 bp · −
trnL-CAA · PP024534.1 · 91,379–91,461 bp · −
ndhB · PP024534.1 · 92,009–94,221 bp · −
rps7 · PP024534.1 · 94,497–94,964 bp · −
trnN-GUU · PP024534.1 · 105,846–105,919 bp · −
ndhF · PP024534.1 · 107,305–109,545 bp · −
ndhD · PP024534.1 · 112,000–113,502 bp · −
psaC · PP024534.1 · 113,622–113,867 bp · −
ndhE · PP024534.1 · 114,118–114,423 bp · −
ndhG · PP024534.1 · 114,651–115,181 bp · −
ndhI · PP024534.1 · 115,535–116,041 bp · −
ndhA · PP024534.1 · 116,117–118,185 bp · −
ndhH · PP024534.1 · 118,187–119,422 bp · −
rps15 · PP024534.1 · 119,465–119,737 bp · −
ycf1 · PP024534.1 · 120,113–125,638 bp · −
trnR-ACG · PP024534.1 · 126,487–126,561 bp · −
rrn5 · PP024534.1 · 126,806–126,926 bp · −
rrn4.5 · PP024534.1 · 127,156–127,258 bp · −
rrn23 · PP024534.1 · 127,357–130,175 bp · −
trnA-UGC · PP024534.1 · 130,337–131,212 bp · −
trnE-UUC · PP024534.1 · 131,273–132,292 bp · −
rrn16 · PP024534.1 · 132,591–134,081 bp · −
trnV-GAC · PP024534.1 · 134,312–134,383 bp · −
ycf15 · PP024534.1 · 140,663–140,860 bp · −
ycf2 · PP024534.1 · 141,002–147,748 bp · −
psbK · PP024534.1 · 7,352–7,537 bp · +
psbI · PP024534.1 · 7,923–8,033 bp · +
trnG-UCC · PP024534.1 · 8,918–9,678 bp · +
trnR-UCU · PP024534.1 · 9,860–9,931 bp · +
trnC-GCA · PP024534.1 · 27,839–27,909 bp · +
petN · PP024534.1 · 28,217–28,306 bp · +
trnT-GGU · PP024534.1 · 30,277–30,350 bp · +
psbD · PP024534.1 · 31,741–32,802 bp · +
psbC · PP024534.1 · 32,750–34,171 bp · +
psbZ · PP024534.1 · 34,844–35,032 bp · +
trnG-GCC · PP024534.1 · 35,299–35,370 bp · +
trnS-GGA · PP024534.1 · 43,690–43,777 bp · +
trnL-UAA · PP024534.1 · 45,748–46,315 bp · +
trnF-GAA · PP024534.1 · 46,613–46,686 bp · +
trnM-CAU · PP024534.1 · 50,652–50,724 bp · +
rbcL · PP024534.1 · 53,598–55,067 bp · +
accD · PP024534.1 · 55,790–57,265 bp · +
psaI · PP024534.1 · 57,719–57,829 bp · +
ycf4 · PP024534.1 · 58,247–58,801 bp · +
cemA · PP024534.1 · 59,452–60,141 bp · +
petA · PP024534.1 · 60,357–61,319 bp · +
petL · PP024534.1 · 63,889–63,984 bp · +
petG · PP024534.1 · 64,154–64,267 bp · +
psaJ · PP024534.1 · 65,012–65,146 bp · +
rpl33 · PP024534.1 · 65,620–65,820 bp · +
rps18 · PP024534.1 · 66,001–66,306 bp · +
rps12 · PP024534.1 · 135,961–136,757 bp · +
psbB · PP024534.1 · 70,403–71,929 bp · +
psbT · PP024534.1 · 72,104–72,205 bp · +
psbH · PP024534.1 · 72,508–72,729 bp · +
petB · PP024534.1 · 72,846–74,181 bp · +
petD · PP024534.1 · 74,394–75,608 bp · +
ycf2 · PP024534.1 · 84,027–90,773 bp · +
ycf15 · PP024534.1 · 90,915–91,112 bp · +
trnV-GAC · PP024534.1 · 97,392–97,463 bp · +
rrn16 · PP024534.1 · 97,694–99,184 bp · +
trnE-UUC · PP024534.1 · 99,483–100,502 bp · +
trnA-UGC · PP024534.1 · 100,562–101,438 bp · +
rrn23 · PP024534.1 · 101,600–104,418 bp · +
rrn4.5 · PP024534.1 · 104,517–104,619 bp · +
rrn5 · PP024534.1 · 104,849–104,969 bp · +
trnR-ACG · PP024534.1 · 105,214–105,288 bp · +
ycf1 · PP024534.1 · 106,260–107,414 bp · +
rpl32 · PP024534.1 · 110,071–110,247 bp · +
trnL-UAG · PP024534.1 · 110,638–110,717 bp · +
ccsA · PP024534.1 · 110,812–111,783 bp · +
trnN-GUU · PP024534.1 · 125,856–125,929 bp · +
rps7 · PP024534.1 · 136,811–137,278 bp · +
ndhB · PP024534.1 · 137,554–139,766 bp · +
trnL-CAA · PP024534.1 · 140,314–140,396 bp · +
trnM-CAU · PP024534.1 · 147,837–147,911 bp · +
rpl23 · PP024534.1 · 148,076–148,357 bp · +
rpl2 · PP024534.1 · 148,376–149,864 bp · +
rps19 · PP024534.1 · 149,917–149,976 bp · +
0 kb
12 kb
24 kb
36 kb
48 kb
60 kb
72 kb
84 kb
96 kb
108 kb
120 kb
132 kb
144 kb
Ajuga reptans
ANNOTATED PLASTOME
PP024534.1
149,976 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37494 74988 112482 149976 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnE-UUC trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnE-UUC rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 305 1363 1059 Locate
trnK-UUU gene − 1595 4162 2568 Locate
matK gene − 1862 3424 1563 Locate
rps16 gene − 5027 6173 1147 Locate
trnQ-UUG gene − 6951 7022 72 Locate
psbK gene + 7352 7537 186 Locate
psbI gene + 7923 8033 111 Locate
trnS-GCU gene − 8150 8237 88 Locate
trnG-UCC gene + 8918 9678 761 Locate
trnR-UCU gene + 9860 9931 72 Locate
atpA gene − 10037 11560 1524 Locate
atpF gene − 11638 12877 1240 Locate
atpH gene − 13232 13477 246 Locate
atpI gene − 14432 15175 744 Locate
rps2 gene − 15372 16082 711 Locate
rpoC2 gene − 16375 20442 4068 Locate
rpoC1 gene − 20615 23459 2845 Locate
rpoB gene − 23486 26698 3213 Locate
trnC-GCA gene + 27839 27909 71 Locate
petN gene + 28217 28306 90 Locate
psbM gene − 28864 28968 105 Locate
trnD-GUC gene − 29473 29549 77 Locate
trnY-GUA gene − 29647 29732 86 Locate
trnE-UUC gene − 29791 29863 73 Locate
trnT-GGU gene + 30277 30350 74 Locate
psbD gene + 31741 32802 1062 Locate
psbC gene + 32750 34171 1422 Locate
trnS-UGA gene − 34426 34518 93 Locate
psbZ gene + 34844 35032 189 Locate
trnG-GCC gene + 35299 35370 72 Locate
trnM-CAU gene − 35538 35612 75 Locate
rps14 gene − 35757 36059 303 Locate
psaB gene − 36181 38385 2205 Locate
psaA gene − 38411 40663 2253 Locate
ycf3 gene − 41368 43276 1909 Locate
trnS-GGA gene + 43690 43777 88 Locate
rps4 gene − 44086 44691 606 Locate
trnT-UGU gene − 45021 45095 75 Locate
trnL-UAA gene + 45748 46315 568 Locate
trnF-GAA gene + 46613 46686 74 Locate
ndhJ gene − 47338 47814 477 Locate
ndhK gene − 47915 48598 684 Locate
ndhC gene − 48651 49013 363 Locate
trnV-UAC gene − 49807 50471 665 Locate
trnM-CAU gene + 50652 50724 73 Locate
atpE gene − 50924 51325 402 Locate
atpB gene − 51322 52818 1497 Locate
rbcL gene + 53598 55067 1470 Locate
accD gene + 55790 57265 1476 Locate
psaI gene + 57719 57829 111 Locate
ycf4 gene + 58247 58801 555 Locate
cemA gene + 59452 60141 690 Locate
petA gene + 60357 61319 963 Locate
psbJ gene − 62222 62344 123 Locate
psbL gene − 62478 62594 117 Locate
psbF gene − 62618 62737 120 Locate
psbE gene − 62752 63003 252 Locate
petL gene + 63889 63984 96 Locate
petG gene + 64154 64267 114 Locate
trnW-CCA gene − 64388 64461 74 Locate
trnP-UGG gene − 64621 64696 76 Locate
psaJ gene + 65012 65146 135 Locate
rpl33 gene + 65620 65820 201 Locate
rps18 gene + 66001 66306 306 Locate
rpl20 gene − 66552 66938 387 Locate
rps12 gene − 67773 67886 114 Locate
clpP1 gene − 68008 69949 1942 Locate
psbB gene + 70403 71929 1527 Locate
psbT gene + 72104 72205 102 Locate
psbN gene − 72271 72402 132 Locate
psbH gene + 72508 72729 222 Locate
petB gene + 72846 74181 1336 Locate
petD gene + 74394 75608 1215 Locate
rpoA gene − 75794 76807 1014 Locate
rps11 gene − 76878 77294 417 Locate
rpl36 gene − 77396 77509 114 Locate
infA gene − 77605 77838 234 Locate
rps8 gene − 77969 78373 405 Locate
rpl14 gene − 78528 78896 369 Locate
rpl16 gene − 79024 80259 1236 Locate
rps3 gene − 80423 81073 651 Locate
rpl22 gene − 81058 81525 468 Locate
rps19 gene − 81580 81858 279 Locate
rpl2 gene − 81911 83399 1489 Locate
rpl23 gene − 83418 83699 282 Locate
trnM-CAU gene − 83864 83938 75 Locate
ycf2 gene + 84027 90773 6747 Locate
ycf15 gene + 90915 91112 198 Locate
trnL-CAA gene − 91379 91461 83 Locate
ndhB gene − 92009 94221 2213 Locate
rps7 gene − 94497 94964 468 Locate
rps12 gene − 95018 95814 797 Locate
trnV-GAC gene + 97392 97463 72 Locate
rrn16 gene + 97694 99184 1491 Locate
trnE-UUC gene + 99483 100502 1020 Locate
trnA-UGC gene + 100562 101438 877 Locate
rrn23 gene + 101600 104418 2819 Locate
rrn4.5 gene + 104517 104619 103 Locate
rrn5 gene + 104849 104969 121 Locate
trnR-ACG gene + 105214 105288 75 Locate
trnN-GUU gene − 105846 105919 74 Locate
ycf1 gene + 106260 107414 1155 Locate
ndhF gene − 107305 109545 2241 Locate
rpl32 gene + 110071 110247 177 Locate
trnL-UAG gene + 110638 110717 80 Locate
ccsA gene + 110812 111783 972 Locate
ndhD gene − 112000 113502 1503 Locate
psaC gene − 113622 113867 246 Locate
ndhE gene − 114118 114423 306 Locate
ndhG gene − 114651 115181 531 Locate
ndhI gene − 115535 116041 507 Locate
ndhA gene − 116117 118185 2069 Locate
ndhH gene − 118187 119422 1236 Locate
rps15 gene − 119465 119737 273 Locate
ycf1 gene − 120113 125638 5526 Locate
trnN-GUU gene + 125856 125929 74 Locate
trnR-ACG gene − 126487 126561 75 Locate
rrn5 gene − 126806 126926 121 Locate
rrn4.5 gene − 127156 127258 103 Locate
rrn23 gene − 127357 130175 2819 Locate
trnA-UGC gene − 130337 131212 876 Locate
trnE-UUC gene − 131273 132292 1020 Locate
rrn16 gene − 132591 134081 1491 Locate
trnV-GAC gene − 134312 134383 72 Locate
rps12 gene + 135961 136757 797 Locate
rps7 gene + 136811 137278 468 Locate
ndhB gene + 137554 139766 2213 Locate
trnL-CAA gene + 140314 140396 83 Locate
ycf15 gene − 140663 140860 198 Locate
ycf2 gene − 141002 147748 6747 Locate
trnM-CAU gene + 147837 147911 75 Locate
rpl23 gene + 148076 148357 282 Locate
rpl2 gene + 148376 149864 1489 Locate
rps19 gene + 149917 149976 60 Locate
Status Available
Accession PP024534.1
Length 149,976 bp
GC content 38.3%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources