Ajugoides humilis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR565921.1 · 2–76 bp · −
psbA · OR565921.1 · 307–1,365 bp · −
trnK-UUU · OR565921.1 · 1,598–4,181 bp · −
matK · OR565921.1 · 1,897–3,432 bp · −
rps16 · OR565921.1 · 5,109–6,254 bp · −
trnQ-UUG · OR565921.1 · 7,202–7,273 bp · −
trnS-GCU · OR565921.1 · 8,403–8,490 bp · −
atpA · OR565921.1 · 10,277–11,800 bp · −
atpF · OR565921.1 · 11,888–13,108 bp · −
atpH · OR565921.1 · 13,474–13,719 bp · −
atpI · OR565921.1 · 14,736–15,479 bp · −
rps2 · OR565921.1 · 15,710–16,420 bp · −
rpoC2 · OR565921.1 · 16,642–20,829 bp · −
rpoC1 · OR565921.1 · 20,984–23,814 bp · −
rpoB · OR565921.1 · 23,841–27,053 bp · −
psbM · OR565921.1 · 29,944–30,048 bp · −
trnD-GUC · OR565921.1 · 30,572–30,645 bp · −
trnY-GUA · OR565921.1 · 30,760–30,843 bp · −
trnE-UUC · OR565921.1 · 30,903–30,975 bp · −
trnS-UGA · OR565921.1 · 35,519–35,611 bp · −
trnfM-CAU · OR565921.1 · 36,561–36,634 bp · −
rps14 · OR565921.1 · 36,784–37,086 bp · −
psaB · OR565921.1 · 37,214–39,418 bp · −
psaA · OR565921.1 · 39,444–41,696 bp · −
ycf3 · OR565921.1 · 42,424–44,377 bp · −
rps4 · OR565921.1 · 45,078–45,683 bp · −
trnT-UGU · OR565921.1 · 46,074–46,146 bp · −
ndhJ · OR565921.1 · 48,426–48,920 bp · −
ndhK · OR565921.1 · 49,003–49,680 bp · −
ndhC · OR565921.1 · 49,734–50,096 bp · −
trnV-UAC · OR565921.1 · 51,062–51,714 bp · −
atpE · OR565921.1 · 52,193–52,594 bp · −
atpB · OR565921.1 · 52,591–54,087 bp · −
psbJ · OR565921.1 · 63,740–63,862 bp · −
psbL · OR565921.1 · 64,000–64,116 bp · −
psbF · OR565921.1 · 64,140–64,259 bp · −
psbE · OR565921.1 · 64,274–64,525 bp · −
trnW-CCA · OR565921.1 · 65,966–66,039 bp · −
trnP-UGG · OR565921.1 · 66,209–66,282 bp · −
rpl20 · OR565921.1 · 67,996–68,382 bp · −
rps12 · OR565921.1 · 69,149–69,262 bp · −
rps12 · OR565921.1 · 96,515–97,308 bp · −
clpP · OR565921.1 · 69,389–71,253 bp · −
psbN · OR565921.1 · 73,578–73,709 bp · −
rpoA · OR565921.1 · 77,109–78,122 bp · −
rps11 · OR565921.1 · 78,194–78,625 bp · −
rpl36 · OR565921.1 · 78,713–78,826 bp · −
infA · OR565921.1 · 78,922–79,155 bp · −
rps8 · OR565921.1 · 79,284–79,697 bp · −
rpl14 · OR565921.1 · 79,888–80,256 bp · −
rpl16 · OR565921.1 · 80,383–81,689 bp · −
rps3 · OR565921.1 · 81,836–82,498 bp · −
rpl22 · OR565921.1 · 82,483–82,947 bp · −
rps19 · OR565921.1 · 83,007–83,285 bp · −
rpl2 · OR565921.1 · 83,337–84,828 bp · −
rpl23 · OR565921.1 · 85,023–85,175 bp · −
trnI-CAU · OR565921.1 · 85,294–85,367 bp · −
trnL-CAA · OR565921.1 · 92,892–92,972 bp · −
ndhB · OR565921.1 · 93,508–95,719 bp · −
rps7 · OR565921.1 · 95,994–96,461 bp · −
trnN-GUU · OR565921.1 · 107,409–107,480 bp · −
ndhF · OR565921.1 · 108,870–111,086 bp · −
ndhD · OR565921.1 · 113,810–115,330 bp · −
psaC · OR565921.1 · 115,430–115,675 bp · −
ndhE · OR565921.1 · 115,938–116,243 bp · −
ndhG · OR565921.1 · 116,465–116,995 bp · −
ndhI · OR565921.1 · 117,400–117,906 bp · −
ndhA · OR565921.1 · 117,993–120,151 bp · −
ndhH · OR565921.1 · 120,153–121,334 bp · −
rps15 · OR565921.1 · 121,435–121,770 bp · −
ycf1 · OR565921.1 · 122,088–127,640 bp · −
trnR-ACG · OR565921.1 · 128,605–128,677 bp · −
rrn5 · OR565921.1 · 128,912–129,032 bp · −
rrn4.5 · OR565921.1 · 129,288–129,390 bp · −
rrn23 · OR565921.1 · 129,489–132,298 bp · −
trnA-UGC · OR565921.1 · 132,491–133,369 bp · −
trnI-GAU · OR565921.1 · 133,434–134,442 bp · −
rrn16 · OR565921.1 · 134,732–136,222 bp · −
trnV-GAC · OR565921.1 · 136,450–136,521 bp · −
ycf15 · OR565921.1 · 142,815–143,078 bp · −
ycf2 · OR565921.1 · 143,106–149,990 bp · −
psbK · OR565921.1 · 7,610–7,795 bp · +
psbI · OR565921.1 · 8,170–8,280 bp · +
trnG-UCC · OR565921.1 · 9,182–9,932 bp · +
trnR-UCU · OR565921.1 · 10,106–10,180 bp · +
trnC-GCA · OR565921.1 · 28,155–28,230 bp · +
petN · OR565921.1 · 29,061–29,156 bp · +
trnT-GGU · OR565921.1 · 31,535–31,605 bp · +
psbD · OR565921.1 · 32,856–33,917 bp · +
psbC · OR565921.1 · 33,865–35,286 bp · +
psbZ · OR565921.1 · 35,928–36,116 bp · +
trnG-GCC · OR565921.1 · 36,341–36,411 bp · +
trnS-GGA · OR565921.1 · 44,694–44,780 bp · +
trnL-UAA · OR565921.1 · 46,820–47,393 bp · +
trnF-GAA · OR565921.1 · 47,685–47,757 bp · +
trnM-CAU · OR565921.1 · 51,903–51,975 bp · +
rbcL · OR565921.1 · 54,869–56,323 bp · +
accD · OR565921.1 · 57,009–58,475 bp · +
psaI · OR565921.1 · 59,164–59,274 bp · +
ycf4 · OR565921.1 · 59,710–60,264 bp · +
cemA · OR565921.1 · 60,825–61,514 bp · +
petA · OR565921.1 · 61,731–62,693 bp · +
petL · OR565921.1 · 65,457–65,552 bp · +
petG · OR565921.1 · 65,727–65,840 bp · +
psaJ · OR565921.1 · 66,557–66,691 bp · +
rpl33 · OR565921.1 · 67,164–67,364 bp · +
rps18 · OR565921.1 · 67,511–67,816 bp · +
rps12 · OR565921.1 · 138,138–138,931 bp · +
psbB · OR565921.1 · 71,691–73,217 bp · +
psbT · OR565921.1 · 73,410–73,517 bp · +
psbH · OR565921.1 · 73,813–74,034 bp · +
petB · OR565921.1 · 74,149–75,530 bp · +
petD · OR565921.1 · 75,725–76,946 bp · +
ycf2 · OR565921.1 · 85,456–92,340 bp · +
ycf15 · OR565921.1 · 92,383–92,631 bp · +
trnV-GAC · OR565921.1 · 98,925–98,996 bp · +
rrn16 · OR565921.1 · 99,224–100,714 bp · +
trnI-GAU · OR565921.1 · 101,004–102,012 bp · +
trnA-UGC · OR565921.1 · 102,077–102,955 bp · +
rrn23 · OR565921.1 · 103,148–105,957 bp · +
rrn4.5 · OR565921.1 · 106,056–106,158 bp · +
rrn5 · OR565921.1 · 106,414–106,534 bp · +
trnR-ACG · OR565921.1 · 106,769–106,841 bp · +
rpl32 · OR565921.1 · 111,591–111,767 bp · +
trnL-UAG · OR565921.1 · 112,492–112,571 bp · +
ccsA · OR565921.1 · 112,656–113,627 bp · +
trnN-GUU · OR565921.1 · 127,966–128,037 bp · +
rps7 · OR565921.1 · 138,985–139,452 bp · +
ndhB · OR565921.1 · 139,727–141,938 bp · +
trnL-CAA · OR565921.1 · 142,474–142,554 bp · +
trnI-CAU · OR565921.1 · 150,079–150,152 bp · +
rpl23 · OR565921.1 · 150,271–150,423 bp · +
rpl2 · OR565921.1 · 150,618–152,109 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajugoides humilis
ANNOTATED PLASTOME
OR565921.1
152,202 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38050 76101 114152 152202 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 307 1365 1059 Locate
trnK-UUU gene − 1598 4181 2584 Locate
matK gene − 1897 3432 1536 Locate
rps16 gene − 5109 6254 1146 Locate
trnQ-UUG gene − 7202 7273 72 Locate
psbK gene + 7610 7795 186 Locate
psbI gene + 8170 8280 111 Locate
trnS-GCU gene − 8403 8490 88 Locate
trnG-UCC gene + 9182 9932 751 Locate
trnR-UCU gene + 10106 10180 75 Locate
atpA gene − 10277 11800 1524 Locate
atpF gene − 11888 13108 1221 Locate
atpH gene − 13474 13719 246 Locate
atpI gene − 14736 15479 744 Locate
rps2 gene − 15710 16420 711 Locate
rpoC2 gene − 16642 20829 4188 Locate
rpoC1 gene − 20984 23814 2831 Locate
rpoB gene − 23841 27053 3213 Locate
trnC-GCA gene + 28155 28230 76 Locate
petN gene + 29061 29156 96 Locate
psbM gene − 29944 30048 105 Locate
trnD-GUC gene − 30572 30645 74 Locate
trnY-GUA gene − 30760 30843 84 Locate
trnE-UUC gene − 30903 30975 73 Locate
trnT-GGU gene + 31535 31605 71 Locate
psbD gene + 32856 33917 1062 Locate
psbC gene + 33865 35286 1422 Locate
trnS-UGA gene − 35519 35611 93 Locate
psbZ gene + 35928 36116 189 Locate
trnG-GCC gene + 36341 36411 71 Locate
trnfM-CAU gene − 36561 36634 74 Locate
rps14 gene − 36784 37086 303 Locate
psaB gene − 37214 39418 2205 Locate
psaA gene − 39444 41696 2253 Locate
ycf3 gene − 42424 44377 1954 Locate
trnS-GGA gene + 44694 44780 87 Locate
rps4 gene − 45078 45683 606 Locate
trnT-UGU gene − 46074 46146 73 Locate
trnL-UAA gene + 46820 47393 574 Locate
trnF-GAA gene + 47685 47757 73 Locate
ndhJ gene − 48426 48920 495 Locate
ndhK gene − 49003 49680 678 Locate
ndhC gene − 49734 50096 363 Locate
trnV-UAC gene − 51062 51714 653 Locate
trnM-CAU gene + 51903 51975 73 Locate
atpE gene − 52193 52594 402 Locate
atpB gene − 52591 54087 1497 Locate
rbcL gene + 54869 56323 1455 Locate
accD gene + 57009 58475 1467 Locate
psaI gene + 59164 59274 111 Locate
ycf4 gene + 59710 60264 555 Locate
cemA gene + 60825 61514 690 Locate
petA gene + 61731 62693 963 Locate
psbJ gene − 63740 63862 123 Locate
psbL gene − 64000 64116 117 Locate
psbF gene − 64140 64259 120 Locate
psbE gene − 64274 64525 252 Locate
petL gene + 65457 65552 96 Locate
petG gene + 65727 65840 114 Locate
trnW-CCA gene − 65966 66039 74 Locate
trnP-UGG gene − 66209 66282 74 Locate
psaJ gene + 66557 66691 135 Locate
rpl33 gene + 67164 67364 201 Locate
rps18 gene + 67511 67816 306 Locate
rpl20 gene − 67996 68382 387 Locate
rps12 gene − 69149 69262 114 Locate
clpP gene − 69389 71253 1865 Locate
psbB gene + 71691 73217 1527 Locate
psbT gene + 73410 73517 108 Locate
psbN gene − 73578 73709 132 Locate
psbH gene + 73813 74034 222 Locate
petB gene + 74149 75530 1382 Locate
petD gene + 75725 76946 1222 Locate
rpoA gene − 77109 78122 1014 Locate
rps11 gene − 78194 78625 432 Locate
rpl36 gene − 78713 78826 114 Locate
infA gene − 78922 79155 234 Locate
rps8 gene − 79284 79697 414 Locate
rpl14 gene − 79888 80256 369 Locate
rpl16 gene − 80383 81689 1307 Locate
rps3 gene − 81836 82498 663 Locate
rpl22 gene − 82483 82947 465 Locate
rps19 gene − 83007 83285 279 Locate
rpl2 gene − 83337 84828 1492 Locate
rpl23 gene − 85023 85175 153 Locate
trnI-CAU gene − 85294 85367 74 Locate
ycf2 gene + 85456 92340 6885 Locate
ycf15 gene + 92383 92631 249 Locate
trnL-CAA gene − 92892 92972 81 Locate
ndhB gene − 93508 95719 2212 Locate
rps7 gene − 95994 96461 468 Locate
rps12 gene − 96515 97308 794 Locate
trnV-GAC gene + 98925 98996 72 Locate
rrn16 gene + 99224 100714 1491 Locate
trnI-GAU gene + 101004 102012 1009 Locate
trnA-UGC gene + 102077 102955 879 Locate
rrn23 gene + 103148 105957 2810 Locate
rrn4.5 gene + 106056 106158 103 Locate
rrn5 gene + 106414 106534 121 Locate
trnR-ACG gene + 106769 106841 73 Locate
trnN-GUU gene − 107409 107480 72 Locate
ndhF gene − 108870 111086 2217 Locate
rpl32 gene + 111591 111767 177 Locate
trnL-UAG gene + 112492 112571 80 Locate
ccsA gene + 112656 113627 972 Locate
ndhD gene − 113810 115330 1521 Locate
psaC gene − 115430 115675 246 Locate
ndhE gene − 115938 116243 306 Locate
ndhG gene − 116465 116995 531 Locate
ndhI gene − 117400 117906 507 Locate
ndhA gene − 117993 120151 2159 Locate
ndhH gene − 120153 121334 1182 Locate
rps15 gene − 121435 121770 336 Locate
ycf1 gene − 122088 127640 5553 Locate
trnN-GUU gene + 127966 128037 72 Locate
trnR-ACG gene − 128605 128677 73 Locate
rrn5 gene − 128912 129032 121 Locate
rrn4.5 gene − 129288 129390 103 Locate
rrn23 gene − 129489 132298 2810 Locate
trnA-UGC gene − 132491 133369 879 Locate
trnI-GAU gene − 133434 134442 1009 Locate
rrn16 gene − 134732 136222 1491 Locate
trnV-GAC gene − 136450 136521 72 Locate
rps12 gene + 138138 138931 794 Locate
rps7 gene + 138985 139452 468 Locate
ndhB gene + 139727 141938 2212 Locate
trnL-CAA gene + 142474 142554 81 Locate
ycf15 gene − 142815 143078 264 Locate
ycf2 gene − 143106 149990 6885 Locate
trnI-CAU gene + 150079 150152 74 Locate
rpl23 gene + 150271 150423 153 Locate
rpl2 gene + 150618 152109 1492 Locate
Status Available
Accession OR565921.1
Length 152,202 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources