Ballota nigra subsp. meridionalis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP840338.1 · 4–78 bp · −
psbA · PP840338.1 · 323–1,381 bp · −
trnK-UUU · PP840338.1 · 1,613–4,193 bp · −
matK · PP840338.1 · 1,923–3,443 bp · −
rps16 · PP840338.1 · 4,958–6,097 bp · −
trnQ-UUG · PP840338.1 · 7,073–7,145 bp · −
trnS-GCU · PP840338.1 · 8,279–8,366 bp · −
atpA · PP840338.1 · 10,143–11,666 bp · −
atpF · PP840338.1 · 11,753–12,974 bp · −
atpH · PP840338.1 · 13,332–13,577 bp · −
atpI · PP840338.1 · 14,566–15,309 bp · −
rps2 · PP840338.1 · 15,541–16,251 bp · −
rpoC2 · PP840338.1 · 16,472–20,641 bp · −
rpoC1 · PP840338.1 · 20,799–23,627 bp · −
rpoB · PP840338.1 · 23,654–26,866 bp · −
psbM · PP840338.1 · 29,719–29,823 bp · −
trnD-GUC · PP840338.1 · 30,368–30,444 bp · −
trnY-GUA · PP840338.1 · 30,548–30,633 bp · −
trnE-UUC · PP840338.1 · 30,692–30,764 bp · −
trnS-UGA · PP840338.1 · 35,354–35,446 bp · −
trnM-CAU · PP840338.1 · 36,401–36,475 bp · −
rps14 · PP840338.1 · 36,632–36,934 bp · −
psaB · PP840338.1 · 37,062–39,266 bp · −
psaA · PP840338.1 · 39,292–41,544 bp · −
ycf3 · PP840338.1 · 42,259–44,190 bp · −
rps4 · PP840338.1 · 44,872–45,477 bp · −
trnT-UGU · PP840338.1 · 45,883–45,957 bp · −
ndhJ · PP840338.1 · 48,262–48,738 bp · −
ndhK · PP840338.1 · 48,839–49,516 bp · −
ndhC · PP840338.1 · 49,570–49,932 bp · −
trnV-UAC · PP840338.1 · 50,895–51,559 bp · −
atpE · PP840338.1 · 52,044–52,445 bp · −
atpB · PP840338.1 · 52,442–53,938 bp · −
psbJ · PP840338.1 · 63,623–63,745 bp · −
psbL · PP840338.1 · 63,883–63,999 bp · −
psbF · PP840338.1 · 64,023–64,142 bp · −
psbE · PP840338.1 · 64,157–64,408 bp · −
trnW-CCA · PP840338.1 · 65,846–65,919 bp · −
trnP-UGG · PP840338.1 · 66,081–66,156 bp · −
rpl20 · PP840338.1 · 67,903–68,277 bp · −
rps12 · PP840338.1 · 69,019–69,132 bp · −
rps12 · PP840338.1 · 96,306–97,103 bp · −
clpP1 · PP840338.1 · 69,263–71,133 bp · −
psbN · PP840338.1 · 73,458–73,589 bp · −
rpoA · PP840338.1 · 76,984–77,997 bp · −
rps11 · PP840338.1 · 78,069–78,485 bp · −
rpl36 · PP840338.1 · 78,602–78,715 bp · −
infA · PP840338.1 · 78,812–79,045 bp · −
rps8 · PP840338.1 · 79,163–79,576 bp · −
rpl14 · PP840338.1 · 79,750–80,118 bp · −
rpl16 · PP840338.1 · 80,246–81,541 bp · −
rps3 · PP840338.1 · 81,688–82,350 bp · −
rpl22 · PP840338.1 · 82,335–82,799 bp · −
rps19 · PP840338.1 · 82,858–83,136 bp · −
rpl2 · PP840338.1 · 83,189–84,673 bp · −
rpl23 · PP840338.1 · 84,692–84,973 bp · −
trnM-CAU · PP840338.1 · 85,081–85,155 bp · −
trnL-CAA · PP840338.1 · 92,670–92,752 bp · −
ndhB · PP840338.1 · 93,296–95,507 bp · −
rps7 · PP840338.1 · 95,785–96,252 bp · −
trnN-GUU · PP840338.1 · 107,204–107,277 bp · −
ndhF · PP840338.1 · 108,666–110,888 bp · −
ndhD · PP840338.1 · 113,613–115,007 bp · −
psaC · PP840338.1 · 115,236–115,481 bp · −
ndhE · PP840338.1 · 115,744–116,049 bp · −
ndhG · PP840338.1 · 116,265–116,795 bp · −
ndhI · PP840338.1 · 117,172–117,678 bp · −
ndhA · PP840338.1 · 117,765–119,930 bp · −
ndhH · PP840338.1 · 119,932–121,113 bp · −
rps15 · PP840338.1 · 121,214–121,486 bp · −
ycf1 · PP840338.1 · 121,870–127,425 bp · −
trnR-ACG · PP840338.1 · 128,394–128,468 bp · −
rrn5 · PP840338.1 · 128,703–128,823 bp · −
rrn4.5 · PP840338.1 · 129,079–129,181 bp · −
rrn23 · PP840338.1 · 129,280–132,090 bp · −
trnA-UGC · PP840338.1 · 132,282–133,160 bp · −
trnI-GAU · PP840338.1 · 133,225–134,233 bp · −
rrn16 · PP840338.1 · 134,523–136,013 bp · −
trnV-GAC · PP840338.1 · 136,241–136,312 bp · −
ycf15 · PP840338.1 · 142,617–142,865 bp · −
ycf2 · PP840338.1 · 142,908–149,783 bp · −
psbK · PP840338.1 · 7,482–7,667 bp · +
psbI · PP840338.1 · 8,047–8,157 bp · +
trnR-UCU · PP840338.1 · 9,975–10,046 bp · +
trnC-GCA · PP840338.1 · 27,964–28,034 bp · +
petN · PP840338.1 · 28,867–28,956 bp · +
trnT-GGU · PP840338.1 · 31,364–31,437 bp · +
psbD · PP840338.1 · 32,688–33,749 bp · +
psbC · PP840338.1 · 33,697–35,118 bp · +
psbZ · PP840338.1 · 35,772–35,960 bp · +
trnG-GCC · PP840338.1 · 36,185–36,256 bp · +
trnS-GGA · PP840338.1 · 44,502–44,588 bp · +
trnL-UAA · PP840338.1 · 46,654–47,229 bp · +
trnF-GAA · PP840338.1 · 47,528–47,601 bp · +
trnM-CAU · PP840338.1 · 51,748–51,820 bp · +
rbcL · PP840338.1 · 54,747–56,192 bp · +
accD · PP840338.1 · 56,883–58,340 bp · +
psaI · PP840338.1 · 59,052–59,162 bp · +
ycf4 · PP840338.1 · 59,617–60,171 bp · +
cemA · PP840338.1 · 60,727–61,416 bp · +
petA · PP840338.1 · 61,622–62,584 bp · +
petL · PP840338.1 · 65,333–65,428 bp · +
petG · PP840338.1 · 65,603–65,716 bp · +
psaJ · PP840338.1 · 66,429–66,563 bp · +
rpl33 · PP840338.1 · 67,034–67,234 bp · +
rps18 · PP840338.1 · 67,381–67,686 bp · +
rps12 · PP840338.1 · 137,924–138,721 bp · +
psbB · PP840338.1 · 71,571–73,097 bp · +
psbT · PP840338.1 · 73,290–73,397 bp · +
psbH · PP840338.1 · 73,693–73,914 bp · +
petB · PP840338.1 · 74,039–75,419 bp · +
petD · PP840338.1 · 75,614–76,821 bp · +
ycf2 · PP840338.1 · 85,244–92,119 bp · +
ycf15 · PP840338.1 · 92,162–92,410 bp · +
trnV-GAC · PP840338.1 · 98,715–98,786 bp · +
rrn16 · PP840338.1 · 99,014–100,504 bp · +
trnI-GAU · PP840338.1 · 100,794–101,802 bp · +
trnA-UGC · PP840338.1 · 101,867–102,745 bp · +
rrn23 · PP840338.1 · 102,937–105,747 bp · +
rrn4.5 · PP840338.1 · 105,846–105,948 bp · +
rrn5 · PP840338.1 · 106,204–106,324 bp · +
trnR-ACG · PP840338.1 · 106,559–106,633 bp · +
ycf1 · PP840338.1 · 107,602–108,720 bp · +
rpl32 · PP840338.1 · 111,393–111,569 bp · +
trnL-UAG · PP840338.1 · 112,296–112,375 bp · +
ccsA · PP840338.1 · 112,466–113,437 bp · +
trnN-GUU · PP840338.1 · 127,750–127,823 bp · +
rps7 · PP840338.1 · 138,775–139,242 bp · +
ndhB · PP840338.1 · 139,520–141,731 bp · +
trnL-CAA · PP840338.1 · 142,275–142,357 bp · +
trnM-CAU · PP840338.1 · 149,872–149,946 bp · +
rpl23 · PP840338.1 · 150,054–150,335 bp · +
rpl2 · PP840338.1 · 150,354–151,838 bp · +
rps19 · PP840338.1 · 151,891–151,930 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ballota nigra subsp. meridionalis
ANNOTATED PLASTOME
PP840338.1
151,930 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37982 75965 113948 151930 bp
Forward strand 5′ → 3′
psbK psbI trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 323 1381 1059 Locate
trnK-UUU gene − 1613 4193 2581 Locate
matK gene − 1923 3443 1521 Locate
rps16 gene − 4958 6097 1140 Locate
trnQ-UUG gene − 7073 7145 73 Locate
psbK gene + 7482 7667 186 Locate
psbI gene + 8047 8157 111 Locate
trnS-GCU gene − 8279 8366 88 Locate
trnR-UCU gene + 9975 10046 72 Locate
atpA gene − 10143 11666 1524 Locate
atpF gene − 11753 12974 1222 Locate
atpH gene − 13332 13577 246 Locate
atpI gene − 14566 15309 744 Locate
rps2 gene − 15541 16251 711 Locate
rpoC2 gene − 16472 20641 4170 Locate
rpoC1 gene − 20799 23627 2829 Locate
rpoB gene − 23654 26866 3213 Locate
trnC-GCA gene + 27964 28034 71 Locate
petN gene + 28867 28956 90 Locate
psbM gene − 29719 29823 105 Locate
trnD-GUC gene − 30368 30444 77 Locate
trnY-GUA gene − 30548 30633 86 Locate
trnE-UUC gene − 30692 30764 73 Locate
trnT-GGU gene + 31364 31437 74 Locate
psbD gene + 32688 33749 1062 Locate
psbC gene + 33697 35118 1422 Locate
trnS-UGA gene − 35354 35446 93 Locate
psbZ gene + 35772 35960 189 Locate
trnG-GCC gene + 36185 36256 72 Locate
trnM-CAU gene − 36401 36475 75 Locate
rps14 gene − 36632 36934 303 Locate
psaB gene − 37062 39266 2205 Locate
psaA gene − 39292 41544 2253 Locate
ycf3 gene − 42259 44190 1932 Locate
trnS-GGA gene + 44502 44588 87 Locate
rps4 gene − 44872 45477 606 Locate
trnT-UGU gene − 45883 45957 75 Locate
trnL-UAA gene + 46654 47229 576 Locate
trnF-GAA gene + 47528 47601 74 Locate
ndhJ gene − 48262 48738 477 Locate
ndhK gene − 48839 49516 678 Locate
ndhC gene − 49570 49932 363 Locate
trnV-UAC gene − 50895 51559 665 Locate
trnM-CAU gene + 51748 51820 73 Locate
atpE gene − 52044 52445 402 Locate
atpB gene − 52442 53938 1497 Locate
rbcL gene + 54747 56192 1446 Locate
accD gene + 56883 58340 1458 Locate
psaI gene + 59052 59162 111 Locate
ycf4 gene + 59617 60171 555 Locate
cemA gene + 60727 61416 690 Locate
petA gene + 61622 62584 963 Locate
psbJ gene − 63623 63745 123 Locate
psbL gene − 63883 63999 117 Locate
psbF gene − 64023 64142 120 Locate
psbE gene − 64157 64408 252 Locate
petL gene + 65333 65428 96 Locate
petG gene + 65603 65716 114 Locate
trnW-CCA gene − 65846 65919 74 Locate
trnP-UGG gene − 66081 66156 76 Locate
psaJ gene + 66429 66563 135 Locate
rpl33 gene + 67034 67234 201 Locate
rps18 gene + 67381 67686 306 Locate
rpl20 gene − 67903 68277 375 Locate
rps12 gene − 69019 69132 114 Locate
clpP1 gene − 69263 71133 1871 Locate
psbB gene + 71571 73097 1527 Locate
psbT gene + 73290 73397 108 Locate
psbN gene − 73458 73589 132 Locate
psbH gene + 73693 73914 222 Locate
petB gene + 74039 75419 1381 Locate
petD gene + 75614 76821 1208 Locate
rpoA gene − 76984 77997 1014 Locate
rps11 gene − 78069 78485 417 Locate
rpl36 gene − 78602 78715 114 Locate
infA gene − 78812 79045 234 Locate
rps8 gene − 79163 79576 414 Locate
rpl14 gene − 79750 80118 369 Locate
rpl16 gene − 80246 81541 1296 Locate
rps3 gene − 81688 82350 663 Locate
rpl22 gene − 82335 82799 465 Locate
rps19 gene − 82858 83136 279 Locate
rpl2 gene − 83189 84673 1485 Locate
rpl23 gene − 84692 84973 282 Locate
trnM-CAU gene − 85081 85155 75 Locate
ycf2 gene + 85244 92119 6876 Locate
ycf15 gene + 92162 92410 249 Locate
trnL-CAA gene − 92670 92752 83 Locate
ndhB gene − 93296 95507 2212 Locate
rps7 gene − 95785 96252 468 Locate
rps12 gene − 96306 97103 798 Locate
trnV-GAC gene + 98715 98786 72 Locate
rrn16 gene + 99014 100504 1491 Locate
trnI-GAU gene + 100794 101802 1009 Locate
trnA-UGC gene + 101867 102745 879 Locate
rrn23 gene + 102937 105747 2811 Locate
rrn4.5 gene + 105846 105948 103 Locate
rrn5 gene + 106204 106324 121 Locate
trnR-ACG gene + 106559 106633 75 Locate
trnN-GUU gene − 107204 107277 74 Locate
ycf1 gene + 107602 108720 1119 Locate
ndhF gene − 108666 110888 2223 Locate
rpl32 gene + 111393 111569 177 Locate
trnL-UAG gene + 112296 112375 80 Locate
ccsA gene + 112466 113437 972 Locate
ndhD gene − 113613 115007 1395 Locate
psaC gene − 115236 115481 246 Locate
ndhE gene − 115744 116049 306 Locate
ndhG gene − 116265 116795 531 Locate
ndhI gene − 117172 117678 507 Locate
ndhA gene − 117765 119930 2166 Locate
ndhH gene − 119932 121113 1182 Locate
rps15 gene − 121214 121486 273 Locate
ycf1 gene − 121870 127425 5556 Locate
trnN-GUU gene + 127750 127823 74 Locate
trnR-ACG gene − 128394 128468 75 Locate
rrn5 gene − 128703 128823 121 Locate
rrn4.5 gene − 129079 129181 103 Locate
rrn23 gene − 129280 132090 2811 Locate
trnA-UGC gene − 132282 133160 879 Locate
trnI-GAU gene − 133225 134233 1009 Locate
rrn16 gene − 134523 136013 1491 Locate
trnV-GAC gene − 136241 136312 72 Locate
rps12 gene + 137924 138721 798 Locate
rps7 gene + 138775 139242 468 Locate
ndhB gene + 139520 141731 2212 Locate
trnL-CAA gene + 142275 142357 83 Locate
ycf15 gene − 142617 142865 249 Locate
ycf2 gene − 142908 149783 6876 Locate
trnM-CAU gene + 149872 149946 75 Locate
rpl23 gene + 150054 150335 282 Locate
rpl2 gene + 150354 151838 1485 Locate
rps19 gene + 151891 151930 40 Locate
Status Available
Accession PP840338.1
Length 151,930 bp
GC content 38.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources