Callicarpa bodinieri chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_054294.1 · 1–74 bp · −
psbA · NC_054294.1 · 431–1,489 bp · −
trnK-UUU · NC_054294.1 · 1,743–4,314 bp · −
matK · NC_054294.1 · 2,049–3,572 bp · −
rps16 · NC_054294.1 · 5,177–6,310 bp · −
trnQ-UUG · NC_054294.1 · 7,467–7,538 bp · −
trnS-GCU · NC_054294.1 · 8,676–8,763 bp · −
atpA · NC_054294.1 · 10,604–12,127 bp · −
atpF · NC_054294.1 · 12,195–13,441 bp · −
atpH · NC_054294.1 · 13,812–14,057 bp · −
atpI · NC_054294.1 · 15,066–15,809 bp · −
rps2 · NC_054294.1 · 16,040–16,750 bp · −
rpoC2 · NC_054294.1 · 16,967–21,148 bp · −
rpoC1 · NC_054294.1 · 21,303–24,128 bp · −
rpoB · NC_054294.1 · 24,155–27,367 bp · −
psbM · NC_054294.1 · 30,457–30,561 bp · −
trnD-GUC · NC_054294.1 · 31,083–31,156 bp · −
trnY-GUA · NC_054294.1 · 31,265–31,348 bp · −
trnE-UUC · NC_054294.1 · 31,408–31,480 bp · −
trnS-UGA · NC_054294.1 · 36,160–36,252 bp · −
trnfM-CAU · NC_054294.1 · 37,268–37,341 bp · −
rps14 · NC_054294.1 · 37,491–37,793 bp · −
psaB · NC_054294.1 · 37,916–40,120 bp · −
psaA · NC_054294.1 · 40,146–42,398 bp · −
ycf3 · NC_054294.1 · 43,107–45,061 bp · −
rps4 · NC_054294.1 · 46,264–46,869 bp · −
trnT-UGU · NC_054294.1 · 47,236–47,308 bp · −
ndhJ · NC_054294.1 · 49,623–50,099 bp · −
ndhK · NC_054294.1 · 50,200–50,961 bp · −
ndhC · NC_054294.1 · 50,931–51,293 bp · −
trnV-UAC · NC_054294.1 · 52,482–53,134 bp · −
atpE · NC_054294.1 · 53,596–53,997 bp · −
atpB · NC_054294.1 · 53,994–55,490 bp · −
psbJ · NC_054294.1 · 65,098–65,220 bp · −
psbL · NC_054294.1 · 65,354–65,575 bp · −
psbF · NC_054294.1 · 65,494–65,613 bp · −
psbE · NC_054294.1 · 65,628–65,879 bp · −
trnW-CCA · NC_054294.1 · 67,317–67,390 bp · −
trnP-UGG · NC_054294.1 · 67,552–67,625 bp · −
rpl20 · NC_054294.1 · 69,542–69,928 bp · −
rps12 · NC_054294.1 · 70,755–70,868 bp · −
rps12 · NC_054294.1 · 98,264–99,057 bp · −
clpP · NC_054294.1 · 71,026–72,974 bp · −
psbN · NC_054294.1 · 75,316–75,447 bp · −
rpoA · NC_054294.1 · 78,868–79,881 bp · −
rps11 · NC_054294.1 · 79,953–80,369 bp · −
rpl36 · NC_054294.1 · 80,471–80,584 bp · −
infA · NC_054294.1 · 80,680–80,913 bp · −
rps8 · NC_054294.1 · 81,038–81,442 bp · −
rpl14 · NC_054294.1 · 81,614–81,982 bp · −
rpl16 · NC_054294.1 · 82,109–83,403 bp · −
rps3 · NC_054294.1 · 83,546–84,208 bp · −
rpl22 · NC_054294.1 · 84,218–84,655 bp · −
rps19 · NC_054294.1 · 84,715–84,987 bp · −
rpl23 · NC_054294.1 · 86,559–86,840 bp · −
trnI-CAU · NC_054294.1 · 87,006–87,079 bp · −
trnL-CAA · NC_054294.1 · 94,629–94,709 bp · −
ndhB · NC_054294.1 · 95,257–97,468 bp · −
rps7 · NC_054294.1 · 97,743–98,210 bp · −
trnN-GUU · NC_054294.1 · 109,183–109,254 bp · −
ndhF · NC_054294.1 · 110,659–112,902 bp · −
ndhD · NC_054294.1 · 115,781–117,283 bp · −
psaC · NC_054294.1 · 117,404–117,649 bp · −
ndhE · NC_054294.1 · 117,900–118,202 bp · −
ndhG · NC_054294.1 · 118,419–118,949 bp · −
ndhI · NC_054294.1 · 119,298–119,804 bp · −
ndhA · NC_054294.1 · 119,880–122,064 bp · −
ndhH · NC_054294.1 · 122,066–123,301 bp · −
rps15 · NC_054294.1 · 123,344–123,679 bp · −
ycf1 · NC_054294.1 · 123,998–129,661 bp · −
trnR-ACG · NC_054294.1 · 130,521–130,594 bp · −
rrn5 · NC_054294.1 · 130,838–130,958 bp · −
rrn4.5 · NC_054294.1 · 131,214–131,316 bp · −
rrn23 · NC_054294.1 · 131,416–134,224 bp · −
trnA-UGC · NC_054294.1 · 134,393–135,278 bp · −
trnI-GAU · NC_054294.1 · 135,343–136,363 bp · −
rrn16 · NC_054294.1 · 136,662–138,152 bp · −
trnV-GAC · NC_054294.1 · 138,398–138,469 bp · −
ycf2 · NC_054294.1 · 145,096–151,956 bp · −
psbK · NC_054294.1 · 7,872–8,057 bp · +
psbI · NC_054294.1 · 8,448–8,558 bp · +
trnG-UCC · NC_054294.1 · 9,491–10,250 bp · +
trnR-UCU · NC_054294.1 · 10,428–10,499 bp · +
trnC-GCA · NC_054294.1 · 28,543–28,613 bp · +
petN · NC_054294.1 · 29,445–29,534 bp · +
trnT-GGU · NC_054294.1 · 32,037–32,108 bp · +
psbD · NC_054294.1 · 33,488–34,549 bp · +
psbC · NC_054294.1 · 34,497–35,918 bp · +
psbZ · NC_054294.1 · 36,582–36,770 bp · +
trnG-GCC · NC_054294.1 · 37,046–37,116 bp · +
trnS-GGA · NC_054294.1 · 45,897–45,983 bp · +
trnL-UAA · NC_054294.1 · 47,983–48,555 bp · +
trnF-GAA · NC_054294.1 · 48,901–48,973 bp · +
trnM-CAU · NC_054294.1 · 53,316–53,388 bp · +
rbcL · NC_054294.1 · 56,255–57,715 bp · +
accD · NC_054294.1 · 58,331–59,875 bp · +
psaI · NC_054294.1 · 60,578–60,688 bp · +
ycf4 · NC_054294.1 · 61,128–61,682 bp · +
cemA · NC_054294.1 · 62,330–63,019 bp · +
petA · NC_054294.1 · 63,209–64,171 bp · +
petL · NC_054294.1 · 66,811–66,906 bp · +
petG · NC_054294.1 · 67,081–67,194 bp · +
psaJ · NC_054294.1 · 68,017–68,151 bp · +
rpl33 · NC_054294.1 · 68,631–68,831 bp · +
rps18 · NC_054294.1 · 69,002–69,307 bp · +
rps12 · NC_054294.1 · 140,077–140,870 bp · +
psbB · NC_054294.1 · 73,429–74,955 bp · +
psbT · NC_054294.1 · 75,148–75,255 bp · +
psbH · NC_054294.1 · 75,553–75,774 bp · +
petB · NC_054294.1 · 75,899–77,278 bp · +
petD · NC_054294.1 · 77,467–78,691 bp · +
ycf2 · NC_054294.1 · 87,178–94,038 bp · +
trnV-GAC · NC_054294.1 · 100,665–100,736 bp · +
rrn16 · NC_054294.1 · 100,982–102,472 bp · +
trnI-GAU · NC_054294.1 · 102,771–103,791 bp · +
trnA-UGC · NC_054294.1 · 103,856–104,741 bp · +
rrn23 · NC_054294.1 · 104,910–107,718 bp · +
rrn4.5 · NC_054294.1 · 107,818–107,920 bp · +
rrn5 · NC_054294.1 · 108,176–108,296 bp · +
trnR-ACG · NC_054294.1 · 108,540–108,613 bp · +
rpl32 · NC_054294.1 · 113,421–113,597 bp · +
trnL-UAG · NC_054294.1 · 114,379–114,458 bp · +
ccsA · NC_054294.1 · 114,543–115,514 bp · +
trnN-GUU · NC_054294.1 · 129,880–129,951 bp · +
rps7 · NC_054294.1 · 140,924–141,391 bp · +
ndhB · NC_054294.1 · 141,666–143,877 bp · +
trnL-CAA · NC_054294.1 · 144,425–144,505 bp · +
trnI-CAU · NC_054294.1 · 152,055–152,128 bp · +
rpl23 · NC_054294.1 · 152,294–152,575 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa bodinieri
ANNOTATED PLASTOME
NC_054294.1
154,183 bp · 128 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38546 77092 115637 154183 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
129 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 74 74 Locate
psbA gene − 431 1489 1059 Locate
trnK-UUU gene − 1743 4314 2572 Locate
matK gene − 2049 3572 1524 Locate
rps16 gene − 5177 6310 1134 Locate
trnQ-UUG gene − 7467 7538 72 Locate
psbK gene + 7872 8057 186 Locate
psbI gene + 8448 8558 111 Locate
trnS-GCU gene − 8676 8763 88 Locate
trnG-UCC gene + 9491 10250 760 Locate
trnR-UCU gene + 10428 10499 72 Locate
atpA gene − 10604 12127 1524 Locate
atpF gene − 12195 13441 1247 Locate
atpH gene − 13812 14057 246 Locate
atpI gene − 15066 15809 744 Locate
rps2 gene − 16040 16750 711 Locate
rpoC2 gene − 16967 21148 4182 Locate
rpoC1 gene − 21303 24128 2826 Locate
rpoB gene − 24155 27367 3213 Locate
trnC-GCA gene + 28543 28613 71 Locate
petN gene + 29445 29534 90 Locate
psbM gene − 30457 30561 105 Locate
trnD-GUC gene − 31083 31156 74 Locate
trnY-GUA gene − 31265 31348 84 Locate
trnE-UUC gene − 31408 31480 73 Locate
trnT-GGU gene + 32037 32108 72 Locate
psbD gene + 33488 34549 1062 Locate
psbC gene + 34497 35918 1422 Locate
trnS-UGA gene − 36160 36252 93 Locate
psbZ gene + 36582 36770 189 Locate
trnG-GCC gene + 37046 37116 71 Locate
trnfM-CAU gene − 37268 37341 74 Locate
rps14 gene − 37491 37793 303 Locate
psaB gene − 37916 40120 2205 Locate
psaA gene − 40146 42398 2253 Locate
ycf3 gene − 43107 45061 1955 Locate
trnS-GGA gene + 45897 45983 87 Locate
rps4 gene − 46264 46869 606 Locate
trnT-UGU gene − 47236 47308 73 Locate
trnL-UAA gene + 47983 48555 573 Locate
trnF-GAA gene + 48901 48973 73 Locate
ndhJ gene − 49623 50099 477 Locate
ndhK gene − 50200 50961 762 Locate
ndhC gene − 50931 51293 363 Locate
trnV-UAC gene − 52482 53134 653 Locate
trnM-CAU gene + 53316 53388 73 Locate
atpE gene − 53596 53997 402 Locate
atpB gene − 53994 55490 1497 Locate
rbcL gene + 56255 57715 1461 Locate
accD gene + 58331 59875 1545 Locate
psaI gene + 60578 60688 111 Locate
ycf4 gene + 61128 61682 555 Locate
cemA gene + 62330 63019 690 Locate
petA gene + 63209 64171 963 Locate
psbJ gene − 65098 65220 123 Locate
psbL gene − 65354 65575 222 Locate
psbF gene − 65494 65613 120 Locate
psbE gene − 65628 65879 252 Locate
petL gene + 66811 66906 96 Locate
petG gene + 67081 67194 114 Locate
trnW-CCA gene − 67317 67390 74 Locate
trnP-UGG gene − 67552 67625 74 Locate
psaJ gene + 68017 68151 135 Locate
rpl33 gene + 68631 68831 201 Locate
rps18 gene + 69002 69307 306 Locate
rpl20 gene − 69542 69928 387 Locate
rps12 gene − 70755 70868 114 Locate
clpP gene − 71026 72974 1949 Locate
psbB gene + 73429 74955 1527 Locate
psbT gene + 75148 75255 108 Locate
psbN gene − 75316 75447 132 Locate
psbH gene + 75553 75774 222 Locate
petB gene + 75899 77278 1380 Locate
petD gene + 77467 78691 1225 Locate
rpoA gene − 78868 79881 1014 Locate
rps11 gene − 79953 80369 417 Locate
rpl36 gene − 80471 80584 114 Locate
infA gene − 80680 80913 234 Locate
rps8 gene − 81038 81442 405 Locate
rpl14 gene − 81614 81982 369 Locate
rpl16 gene − 82109 83403 1295 Locate
rps3 gene − 83546 84208 663 Locate
rpl22 gene − 84218 84655 438 Locate
rps19 gene − 84715 84987 273 Locate
rpl23 gene − 86559 86840 282 Locate
trnI-CAU gene − 87006 87079 74 Locate
ycf2 gene + 87178 94038 6861 Locate
trnL-CAA gene − 94629 94709 81 Locate
ndhB gene − 95257 97468 2212 Locate
rps7 gene − 97743 98210 468 Locate
rps12 gene − 98264 99057 794 Locate
trnV-GAC gene + 100665 100736 72 Locate
rrn16 gene + 100982 102472 1491 Locate
trnI-GAU gene + 102771 103791 1021 Locate
trnA-UGC gene + 103856 104741 886 Locate
rrn23 gene + 104910 107718 2809 Locate
rrn4.5 gene + 107818 107920 103 Locate
rrn5 gene + 108176 108296 121 Locate
trnR-ACG gene + 108540 108613 74 Locate
trnN-GUU gene − 109183 109254 72 Locate
ndhF gene − 110659 112902 2244 Locate
rpl32 gene + 113421 113597 177 Locate
trnL-UAG gene + 114379 114458 80 Locate
ccsA gene + 114543 115514 972 Locate
ndhD gene − 115781 117283 1503 Locate
psaC gene − 117404 117649 246 Locate
ndhE gene − 117900 118202 303 Locate
ndhG gene − 118419 118949 531 Locate
ndhI gene − 119298 119804 507 Locate
ndhA gene − 119880 122064 2185 Locate
ndhH gene − 122066 123301 1236 Locate
rps15 gene − 123344 123679 336 Locate
ycf1 gene − 123998 129661 5664 Locate
trnN-GUU gene + 129880 129951 72 Locate
trnR-ACG gene − 130521 130594 74 Locate
rrn5 gene − 130838 130958 121 Locate
rrn4.5 gene − 131214 131316 103 Locate
rrn23 gene − 131416 134224 2809 Locate
trnA-UGC gene − 134393 135278 886 Locate
trnI-GAU gene − 135343 136363 1021 Locate
rrn16 gene − 136662 138152 1491 Locate
trnV-GAC gene − 138398 138469 72 Locate
rps12 gene + 140077 140870 794 Locate
rps7 gene + 140924 141391 468 Locate
ndhB gene + 141666 143877 2212 Locate
trnL-CAA gene + 144425 144505 81 Locate
ycf2 gene − 145096 151956 6861 Locate
trnI-CAU gene + 152055 152128 74 Locate
rpl23 gene + 152294 152575 282 Locate
Status Available
Accession NC_054294.1
Length 154,183 bp
GC content 38.1%
Annotated genes 128
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 24 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources