Callicarpa brevipes chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
trnH-GUG · NC_058322.1 · 4–78 bp · −
psbA · NC_058322.1 · 434–1,492 bp · −
trnK-UUU · NC_058322.1 · 1,746–4,317 bp · −
matK · NC_058322.1 · 2,040–3,575 bp · −
matK · NC_058322.1 · 2,052–3,575 bp · −
rps16 · NC_058322.1 · 5,182–6,315 bp · −
trnQ-UUG · NC_058322.1 · 7,464–7,535 bp · −
trnS-GCU · NC_058322.1 · 8,673–8,760 bp · −
atpA · NC_058322.1 · 10,581–12,104 bp · −
atpF · NC_058322.1 · 12,172–13,418 bp · −
atpH · NC_058322.1 · 13,787–14,032 bp · −
atpI · NC_058322.1 · 15,048–15,791 bp · −
rps2 · NC_058322.1 · 16,022–16,732 bp · −
rpoC · NC_058322.1 · 16,949–21,130 bp · −
rpoC1 · NC_058322.1 · 21,285–24,115 bp · −
rpoB · NC_058322.1 · 24,142–27,330 bp · −
psbM · NC_058322.1 · 30,431–30,535 bp · −
trnD-GUC · NC_058322.1 · 31,071–31,144 bp · −
trnY-GUA · NC_058322.1 · 31,253–31,336 bp · −
trnE-UUC · NC_058322.1 · 31,396–31,468 bp · −
trnS-UGA · NC_058322.1 · 36,148–36,240 bp · −
trnfM-CAU · NC_058322.1 · 37,256–37,329 bp · −
rps14 · NC_058322.1 · 37,479–37,781 bp · −
psaB · NC_058322.1 · 37,904–40,108 bp · −
psaA · NC_058322.1 · 40,134–42,386 bp · −
ycf3 · NC_058322.1 · 43,101–45,055 bp · −
rps4 · NC_058322.1 · 46,257–46,862 bp · −
trnT-UGU · NC_058322.1 · 47,230–47,302 bp · −
ndhJ · NC_058322.1 · 49,610–50,086 bp · −
ndhK · NC_058322.1 · 50,187–50,864 bp · −
ndhC · NC_058322.1 · 50,918–51,280 bp · −
trnV-UAC · NC_058322.1 · 52,470–53,122 bp · −
atpE · NC_058322.1 · 53,584–53,985 bp · −
atpB · NC_058322.1 · 53,982–55,484 bp · −
psbJ · NC_058322.1 · 65,112–65,234 bp · −
psbL · NC_058322.1 · 65,368–65,484 bp · −
psbF · NC_058322.1 · 65,508–65,627 bp · −
psbE · NC_058322.1 · 65,642–65,893 bp · −
trnW-CCA · NC_058322.1 · 67,335–67,408 bp · −
trnP-UGG · NC_058322.1 · 67,571–67,644 bp · −
rpl20 · NC_058322.1 · 69,562–69,948 bp · −
rps12 · NC_058322.1 · 70,770–70,883 bp · −
rps12 · NC_058322.1 · 98,251–99,044 bp · −
clpP · NC_058322.1 · 71,017–72,965 bp · −
psbN · NC_058322.1 · 75,314–75,445 bp · −
rpoA · NC_058322.1 · 78,855–79,868 bp · −
rps11 · NC_058322.1 · 79,940–80,356 bp · −
rpl36 · NC_058322.1 · 80,458–80,571 bp · −
infA · NC_058322.1 · 80,667–80,900 bp · −
rps8 · NC_058322.1 · 81,025–81,429 bp · −
rpl14 · NC_058322.1 · 81,601–81,969 bp · −
rpl16 · NC_058322.1 · 82,096–83,390 bp · −
rps3 · NC_058322.1 · 83,533–84,195 bp · −
rpl22 · NC_058322.1 · 84,205–84,642 bp · −
rps19 · NC_058322.1 · 84,702–84,980 bp · −
rpl2 · NC_058322.1 · 85,036–86,527 bp · −
rpl23 · NC_058322.1 · 86,546–86,827 bp · −
trnI-CAU · NC_058322.1 · 86,993–87,066 bp · −
trnL-CAA · NC_058322.1 · 94,616–94,696 bp · −
ndhB · NC_058322.1 · 96,679–97,455 bp · −
ndhB · NC_058322.1 · 95,244–95,999 bp · −
ndhB · NC_058322.1 · 95,244–97,456 bp · −
rps7 · NC_058322.1 · 97,730–98,197 bp · −
trnN-GUU · NC_058322.1 · 109,171–109,242 bp · −
ndhF · NC_058322.1 · 110,647–112,890 bp · −
ndhD · NC_058322.1 · 115,769–117,304 bp · −
psaC · NC_058322.1 · 117,393–117,638 bp · −
ndhE · NC_058322.1 · 117,889–118,194 bp · −
ndhG · NC_058322.1 · 118,408–118,938 bp · −
ndhI · NC_058322.1 · 119,287–119,793 bp · −
ndhA · NC_058322.1 · 119,869–122,053 bp · −
ndhH · NC_058322.1 · 122,055–123,236 bp · −
rps15 · NC_058322.1 · 123,333–123,605 bp · −
ycf1 · NC_058322.1 · 123,987–129,662 bp · −
trnR-ACG · NC_058322.1 · 130,522–130,595 bp · −
rrn5 · NC_058322.1 · 130,839–130,959 bp · −
rrn4.5 · NC_058322.1 · 131,215–131,317 bp · −
rrn23 · NC_058322.1 · 131,415–134,225 bp · −
trnA-UGC · NC_058322.1 · 134,394–135,281 bp · −
trnI-GAU · NC_058322.1 · 135,346–136,366 bp · −
rrn16 · NC_058322.1 · 136,665–138,155 bp · −
trnV-GAC · NC_058322.1 · 138,401–138,472 bp · −
ycf15 · NC_058322.1 · 144,768–145,016 bp · −
ycf2 · NC_058322.1 · 145,098–151,958 bp · −
psbK · NC_058322.1 · 7,860–8,054 bp · +
psbI · NC_058322.1 · 8,445–8,555 bp · +
trnG-UCC · NC_058322.1 · 9,468–10,228 bp · +
trnR-UCU · NC_058322.1 · 10,405–10,476 bp · +
trnC-GCA · NC_058322.1 · 28,530–28,600 bp · +
petN · NC_058322.1 · 29,432–29,521 bp · +
trnT-GGU · NC_058322.1 · 32,025–32,096 bp · +
psbD · NC_058322.1 · 33,476–34,537 bp · +
psbC · NC_058322.1 · 34,485–35,906 bp · +
psbZ · NC_058322.1 · 36,570–36,758 bp · +
trnG-GCC · NC_058322.1 · 37,034–37,104 bp · +
trnS-GGA · NC_058322.1 · 45,890–45,976 bp · +
trnL-UAA · NC_058322.1 · 47,975–48,552 bp · +
trnF-GAA · NC_058322.1 · 48,889–48,971 bp · +
trnM-CAU · NC_058322.1 · 53,304–53,376 bp · +
rbcL · NC_058322.1 · 56,264–57,703 bp · +
accD · NC_058322.1 · 58,338–59,882 bp · +
psaI · NC_058322.1 · 60,584–60,694 bp · +
ycf4 · NC_058322.1 · 61,133–61,687 bp · +
cemA · NC_058322.1 · 62,335–63,024 bp · +
petA · NC_058322.1 · 63,214–64,176 bp · +
petL · NC_058322.1 · 66,823–66,918 bp · +
petG · NC_058322.1 · 67,093–67,206 bp · +
psaJ · NC_058322.1 · 68,036–68,170 bp · +
rpl33 · NC_058322.1 · 68,650–68,850 bp · +
rps18 · NC_058322.1 · 69,021–69,326 bp · +
rps12 · NC_058322.1 · 140,079–140,872 bp · +
psbB · NC_058322.1 · 73,427–74,953 bp · +
psbT · NC_058322.1 · 75,146–75,253 bp · +
psbH · NC_058322.1 · 75,533–75,772 bp · +
petB · NC_058322.1 · 75,897–77,273 bp · +
petD · NC_058322.1 · 77,462–78,678 bp · +
ycf2 · NC_058322.1 · 87,165–94,025 bp · +
ycf15 · NC_058322.1 · 94,107–94,355 bp · +
trnV-GAC · NC_058322.1 · 100,651–100,722 bp · +
rrn16 · NC_058322.1 · 100,968–102,458 bp · +
trnI-GAU · NC_058322.1 · 102,757–103,777 bp · +
trnA-UGC · NC_058322.1 · 103,842–104,729 bp · +
rrn23 · NC_058322.1 · 104,898–107,708 bp · +
rrn4.5 · NC_058322.1 · 107,806–107,908 bp · +
rrn5 · NC_058322.1 · 108,164–108,284 bp · +
trnR-ACG · NC_058322.1 · 108,528–108,601 bp · +
ycf1 · NC_058322.1 · 109,572–110,657 bp · +
rpl32 · NC_058322.1 · 113,409–113,585 bp · +
trnL-UAG; trnL-CAA · NC_058322.1 · 114,367–114,446 bp · +
ccsA · NC_058322.1 · 114,531–115,502 bp · +
trnN-GUU · NC_058322.1 · 129,881–129,952 bp · +
rps7 · NC_058322.1 · 140,926–141,393 bp · +
ndhB · NC_058322.1 · 141,668–143,879 bp · +
trnL-CAA · NC_058322.1 · 144,427–144,507 bp · +
trnI-CAU · NC_058322.1 · 152,057–152,130 bp · +
rpl23 · NC_058322.1 · 152,296–152,577 bp · +
rpl2 · NC_058322.1 · 152,596–154,087 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa brevipes
ANNOTATED PLASTOME
NC_058322.1
154,182 bp · 135 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38546 77091 115636 154182 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG; trnL-CAA ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB ndhB ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
137 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 434 1492 1059 Locate
trnK-UUU gene − 1746 4317 2572 Locate
matK gene − 2040 3575 1536 Locate
matK CDS − 2052 3575 1524 Locate
rps16 gene − 5182 6315 1134 Locate
trnQ-UUG gene − 7464 7535 72 Locate
psbK gene + 7860 8054 195 Locate
psbI gene + 8445 8555 111 Locate
trnS-GCU gene − 8673 8760 88 Locate
trnG-UCC gene + 9468 10228 761 Locate
trnR-UCU gene + 10405 10476 72 Locate
atpA gene − 10581 12104 1524 Locate
atpF gene − 12172 13418 1247 Locate
atpH gene − 13787 14032 246 Locate
atpI gene − 15048 15791 744 Locate
rps2 gene − 16022 16732 711 Locate
rpoC gene − 16949 21130 4182 Locate
rpoC1 gene − 21285 24115 2831 Locate
rpoB gene − 24142 27330 3189 Locate
trnC-GCA gene + 28530 28600 71 Locate
petN gene + 29432 29521 90 Locate
psbM gene − 30431 30535 105 Locate
trnD-GUC gene − 31071 31144 74 Locate
trnY-GUA gene − 31253 31336 84 Locate
trnE-UUC gene − 31396 31468 73 Locate
trnT-GGU gene + 32025 32096 72 Locate
psbD gene + 33476 34537 1062 Locate
psbC gene + 34485 35906 1422 Locate
trnS-UGA gene − 36148 36240 93 Locate
psbZ gene + 36570 36758 189 Locate
trnG-GCC gene + 37034 37104 71 Locate
trnfM-CAU gene − 37256 37329 74 Locate
rps14 gene − 37479 37781 303 Locate
psaB gene − 37904 40108 2205 Locate
psaA gene − 40134 42386 2253 Locate
ycf3 gene − 43101 45055 1955 Locate
trnS-GGA gene + 45890 45976 87 Locate
rps4 gene − 46257 46862 606 Locate
trnT-UGU gene − 47230 47302 73 Locate
trnL-UAA gene + 47975 48552 578 Locate
trnF-GAA gene + 48889 48971 83 Locate
ndhJ gene − 49610 50086 477 Locate
ndhK gene − 50187 50864 678 Locate
ndhC gene − 50918 51280 363 Locate
trnV-UAC gene − 52470 53122 653 Locate
trnM-CAU gene + 53304 53376 73 Locate
atpE gene − 53584 53985 402 Locate
atpB gene − 53982 55484 1503 Locate
rbcL gene + 56264 57703 1440 Locate
accD gene + 58338 59882 1545 Locate
psaI gene + 60584 60694 111 Locate
ycf4 gene + 61133 61687 555 Locate
cemA gene + 62335 63024 690 Locate
petA gene + 63214 64176 963 Locate
psbJ gene − 65112 65234 123 Locate
psbL gene − 65368 65484 117 Locate
psbF gene − 65508 65627 120 Locate
psbE gene − 65642 65893 252 Locate
petL gene + 66823 66918 96 Locate
petG gene + 67093 67206 114 Locate
trnW-CCA gene − 67335 67408 74 Locate
trnP-UGG gene − 67571 67644 74 Locate
psaJ gene + 68036 68170 135 Locate
rpl33 gene + 68650 68850 201 Locate
rps18 gene + 69021 69326 306 Locate
rpl20 gene − 69562 69948 387 Locate
rps12 gene − 70770 70883 114 Locate
clpP gene − 71017 72965 1949 Locate
psbB gene + 73427 74953 1527 Locate
psbT gene + 75146 75253 108 Locate
psbN gene − 75314 75445 132 Locate
psbH gene + 75533 75772 240 Locate
petB gene + 75897 77273 1377 Locate
petD gene + 77462 78678 1217 Locate
rpoA gene − 78855 79868 1014 Locate
rps11 gene − 79940 80356 417 Locate
rpl36 gene − 80458 80571 114 Locate
infA gene − 80667 80900 234 Locate
rps8 gene − 81025 81429 405 Locate
rpl14 gene − 81601 81969 369 Locate
rpl16 gene − 82096 83390 1295 Locate
rps3 gene − 83533 84195 663 Locate
rpl22 gene − 84205 84642 438 Locate
rps19 gene − 84702 84980 279 Locate
rpl2 gene − 85036 86527 1492 Locate
rpl23 gene − 86546 86827 282 Locate
trnI-CAU gene − 86993 87066 74 Locate
ycf2 gene + 87165 94025 6861 Locate
ycf15 gene + 94107 94355 249 Locate
trnL-CAA gene − 94616 94696 81 Locate
ndhB CDS − 95244 95999 756 Locate
ndhB gene − 95244 97456 2213 Locate
ndhB CDS − 96679 97455 777 Locate
rps7 gene − 97730 98197 468 Locate
rps12 gene − 98251 99044 794 Locate
trnV-GAC gene + 100651 100722 72 Locate
rrn16 gene + 100968 102458 1491 Locate
trnI-GAU gene + 102757 103777 1021 Locate
trnA-UGC gene + 103842 104729 888 Locate
rrn23 gene + 104898 107708 2811 Locate
rrn4.5 gene + 107806 107908 103 Locate
rrn5 gene + 108164 108284 121 Locate
trnR-ACG gene + 108528 108601 74 Locate
trnN-GUU gene − 109171 109242 72 Locate
ycf1 gene + 109572 110657 1086 Locate
ndhF gene − 110647 112890 2244 Locate
rpl32 gene + 113409 113585 177 Locate
trnL-UAG; trnL-CAA gene + 114367 114446 80 Locate
ccsA gene + 114531 115502 972 Locate
ndhD gene − 115769 117304 1536 Locate
psaC gene − 117393 117638 246 Locate
ndhE gene − 117889 118194 306 Locate
ndhG gene − 118408 118938 531 Locate
ndhI gene − 119287 119793 507 Locate
ndhA gene − 119869 122053 2185 Locate
ndhH gene − 122055 123236 1182 Locate
rps15 gene − 123333 123605 273 Locate
ycf1 gene − 123987 129662 5676 Locate
trnN-GUU gene + 129881 129952 72 Locate
trnR-ACG gene − 130522 130595 74 Locate
rrn5 gene − 130839 130959 121 Locate
rrn4.5 gene − 131215 131317 103 Locate
rrn23 gene − 131415 134225 2811 Locate
trnA-UGC gene − 134394 135281 888 Locate
trnI-GAU gene − 135346 136366 1021 Locate
rrn16 gene − 136665 138155 1491 Locate
trnV-GAC gene − 138401 138472 72 Locate
rps12 gene + 140079 140872 794 Locate
rps7 gene + 140926 141393 468 Locate
ndhB gene + 141668 143879 2212 Locate
trnL-CAA gene + 144427 144507 81 Locate
ycf15 gene − 144768 145016 249 Locate
ycf2 gene − 145098 151958 6861 Locate
trnI-CAU gene + 152057 152130 74 Locate
rpl23 gene + 152296 152577 282 Locate
rpl2 gene + 152596 154087 1492 Locate
Status Available
Accession NC_058322.1
Length 154,182 bp
GC content 38.1%
Annotated genes 135
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 14 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 1
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources