Callicarpa formosana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH(GUG) · NC_052748.1 · 4–78 bp · −
psbA · NC_052748.1 · 427–1,485 bp · −
trnK(UUU) · NC_052748.1 · 1,740–4,311 bp · −
matK · NC_052748.1 · 2,046–3,569 bp · −
rps16 · NC_052748.1 · 5,171–6,304 bp · −
trnQ(UUG) · NC_052748.1 · 7,446–7,517 bp · −
trnS(GCU) · NC_052748.1 · 8,654–8,741 bp · −
atpA · NC_052748.1 · 10,562–12,085 bp · −
atpF · NC_052748.1 · 12,153–13,401 bp · −
atpH · NC_052748.1 · 13,769–14,014 bp · −
atpI · NC_052748.1 · 15,030–15,773 bp · −
rps2 · NC_052748.1 · 16,004–16,714 bp · −
rpoC2 · NC_052748.1 · 16,930–21,111 bp · −
rpoC1 · NC_052748.1 · 21,266–24,091 bp · −
rpoB · NC_052748.1 · 24,118–27,306 bp · −
psbM · NC_052748.1 · 30,408–30,512 bp · −
trnD(GUC) · NC_052748.1 · 31,049–31,122 bp · −
trnY(GUA) · NC_052748.1 · 31,231–31,314 bp · −
trnE(UUC) · NC_052748.1 · 31,374–31,446 bp · −
trnT(GGU) · NC_052748.1 · 32,003–32,074 bp · −
trnS(UGA) · NC_052748.1 · 36,126–36,218 bp · −
trnfM(CAU) · NC_052748.1 · 37,234–37,307 bp · −
rps14 · NC_052748.1 · 37,457–37,759 bp · −
psaB · NC_052748.1 · 37,882–40,086 bp · −
psaA · NC_052748.1 · 40,112–42,364 bp · −
ycf3 · NC_052748.1 · 43,078–45,032 bp · −
rps4 · NC_052748.1 · 46,235–46,840 bp · −
trnT(UGU) · NC_052748.1 · 47,207–47,279 bp · −
ndhJ · NC_052748.1 · 49,611–50,087 bp · −
ndhK · NC_052748.1 · 50,188–50,865 bp · −
ndhC · NC_052748.1 · 50,919–51,281 bp · −
trnV(UAC) · NC_052748.1 · 52,472–53,124 bp · −
atpE · NC_052748.1 · 53,586–53,987 bp · −
atpB · NC_052748.1 · 53,984–55,480 bp · −
psbJ · NC_052748.1 · 65,116–65,238 bp · −
psbL · NC_052748.1 · 65,372–65,488 bp · −
psbF · NC_052748.1 · 65,512–65,631 bp · −
psbE · NC_052748.1 · 65,646–65,897 bp · −
trnW(CCA) · NC_052748.1 · 67,334–67,407 bp · −
trnP(UGG) · NC_052748.1 · 67,570–67,643 bp · −
rpl20 · NC_052748.1 · 69,561–69,947 bp · −
rps12 · NC_052748.1 · 70,765–70,878 bp · −
rps12 · NC_052748.1 · 98,249–99,042 bp · −
clpP · NC_052748.1 · 71,012–72,959 bp · −
psbN · NC_052748.1 · 75,308–75,439 bp · −
rpoA · NC_052748.1 · 78,850–79,863 bp · −
rps11 · NC_052748.1 · 79,935–80,351 bp · −
rpl36 · NC_052748.1 · 80,453–80,566 bp · −
infA · NC_052748.1 · 80,662–80,895 bp · −
rps8 · NC_052748.1 · 81,020–81,424 bp · −
rpl14 · NC_052748.1 · 81,597–81,965 bp · −
rpl16 · NC_052748.1 · 82,092–83,388 bp · −
rps3 · NC_052748.1 · 83,531–84,193 bp · −
rpl22 · NC_052748.1 · 84,203–84,640 bp · −
rps19 · NC_052748.1 · 84,700–84,978 bp · −
rpl2 · NC_052748.1 · 85,034–86,525 bp · −
rpl23 · NC_052748.1 · 86,544–86,825 bp · −
trnH(CAU) · NC_052748.1 · 86,991–87,064 bp · −
trnL(CAA) · NC_052748.1 · 94,614–94,694 bp · −
ndhB · NC_052748.1 · 95,242–97,453 bp · −
rps7 · NC_052748.1 · 97,728–98,195 bp · −
trnN(GUU) · NC_052748.1 · 109,168–109,239 bp · −
ndhF · NC_052748.1 · 110,657–112,900 bp · −
ndhD · NC_052748.1 · 115,780–117,282 bp · −
psaC · NC_052748.1 · 117,403–117,648 bp · −
ndhE · NC_052748.1 · 117,899–118,204 bp · −
ndhG · NC_052748.1 · 118,418–118,948 bp · −
ndhI · NC_052748.1 · 119,297–119,803 bp · −
ndhA · NC_052748.1 · 119,879–122,055 bp · −
ndhH · NC_052748.1 · 122,057–123,238 bp · −
rps15 · NC_052748.1 · 123,335–123,607 bp · −
ycf1 · NC_052748.1 · 123,989–129,580 bp · −
trnR(ACG) · NC_052748.1 · 130,552–130,624 bp · −
rrn5 · NC_052748.1 · 130,868–130,988 bp · −
rrn4.5 · NC_052748.1 · 131,244–131,346 bp · −
rrn23 · NC_052748.1 · 131,444–134,254 bp · −
trnA(UGC) · NC_052748.1 · 134,423–135,309 bp · −
trnI(GAU) · NC_052748.1 · 135,374–136,394 bp · −
rrn16 · NC_052748.1 · 136,693–138,183 bp · −
trnV(GAC) · NC_052748.1 · 138,429–138,500 bp · −
trnL(CAA) · NC_052748.1 · 144,455–144,535 bp · −
ycf15 · NC_052748.1 · 144,796–145,044 bp · −
ycf2 · NC_052748.1 · 145,126–151,986 bp · −
psbK · NC_052748.1 · 7,851–8,036 bp · +
psbI · NC_052748.1 · 8,426–8,536 bp · +
trnG(UCC) · NC_052748.1 · 9,449–10,208 bp · +
trnR(UCU) · NC_052748.1 · 10,383–10,457 bp · +
trnC(GCA) · NC_052748.1 · 28,506–28,576 bp · +
petN · NC_052748.1 · 29,408–29,497 bp · +
psbD · NC_052748.1 · 33,454–34,515 bp · +
psbC · NC_052748.1 · 34,463–35,884 bp · +
psbZ · NC_052748.1 · 36,548–36,736 bp · +
trnG(GCC) · NC_052748.1 · 37,012–37,082 bp · +
trnS(GGA) · NC_052748.1 · 45,868–45,954 bp · +
trnL(UAA) · NC_052748.1 · 47,977–48,549 bp · +
trnF(GAA) · NC_052748.1 · 48,891–48,963 bp · +
trnM(CAU) · NC_052748.1 · 53,306–53,378 bp · +
rbcL · NC_052748.1 · 56,266–57,705 bp · +
accD · NC_052748.1 · 58,392–59,885 bp · +
psaI · NC_052748.1 · 60,587–60,697 bp · +
ycf4 · NC_052748.1 · 61,136–61,690 bp · +
cemA · NC_052748.1 · 62,338–63,027 bp · +
petA · NC_052748.1 · 63,217–64,179 bp · +
petL · NC_052748.1 · 66,828–66,923 bp · +
petG · NC_052748.1 · 67,098–67,211 bp · +
psaJ · NC_052748.1 · 68,035–68,169 bp · +
rpl33 · NC_052748.1 · 68,649–68,849 bp · +
rps18 · NC_052748.1 · 69,020–69,325 bp · +
rps12 · NC_052748.1 · 140,107–140,900 bp · +
psbB · NC_052748.1 · 73,421–74,947 bp · +
psbT · NC_052748.1 · 75,140–75,247 bp · +
psbH · NC_052748.1 · 75,545–75,766 bp · +
petB · NC_052748.1 · 75,891–77,268 bp · +
petD · NC_052748.1 · 77,457–78,673 bp · +
ycf2 · NC_052748.1 · 87,163–94,023 bp · +
ycf15 · NC_052748.1 · 94,105–94,353 bp · +
trnV(GAC) · NC_052748.1 · 100,649–100,720 bp · +
rrn16 · NC_052748.1 · 100,966–102,456 bp · +
trnI(GAU) · NC_052748.1 · 102,755–103,775 bp · +
trnA(UGC) · NC_052748.1 · 103,840–104,726 bp · +
rrn23 · NC_052748.1 · 104,895–107,705 bp · +
rrn4.5 · NC_052748.1 · 107,803–107,905 bp · +
rrn5 · NC_052748.1 · 108,161–108,281 bp · +
trnR(ACG) · NC_052748.1 · 108,525–108,598 bp · +
ycf1 · NC_052748.1 · 109,569–110,654 bp · +
rpl32 · NC_052748.1 · 113,420–113,596 bp · +
trnL(UAG) · NC_052748.1 · 114,379–114,458 bp · +
trnN(GUU) · NC_052748.1 · 129,910–129,981 bp · +
rps7 · NC_052748.1 · 140,954–141,421 bp · +
ndhB · NC_052748.1 · 141,696–143,907 bp · +
trnH(CAU) · NC_052748.1 · 152,085–152,158 bp · +
rpl23 · NC_052748.1 · 152,324–152,605 bp · +
rpl2 · NC_052748.1 · 152,624–154,115 bp · +
rps19 · NC_052748.1 · 154,171–154,200 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa formosana
ANNOTATED PLASTOME
NC_052748.1
154,210 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38552 77105 115658 154210 bp
Forward strand 5′ → 3′
psbK psbI trnG(UCC) trnR(UCU) trnC(GCA) petN psbD psbC psbZ trnG(GCC) trnS(GGA) trnL(UAA) trnF(GAA) trnM(CAU) rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV(GAC) rrn16 trnI(GAU) trnA(UGC) rrn23 rrn4.5 rrn5 trnR(ACG) ycf1 rpl32 trnL(UAG) trnN(GUU) rps12 rps7 ndhB trnH(CAU) rpl23 rpl2 rps19
trnH(GUG) psbA trnK(UUU) matK rps16 trnQ(UUG) trnS(GCU) atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD(GUC) trnY(GUA) trnE(UUC) trnT(GGU) trnS(UGA) trnfM(CAU) rps14 psaB psaA ycf3 rps4 trnT(UGU) ndhJ ndhK ndhC trnV(UAC) atpE atpB psbJ psbL psbF psbE trnW(CCA) trnP(UGG) rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnH(CAU) trnL(CAA) ndhB rps7 rps12 trnN(GUU) ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR(ACG) rrn5 rrn4.5 rrn23 trnA(UGC) trnI(GAU) rrn16 trnV(GAC) trnL(CAA) ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH(GUG) gene − 4 78 75 Locate
psbA gene − 427 1485 1059 Locate
trnK(UUU) gene − 1740 4311 2572 Locate
matK gene − 2046 3569 1524 Locate
rps16 gene − 5171 6304 1134 Locate
trnQ(UUG) gene − 7446 7517 72 Locate
psbK gene + 7851 8036 186 Locate
psbI gene + 8426 8536 111 Locate
trnS(GCU) gene − 8654 8741 88 Locate
trnG(UCC) gene + 9449 10208 760 Locate
trnR(UCU) gene + 10383 10457 75 Locate
atpA gene − 10562 12085 1524 Locate
atpF gene − 12153 13401 1249 Locate
atpH gene − 13769 14014 246 Locate
atpI gene − 15030 15773 744 Locate
rps2 gene − 16004 16714 711 Locate
rpoC2 gene − 16930 21111 4182 Locate
rpoC1 gene − 21266 24091 2826 Locate
rpoB gene − 24118 27306 3189 Locate
trnC(GCA) gene + 28506 28576 71 Locate
petN gene + 29408 29497 90 Locate
psbM gene − 30408 30512 105 Locate
trnD(GUC) gene − 31049 31122 74 Locate
trnY(GUA) gene − 31231 31314 84 Locate
trnE(UUC) gene − 31374 31446 73 Locate
trnT(GGU) gene − 32003 32074 72 Locate
psbD gene + 33454 34515 1062 Locate
psbC gene + 34463 35884 1422 Locate
trnS(UGA) gene − 36126 36218 93 Locate
psbZ gene + 36548 36736 189 Locate
trnG(GCC) gene + 37012 37082 71 Locate
trnfM(CAU) gene − 37234 37307 74 Locate
rps14 gene − 37457 37759 303 Locate
psaB gene − 37882 40086 2205 Locate
psaA gene − 40112 42364 2253 Locate
ycf3 gene − 43078 45032 1955 Locate
trnS(GGA) gene + 45868 45954 87 Locate
rps4 gene − 46235 46840 606 Locate
trnT(UGU) gene − 47207 47279 73 Locate
trnL(UAA) gene + 47977 48549 573 Locate
trnF(GAA) gene + 48891 48963 73 Locate
ndhJ gene − 49611 50087 477 Locate
ndhK gene − 50188 50865 678 Locate
ndhC gene − 50919 51281 363 Locate
trnV(UAC) gene − 52472 53124 653 Locate
trnM(CAU) gene + 53306 53378 73 Locate
atpE gene − 53586 53987 402 Locate
atpB gene − 53984 55480 1497 Locate
rbcL gene + 56266 57705 1440 Locate
accD gene + 58392 59885 1494 Locate
psaI gene + 60587 60697 111 Locate
ycf4 gene + 61136 61690 555 Locate
cemA gene + 62338 63027 690 Locate
petA gene + 63217 64179 963 Locate
psbJ gene − 65116 65238 123 Locate
psbL gene − 65372 65488 117 Locate
psbF gene − 65512 65631 120 Locate
psbE gene − 65646 65897 252 Locate
petL gene + 66828 66923 96 Locate
petG gene + 67098 67211 114 Locate
trnW(CCA) gene − 67334 67407 74 Locate
trnP(UGG) gene − 67570 67643 74 Locate
psaJ gene + 68035 68169 135 Locate
rpl33 gene + 68649 68849 201 Locate
rps18 gene + 69020 69325 306 Locate
rpl20 gene − 69561 69947 387 Locate
rps12 gene − 70765 70878 114 Locate
clpP gene − 71012 72959 1948 Locate
psbB gene + 73421 74947 1527 Locate
psbT gene + 75140 75247 108 Locate
psbN gene − 75308 75439 132 Locate
psbH gene + 75545 75766 222 Locate
petB gene + 75891 77268 1378 Locate
petD gene + 77457 78673 1217 Locate
rpoA gene − 78850 79863 1014 Locate
rps11 gene − 79935 80351 417 Locate
rpl36 gene − 80453 80566 114 Locate
infA gene − 80662 80895 234 Locate
rps8 gene − 81020 81424 405 Locate
rpl14 gene − 81597 81965 369 Locate
rpl16 gene − 82092 83388 1297 Locate
rps3 gene − 83531 84193 663 Locate
rpl22 gene − 84203 84640 438 Locate
rps19 gene − 84700 84978 279 Locate
rpl2 gene − 85034 86525 1492 Locate
rpl23 gene − 86544 86825 282 Locate
trnH(CAU) gene − 86991 87064 74 Locate
ycf2 gene + 87163 94023 6861 Locate
ycf15 gene + 94105 94353 249 Locate
trnL(CAA) gene − 94614 94694 81 Locate
ndhB gene − 95242 97453 2212 Locate
rps7 gene − 97728 98195 468 Locate
rps12 gene − 98249 99042 794 Locate
trnV(GAC) gene + 100649 100720 72 Locate
rrn16 gene + 100966 102456 1491 Locate
trnI(GAU) gene + 102755 103775 1021 Locate
trnA(UGC) gene + 103840 104726 887 Locate
rrn23 gene + 104895 107705 2811 Locate
rrn4.5 gene + 107803 107905 103 Locate
rrn5 gene + 108161 108281 121 Locate
trnR(ACG) gene + 108525 108598 74 Locate
trnN(GUU) gene − 109168 109239 72 Locate
ycf1 gene + 109569 110654 1086 Locate
ndhF gene − 110657 112900 2244 Locate
rpl32 gene + 113420 113596 177 Locate
trnL(UAG) gene + 114379 114458 80 Locate
ndhD gene − 115780 117282 1503 Locate
psaC gene − 117403 117648 246 Locate
ndhE gene − 117899 118204 306 Locate
ndhG gene − 118418 118948 531 Locate
ndhI gene − 119297 119803 507 Locate
ndhA gene − 119879 122055 2177 Locate
ndhH gene − 122057 123238 1182 Locate
rps15 gene − 123335 123607 273 Locate
ycf1 gene − 123989 129580 5592 Locate
trnN(GUU) gene + 129910 129981 72 Locate
trnR(ACG) gene − 130552 130624 73 Locate
rrn5 gene − 130868 130988 121 Locate
rrn4.5 gene − 131244 131346 103 Locate
rrn23 gene − 131444 134254 2811 Locate
trnA(UGC) gene − 134423 135309 887 Locate
trnI(GAU) gene − 135374 136394 1021 Locate
rrn16 gene − 136693 138183 1491 Locate
trnV(GAC) gene − 138429 138500 72 Locate
rps12 gene + 140107 140900 794 Locate
rps7 gene + 140954 141421 468 Locate
ndhB gene + 141696 143907 2212 Locate
trnL(CAA) gene − 144455 144535 81 Locate
ycf15 gene − 144796 145044 249 Locate
ycf2 gene − 145126 151986 6861 Locate
trnH(CAU) gene + 152085 152158 74 Locate
rpl23 gene + 152324 152605 282 Locate
rpl2 gene + 152624 154115 1492 Locate
rps19 gene + 154171 154200 30 Locate
Status Available
Accession NC_052748.1
Length 154,210 bp
GC content 38.1%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources