Callicarpa kwangtungensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
ycf1 · NC_084107.1 · 1–1,077 bp · −
ycf1 · NC_084107.1 · 149,599–154,185 bp · −
trnR-ACG · NC_084107.1 · 1,937–2,010 bp · −
rrn5 · NC_084107.1 · 2,254–2,374 bp · −
rrn4.5 · NC_084107.1 · 2,630–2,732 bp · −
rrn23 · NC_084107.1 · 2,830–5,640 bp · −
trnA-UGC · NC_084107.1 · 5,809–6,694 bp · −
trnI-GAU · NC_084107.1 · 6,759–7,779 bp · −
rrn16 · NC_084107.1 · 8,078–9,568 bp · −
trnV-GAC · NC_084107.1 · 9,814–9,885 bp · −
rps12 · NC_084107.1 · 96,355–96,468 bp · −
ycf15 · NC_084107.1 · 16,182–16,430 bp · −
ycf2 · NC_084107.1 · 16,512–23,372 bp · −
trnH-GUG · NC_084107.1 · 25,600–25,674 bp · −
psbA · NC_084107.1 · 26,030–27,088 bp · −
trnK-UUU · NC_084107.1 · 27,342–29,913 bp · −
matK · NC_084107.1 · 27,648–29,171 bp · −
rps16 · NC_084107.1 · 30,779–31,912 bp · −
trnQ-UUG · NC_084107.1 · 33,068–33,139 bp · −
trnS-GCU · NC_084107.1 · 34,278–34,365 bp · −
atpA · NC_084107.1 · 36,206–37,729 bp · −
atpF · NC_084107.1 · 37,797–39,043 bp · −
atpH · NC_084107.1 · 39,414–39,659 bp · −
atpI · NC_084107.1 · 40,668–41,411 bp · −
rps2 · NC_084107.1 · 41,642–42,352 bp · −
rpoC1 · NC_084107.1 · 46,905–49,730 bp · −
rpoB · NC_084107.1 · 49,757–52,969 bp · −
psbM · NC_084107.1 · 56,059–56,163 bp · −
trnD-GUC · NC_084107.1 · 56,685–56,758 bp · −
trnY-GUA · NC_084107.1 · 56,867–56,950 bp · −
trnE-UUC · NC_084107.1 · 57,010–57,082 bp · −
trnS-UGA · NC_084107.1 · 61,762–61,854 bp · −
trnfM-CAU · NC_084107.1 · 62,870–62,943 bp · −
rps14 · NC_084107.1 · 63,093–63,395 bp · −
psaB · NC_084107.1 · 63,518–65,722 bp · −
psaA · NC_084107.1 · 65,748–68,000 bp · −
ycf3 · NC_084107.1 · 68,709–70,663 bp · −
rps4 · NC_084107.1 · 71,866–72,471 bp · −
trnT-UGU · NC_084107.1 · 72,836–72,908 bp · −
ndhJ · NC_084107.1 · 75,223–75,699 bp · −
ndhK · NC_084107.1 · 75,800–76,477 bp · −
ndhC · NC_084107.1 · 76,531–76,893 bp · −
trnV-UAC · NC_084107.1 · 78,082–78,734 bp · −
atpE · NC_084107.1 · 79,196–79,597 bp · −
atpB · NC_084107.1 · 79,594–81,090 bp · −
psbJ · NC_084107.1 · 90,698–90,820 bp · −
psbL · NC_084107.1 · 90,954–91,070 bp · −
psbF · NC_084107.1 · 91,094–91,213 bp · −
psbE · NC_084107.1 · 91,228–91,479 bp · −
trnW-CCA · NC_084107.1 · 92,918–92,991 bp · −
trnP-UGG · NC_084107.1 · 93,153–93,226 bp · −
rpl20 · NC_084107.1 · 95,143–95,529 bp · −
rps12 · NC_084107.1 · 123,865–124,658 bp · −
clpP · NC_084107.1 · 96,626–98,574 bp · −
psbN · NC_084107.1 · 100,916–101,047 bp · −
rpoA · NC_084107.1 · 104,468–105,481 bp · −
rps11 · NC_084107.1 · 105,553–105,969 bp · −
rpl36 · NC_084107.1 · 106,071–106,184 bp · −
infA · NC_084107.1 · 106,280–106,513 bp · −
rps8 · NC_084107.1 · 106,638–107,042 bp · −
rpl14 · NC_084107.1 · 107,214–107,582 bp · −
rpl16 · NC_084107.1 · 107,709–109,004 bp · −
rps3 · NC_084107.1 · 109,147–109,809 bp · −
rpl22 · NC_084107.1 · 109,819–110,256 bp · −
rps19 · NC_084107.1 · 110,316–110,594 bp · −
rpl2 · NC_084107.1 · 110,650–112,141 bp · −
rpl23 · NC_084107.1 · 112,160–112,441 bp · −
trnI-CAU · NC_084107.1 · 112,607–112,680 bp · −
trnL-CAA · NC_084107.1 · 120,230–120,310 bp · −
ndhB · NC_084107.1 · 120,858–123,069 bp · −
rps7 · NC_084107.1 · 123,344–123,811 bp · −
trnN-GUU · NC_084107.1 · 134,784–134,855 bp · −
ndhF · NC_084107.1 · 136,260–138,503 bp · −
ndhD · NC_084107.1 · 141,382–142,884 bp · −
psaC · NC_084107.1 · 143,005–143,250 bp · −
ndhE · NC_084107.1 · 143,501–143,806 bp · −
ndhG · NC_084107.1 · 144,020–144,550 bp · −
ndhI · NC_084107.1 · 144,899–145,405 bp · −
ndhA · NC_084107.1 · 145,481–147,665 bp · −
ndhH · NC_084107.1 · 147,667–148,848 bp · −
rps15 · NC_084107.1 · 148,945–149,217 bp · −
trnN-GUU · NC_084107.1 · 1,296–1,367 bp · +
rps12 · NC_084107.1 · 11,493–12,286 bp · +
rps7 · NC_084107.1 · 12,340–12,807 bp · +
ndhB · NC_084107.1 · 13,082–15,293 bp · +
trnL-CAA · NC_084107.1 · 15,841–15,921 bp · +
trnI-CAU · NC_084107.1 · 23,471–23,544 bp · +
rpl23 · NC_084107.1 · 23,710–23,991 bp · +
rpl2 · NC_084107.1 · 24,010–25,501 bp · +
psbK · NC_084107.1 · 33,473–33,658 bp · +
psbI · NC_084107.1 · 34,050–34,160 bp · +
trnG-UCC · NC_084107.1 · 35,093–35,853 bp · +
trnR-UCU · NC_084107.1 · 36,030–36,101 bp · +
trnC-GCA · NC_084107.1 · 54,145–54,215 bp · +
petN · NC_084107.1 · 55,047–55,136 bp · +
trnT-GGU · NC_084107.1 · 57,639–57,710 bp · +
psbD · NC_084107.1 · 59,090–60,151 bp · +
psbC · NC_084107.1 · 60,099–61,520 bp · +
psbZ · NC_084107.1 · 62,184–62,372 bp · +
trnG-GCC · NC_084107.1 · 62,648–62,718 bp · +
trnS-GGA · NC_084107.1 · 71,499–71,585 bp · +
trnL-UAA · NC_084107.1 · 73,583–74,155 bp · +
trnF-GAA · NC_084107.1 · 74,501–74,573 bp · +
trnM-CAU · NC_084107.1 · 78,916–78,988 bp · +
rbcL · NC_084107.1 · 81,876–83,315 bp · +
accD · NC_084107.1 · 83,931–85,475 bp · +
psaI · NC_084107.1 · 86,178–86,288 bp · +
ycf4 · NC_084107.1 · 86,728–87,282 bp · +
cemA · NC_084107.1 · 87,930–88,619 bp · +
petA · NC_084107.1 · 88,809–89,771 bp · +
petL · NC_084107.1 · 92,412–92,507 bp · +
petG · NC_084107.1 · 92,682–92,795 bp · +
psaJ · NC_084107.1 · 93,618–93,752 bp · +
rpl33 · NC_084107.1 · 94,232–94,432 bp · +
rps18 · NC_084107.1 · 94,603–94,908 bp · +
psbB · NC_084107.1 · 99,029–100,555 bp · +
psbT · NC_084107.1 · 100,748–100,855 bp · +
psbH · NC_084107.1 · 101,135–101,374 bp · +
petB · NC_084107.1 · 101,499–102,878 bp · +
petD · NC_084107.1 · 103,067–104,291 bp · +
ycf2 · NC_084107.1 · 112,779–119,639 bp · +
ycf15 · NC_084107.1 · 119,772–119,969 bp · +
trnV-GAC · NC_084107.1 · 126,266–126,337 bp · +
rrn16 · NC_084107.1 · 126,583–128,073 bp · +
trnI-GAU · NC_084107.1 · 128,372–129,392 bp · +
trnA-UGC · NC_084107.1 · 129,457–130,342 bp · +
rrn23 · NC_084107.1 · 130,511–133,321 bp · +
rrn4.5 · NC_084107.1 · 133,419–133,521 bp · +
rrn5 · NC_084107.1 · 133,777–133,897 bp · +
trnR-ACG · NC_084107.1 · 134,141–134,214 bp · +
rpl32 · NC_084107.1 · 139,022–139,198 bp · +
trnL-UAG · NC_084107.1 · 139,980–140,059 bp · +
ccsA · NC_084107.1 · 140,144–141,115 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa kwangtungensis
ANNOTATED PLASTOME
NC_084107.1
154,185 bp · 131 genes
Gene function
Other
Transfer RNA
Ribosomal RNA
Ribosomal protein
NADH dehydrogenase
Photosystem II
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
0 38546 77092 115639 154185 bp
Forward strand 5′ → 3′
trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA
ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2 trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
ycf1 gene − 1 1077 1077 Locate
trnN-GUU gene + 1296 1367 72 Locate
trnR-ACG gene − 1937 2010 74 Locate
rrn5 gene − 2254 2374 121 Locate
rrn4.5 gene − 2630 2732 103 Locate
rrn23 gene − 2830 5640 2811 Locate
trnA-UGC gene − 5809 6694 886 Locate
trnI-GAU gene − 6759 7779 1021 Locate
rrn16 gene − 8078 9568 1491 Locate
trnV-GAC gene − 9814 9885 72 Locate
rps12 gene + 11493 12286 794 Locate
rps7 gene + 12340 12807 468 Locate
ndhB gene + 13082 15293 2212 Locate
trnL-CAA gene + 15841 15921 81 Locate
ycf15 gene − 16182 16430 249 Locate
ycf2 gene − 16512 23372 6861 Locate
trnI-CAU gene + 23471 23544 74 Locate
rpl23 gene + 23710 23991 282 Locate
rpl2 gene + 24010 25501 1492 Locate
trnH-GUG gene − 25600 25674 75 Locate
psbA gene − 26030 27088 1059 Locate
trnK-UUU gene − 27342 29913 2572 Locate
matK gene − 27648 29171 1524 Locate
rps16 gene − 30779 31912 1134 Locate
trnQ-UUG gene − 33068 33139 72 Locate
psbK gene + 33473 33658 186 Locate
psbI gene + 34050 34160 111 Locate
trnS-GCU gene − 34278 34365 88 Locate
trnG-UCC gene + 35093 35853 761 Locate
trnR-UCU gene + 36030 36101 72 Locate
atpA gene − 36206 37729 1524 Locate
atpF gene − 37797 39043 1247 Locate
atpH gene − 39414 39659 246 Locate
atpI gene − 40668 41411 744 Locate
rps2 gene − 41642 42352 711 Locate
rpoC1 gene − 46905 49730 2826 Locate
rpoB gene − 49757 52969 3213 Locate
trnC-GCA gene + 54145 54215 71 Locate
petN gene + 55047 55136 90 Locate
psbM gene − 56059 56163 105 Locate
trnD-GUC gene − 56685 56758 74 Locate
trnY-GUA gene − 56867 56950 84 Locate
trnE-UUC gene − 57010 57082 73 Locate
trnT-GGU gene + 57639 57710 72 Locate
psbD gene + 59090 60151 1062 Locate
psbC gene + 60099 61520 1422 Locate
trnS-UGA gene − 61762 61854 93 Locate
psbZ gene + 62184 62372 189 Locate
trnG-GCC gene + 62648 62718 71 Locate
trnfM-CAU gene − 62870 62943 74 Locate
rps14 gene − 63093 63395 303 Locate
psaB gene − 63518 65722 2205 Locate
psaA gene − 65748 68000 2253 Locate
ycf3 gene − 68709 70663 1955 Locate
trnS-GGA gene + 71499 71585 87 Locate
rps4 gene − 71866 72471 606 Locate
trnT-UGU gene − 72836 72908 73 Locate
trnL-UAA gene + 73583 74155 573 Locate
trnF-GAA gene + 74501 74573 73 Locate
ndhJ gene − 75223 75699 477 Locate
ndhK gene − 75800 76477 678 Locate
ndhC gene − 76531 76893 363 Locate
trnV-UAC gene − 78082 78734 653 Locate
trnM-CAU gene + 78916 78988 73 Locate
atpE gene − 79196 79597 402 Locate
atpB gene − 79594 81090 1497 Locate
rbcL gene + 81876 83315 1440 Locate
accD gene + 83931 85475 1545 Locate
psaI gene + 86178 86288 111 Locate
ycf4 gene + 86728 87282 555 Locate
cemA gene + 87930 88619 690 Locate
petA gene + 88809 89771 963 Locate
psbJ gene − 90698 90820 123 Locate
psbL gene − 90954 91070 117 Locate
psbF gene − 91094 91213 120 Locate
psbE gene − 91228 91479 252 Locate
petL gene + 92412 92507 96 Locate
petG gene + 92682 92795 114 Locate
trnW-CCA gene − 92918 92991 74 Locate
trnP-UGG gene − 93153 93226 74 Locate
psaJ gene + 93618 93752 135 Locate
rpl33 gene + 94232 94432 201 Locate
rps18 gene + 94603 94908 306 Locate
rpl20 gene − 95143 95529 387 Locate
rps12 gene − 96355 96468 114 Locate
clpP gene − 96626 98574 1949 Locate
psbB gene + 99029 100555 1527 Locate
psbT gene + 100748 100855 108 Locate
psbN gene − 100916 101047 132 Locate
psbH gene + 101135 101374 240 Locate
petB gene + 101499 102878 1380 Locate
petD gene + 103067 104291 1225 Locate
rpoA gene − 104468 105481 1014 Locate
rps11 gene − 105553 105969 417 Locate
rpl36 gene − 106071 106184 114 Locate
infA gene − 106280 106513 234 Locate
rps8 gene − 106638 107042 405 Locate
rpl14 gene − 107214 107582 369 Locate
rpl16 gene − 107709 109004 1296 Locate
rps3 gene − 109147 109809 663 Locate
rpl22 gene − 109819 110256 438 Locate
rps19 gene − 110316 110594 279 Locate
rpl2 gene − 110650 112141 1492 Locate
rpl23 gene − 112160 112441 282 Locate
trnI-CAU gene − 112607 112680 74 Locate
ycf2 gene + 112779 119639 6861 Locate
ycf15 gene + 119772 119969 198 Locate
trnL-CAA gene − 120230 120310 81 Locate
ndhB gene − 120858 123069 2212 Locate
rps7 gene − 123344 123811 468 Locate
rps12 gene − 123865 124658 794 Locate
trnV-GAC gene + 126266 126337 72 Locate
rrn16 gene + 126583 128073 1491 Locate
trnI-GAU gene + 128372 129392 1021 Locate
trnA-UGC gene + 129457 130342 886 Locate
rrn23 gene + 130511 133321 2811 Locate
rrn4.5 gene + 133419 133521 103 Locate
rrn5 gene + 133777 133897 121 Locate
trnR-ACG gene + 134141 134214 74 Locate
trnN-GUU gene − 134784 134855 72 Locate
ndhF gene − 136260 138503 2244 Locate
rpl32 gene + 139022 139198 177 Locate
trnL-UAG gene + 139980 140059 80 Locate
ccsA gene + 140144 141115 972 Locate
ndhD gene − 141382 142884 1503 Locate
psaC gene − 143005 143250 246 Locate
ndhE gene − 143501 143806 306 Locate
ndhG gene − 144020 144550 531 Locate
ndhI gene − 144899 145405 507 Locate
ndhA gene − 145481 147665 2185 Locate
ndhH gene − 147667 148848 1182 Locate
rps15 gene − 148945 149217 273 Locate
ycf1 gene − 149599 154185 4587 Locate
Status Available
Accession NC_084107.1
Length 154,185 bp
GC content 38.1%
Annotated genes 131
Gene sequence records 8
Other 15 Translation Rna 37 Ribosomal Rna 8 Ribosomal Protein 26 Nad Dehydrogenase 12 Photosystem Ii 15 Atp Synthase 6 Rna Polymerase 3 Cytochrome 6 Photosystem I 5
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources