Callicarpa longifolia var. floccosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · MW149076.1 · 1–74 bp · −
psbA · MW149076.1 · 432–1,490 bp · −
trnK-UUU · MW149076.1 · 1,745–4,316 bp · −
matK · MW149076.1 · 2,051–3,574 bp · −
rps16 · MW149076.1 · 5,176–6,309 bp · −
trnQ-UUG · MW149076.1 · 7,451–7,522 bp · −
trnS-GCU · MW149076.1 · 8,659–8,746 bp · −
atpA · MW149076.1 · 10,567–12,090 bp · −
atpF · MW149076.1 · 12,158–13,405 bp · −
atpH · MW149076.1 · 13,773–14,018 bp · −
atpI · MW149076.1 · 15,034–15,777 bp · −
rps2 · MW149076.1 · 16,008–16,844 bp · −
rpoC2 · MW149076.1 · 16,934–21,115 bp · −
rpoC1 · MW149076.1 · 21,270–24,094 bp · −
rpoB · MW149076.1 · 24,121–27,333 bp · −
psbM · MW149076.1 · 30,454–30,558 bp · −
trnD-GUC · MW149076.1 · 31,095–31,168 bp · −
trnY-GUA · MW149076.1 · 31,277–31,360 bp · −
trnE-UUC · MW149076.1 · 31,420–31,492 bp · −
trnS-UGA · MW149076.1 · 36,172–36,264 bp · −
trnfM-CAU · MW149076.1 · 37,280–37,353 bp · −
rps14 · MW149076.1 · 37,503–37,805 bp · −
psaB · MW149076.1 · 37,928–40,132 bp · −
psaA · MW149076.1 · 40,158–42,410 bp · −
ycf3 · MW149076.1 · 43,124–45,078 bp · −
rps4 · MW149076.1 · 46,297–46,902 bp · −
trnT-UGU · MW149076.1 · 47,271–47,343 bp · −
ndhJ · MW149076.1 · 49,675–50,151 bp · −
ndhK · MW149076.1 · 50,252–51,013 bp · −
ndhC · MW149076.1 · 50,983–51,345 bp · −
trnV-UAC · MW149076.1 · 52,536–53,188 bp · −
atpE · MW149076.1 · 53,650–54,051 bp · −
atpB · MW149076.1 · 54,048–55,544 bp · −
psbJ · MW149076.1 · 65,182–65,304 bp · −
psbL · MW149076.1 · 65,438–65,659 bp · −
psbF · MW149076.1 · 65,578–65,697 bp · −
psbE · MW149076.1 · 65,712–65,963 bp · −
trnW-CCA · MW149076.1 · 67,400–67,473 bp · −
trnP-UGG · MW149076.1 · 67,636–67,709 bp · −
rpl20 · MW149076.1 · 69,627–70,013 bp · −
rps12 · MW149076.1 · 70,831–70,944 bp · −
rps12 · MW149076.1 · 98,316–99,109 bp · −
clpP · MW149076.1 · 71,078–73,025 bp · −
psbN · MW149076.1 · 75,374–75,505 bp · −
rpoA · MW149076.1 · 78,916–79,929 bp · −
rps11 · MW149076.1 · 80,001–80,417 bp · −
rpl36 · MW149076.1 · 80,519–80,632 bp · −
infA · MW149076.1 · 80,728–80,961 bp · −
rps8 · MW149076.1 · 81,086–81,490 bp · −
rpl14 · MW149076.1 · 81,665–82,033 bp · −
rpl16 · MW149076.1 · 82,160–83,455 bp · −
rps3 · MW149076.1 · 83,598–84,260 bp · −
rpl22 · MW149076.1 · 84,270–84,707 bp · −
rps19 · MW149076.1 · 84,767–85,039 bp · −
rpl23 · MW149076.1 · 86,611–86,892 bp · −
trnI-CAU · MW149076.1 · 87,058–87,131 bp · −
trnL-CAA · MW149076.1 · 94,681–94,761 bp · −
ndhB · MW149076.1 · 95,309–97,520 bp · −
rps7 · MW149076.1 · 97,795–98,262 bp · −
trnN-GUU · MW149076.1 · 109,233–109,304 bp · −
ndhF · MW149076.1 · 110,722–112,965 bp · −
ndhD · MW149076.1 · 115,846–117,348 bp · −
psaC · MW149076.1 · 117,469–117,714 bp · −
ndhE · MW149076.1 · 117,965–118,267 bp · −
ndhG · MW149076.1 · 118,484–119,014 bp · −
ndhI · MW149076.1 · 119,363–119,869 bp · −
ndhA · MW149076.1 · 119,945–122,129 bp · −
ndhH · MW149076.1 · 122,131–123,366 bp · −
rps15 · MW149076.1 · 123,409–123,744 bp · −
ycf1 · MW149076.1 · 124,063–129,765 bp · −
trnR-ACG · MW149076.1 · 130,625–130,698 bp · −
rrn5 · MW149076.1 · 130,942–131,062 bp · −
rrn4.5 · MW149076.1 · 131,318–131,420 bp · −
rrn23 · MW149076.1 · 131,520–134,328 bp · −
trnA-UGC · MW149076.1 · 134,497–135,381 bp · −
trnI-GAU · MW149076.1 · 135,446–136,466 bp · −
rrn16 · MW149076.1 · 136,765–138,255 bp · −
trnV-GAC · MW149076.1 · 138,501–138,572 bp · −
ycf2 · MW149076.1 · 145,198–152,058 bp · −
psbK · MW149076.1 · 7,856–8,041 bp · +
psbI · MW149076.1 · 8,431–8,541 bp · +
trnG-UCC · MW149076.1 · 9,454–10,213 bp · +
trnR-UCU · MW149076.1 · 10,391–10,462 bp · +
trnC-GCA · MW149076.1 · 28,509–28,579 bp · +
petN · MW149076.1 · 29,411–29,500 bp · +
trnT-GGU · MW149076.1 · 32,049–32,120 bp · +
psbD · MW149076.1 · 33,500–34,561 bp · +
psbC · MW149076.1 · 34,509–35,930 bp · +
psbZ · MW149076.1 · 36,594–36,782 bp · +
trnG-GCC · MW149076.1 · 37,058–37,128 bp · +
trnS-GGA · MW149076.1 · 45,930–46,016 bp · +
trnL-UAA · MW149076.1 · 48,041–48,613 bp · +
trnF-GAA · MW149076.1 · 48,955–49,027 bp · +
trnM-CAU · MW149076.1 · 53,370–53,442 bp · +
rbcL · MW149076.1 · 56,309–57,769 bp · +
accD · MW149076.1 · 58,405–59,949 bp · +
psaI · MW149076.1 · 60,651–60,761 bp · +
ycf4 · MW149076.1 · 61,200–61,754 bp · +
cemA · MW149076.1 · 62,403–63,092 bp · +
petA · MW149076.1 · 63,282–64,244 bp · +
petL · MW149076.1 · 66,894–66,989 bp · +
petG · MW149076.1 · 67,164–67,277 bp · +
psaJ · MW149076.1 · 68,101–68,235 bp · +
rpl33 · MW149076.1 · 68,715–68,915 bp · +
rps18 · MW149076.1 · 69,086–69,391 bp · +
rps12 · MW149076.1 · 140,179–140,972 bp · +
psbB · MW149076.1 · 73,487–75,013 bp · +
psbT · MW149076.1 · 75,206–75,313 bp · +
psbH · MW149076.1 · 75,611–75,832 bp · +
petB · MW149076.1 · 75,957–77,334 bp · +
petD · MW149076.1 · 77,523–78,739 bp · +
ycf2 · MW149076.1 · 87,230–94,090 bp · +
trnV-GAC · MW149076.1 · 100,716–100,787 bp · +
rrn16 · MW149076.1 · 101,033–102,523 bp · +
trnI-GAU · MW149076.1 · 102,822–103,842 bp · +
trnA-UGC · MW149076.1 · 103,907–104,791 bp · +
rrn23 · MW149076.1 · 104,960–107,768 bp · +
rrn4.5 · MW149076.1 · 107,868–107,970 bp · +
rrn5 · MW149076.1 · 108,226–108,346 bp · +
trnR-ACG · MW149076.1 · 108,590–108,663 bp · +
rpl32 · MW149076.1 · 113,485–113,661 bp · +
trnL-UAG · MW149076.1 · 114,445–114,524 bp · +
ccsA · MW149076.1 · 114,608–115,579 bp · +
trnN-GUU · MW149076.1 · 129,984–130,055 bp · +
rps7 · MW149076.1 · 141,026–141,493 bp · +
ndhB · MW149076.1 · 141,768–143,979 bp · +
trnL-CAA · MW149076.1 · 144,527–144,607 bp · +
trnI-CAU · MW149076.1 · 152,157–152,230 bp · +
rpl23 · MW149076.1 · 152,396–152,677 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa longifolia var. floccosa
ANNOTATED PLASTOME
MW149076.1
154,285 bp · 128 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38571 77142 115714 154285 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
129 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 74 74 Locate
psbA gene − 432 1490 1059 Locate
trnK-UUU gene − 1745 4316 2572 Locate
matK gene − 2051 3574 1524 Locate
rps16 gene − 5176 6309 1134 Locate
trnQ-UUG gene − 7451 7522 72 Locate
psbK gene + 7856 8041 186 Locate
psbI gene + 8431 8541 111 Locate
trnS-GCU gene − 8659 8746 88 Locate
trnG-UCC gene + 9454 10213 760 Locate
trnR-UCU gene + 10391 10462 72 Locate
atpA gene − 10567 12090 1524 Locate
atpF gene − 12158 13405 1248 Locate
atpH gene − 13773 14018 246 Locate
atpI gene − 15034 15777 744 Locate
rps2 gene − 16008 16844 837 Locate
rpoC2 gene − 16934 21115 4182 Locate
rpoC1 gene − 21270 24094 2825 Locate
rpoB gene − 24121 27333 3213 Locate
trnC-GCA gene + 28509 28579 71 Locate
petN gene + 29411 29500 90 Locate
psbM gene − 30454 30558 105 Locate
trnD-GUC gene − 31095 31168 74 Locate
trnY-GUA gene − 31277 31360 84 Locate
trnE-UUC gene − 31420 31492 73 Locate
trnT-GGU gene + 32049 32120 72 Locate
psbD gene + 33500 34561 1062 Locate
psbC gene + 34509 35930 1422 Locate
trnS-UGA gene − 36172 36264 93 Locate
psbZ gene + 36594 36782 189 Locate
trnG-GCC gene + 37058 37128 71 Locate
trnfM-CAU gene − 37280 37353 74 Locate
rps14 gene − 37503 37805 303 Locate
psaB gene − 37928 40132 2205 Locate
psaA gene − 40158 42410 2253 Locate
ycf3 gene − 43124 45078 1955 Locate
trnS-GGA gene + 45930 46016 87 Locate
rps4 gene − 46297 46902 606 Locate
trnT-UGU gene − 47271 47343 73 Locate
trnL-UAA gene + 48041 48613 573 Locate
trnF-GAA gene + 48955 49027 73 Locate
ndhJ gene − 49675 50151 477 Locate
ndhK gene − 50252 51013 762 Locate
ndhC gene − 50983 51345 363 Locate
trnV-UAC gene − 52536 53188 653 Locate
trnM-CAU gene + 53370 53442 73 Locate
atpE gene − 53650 54051 402 Locate
atpB gene − 54048 55544 1497 Locate
rbcL gene + 56309 57769 1461 Locate
accD gene + 58405 59949 1545 Locate
psaI gene + 60651 60761 111 Locate
ycf4 gene + 61200 61754 555 Locate
cemA gene + 62403 63092 690 Locate
petA gene + 63282 64244 963 Locate
psbJ gene − 65182 65304 123 Locate
psbL gene − 65438 65659 222 Locate
psbF gene − 65578 65697 120 Locate
psbE gene − 65712 65963 252 Locate
petL gene + 66894 66989 96 Locate
petG gene + 67164 67277 114 Locate
trnW-CCA gene − 67400 67473 74 Locate
trnP-UGG gene − 67636 67709 74 Locate
psaJ gene + 68101 68235 135 Locate
rpl33 gene + 68715 68915 201 Locate
rps18 gene + 69086 69391 306 Locate
rpl20 gene − 69627 70013 387 Locate
rps12 gene − 70831 70944 114 Locate
clpP gene − 71078 73025 1948 Locate
psbB gene + 73487 75013 1527 Locate
psbT gene + 75206 75313 108 Locate
psbN gene − 75374 75505 132 Locate
psbH gene + 75611 75832 222 Locate
petB gene + 75957 77334 1378 Locate
petD gene + 77523 78739 1217 Locate
rpoA gene − 78916 79929 1014 Locate
rps11 gene − 80001 80417 417 Locate
rpl36 gene − 80519 80632 114 Locate
infA gene − 80728 80961 234 Locate
rps8 gene − 81086 81490 405 Locate
rpl14 gene − 81665 82033 369 Locate
rpl16 gene − 82160 83455 1296 Locate
rps3 gene − 83598 84260 663 Locate
rpl22 gene − 84270 84707 438 Locate
rps19 gene − 84767 85039 273 Locate
rpl23 gene − 86611 86892 282 Locate
trnI-CAU gene − 87058 87131 74 Locate
ycf2 gene + 87230 94090 6861 Locate
trnL-CAA gene − 94681 94761 81 Locate
ndhB gene − 95309 97520 2212 Locate
rps7 gene − 97795 98262 468 Locate
rps12 gene − 98316 99109 794 Locate
trnV-GAC gene + 100716 100787 72 Locate
rrn16 gene + 101033 102523 1491 Locate
trnI-GAU gene + 102822 103842 1021 Locate
trnA-UGC gene + 103907 104791 885 Locate
rrn23 gene + 104960 107768 2809 Locate
rrn4.5 gene + 107868 107970 103 Locate
rrn5 gene + 108226 108346 121 Locate
trnR-ACG gene + 108590 108663 74 Locate
trnN-GUU gene − 109233 109304 72 Locate
ndhF gene − 110722 112965 2244 Locate
rpl32 gene + 113485 113661 177 Locate
trnL-UAG gene + 114445 114524 80 Locate
ccsA gene + 114608 115579 972 Locate
ndhD gene − 115846 117348 1503 Locate
psaC gene − 117469 117714 246 Locate
ndhE gene − 117965 118267 303 Locate
ndhG gene − 118484 119014 531 Locate
ndhI gene − 119363 119869 507 Locate
ndhA gene − 119945 122129 2185 Locate
ndhH gene − 122131 123366 1236 Locate
rps15 gene − 123409 123744 336 Locate
ycf1 gene − 124063 129765 5703 Locate
trnN-GUU gene + 129984 130055 72 Locate
trnR-ACG gene − 130625 130698 74 Locate
rrn5 gene − 130942 131062 121 Locate
rrn4.5 gene − 131318 131420 103 Locate
rrn23 gene − 131520 134328 2809 Locate
trnA-UGC gene − 134497 135381 885 Locate
trnI-GAU gene − 135446 136466 1021 Locate
rrn16 gene − 136765 138255 1491 Locate
trnV-GAC gene − 138501 138572 72 Locate
rps12 gene + 140179 140972 794 Locate
rps7 gene + 141026 141493 468 Locate
ndhB gene + 141768 143979 2212 Locate
trnL-CAA gene + 144527 144607 81 Locate
ycf2 gene − 145198 152058 6861 Locate
trnI-CAU gene + 152157 152230 74 Locate
rpl23 gene + 152396 152677 282 Locate
Status Available
Accession MW149076.1
Length 154,285 bp
GC content 38.1%
Annotated genes 128
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 24 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources