Callicarpa longipes var. mixiensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
ycf1 · OR537888.1 · 1–1,182 bp · −
ycf1 · OR537888.1 · 149,583–154,190 bp · −
trnR-ACG · OR537888.1 · 2,042–2,115 bp · −
rrn5 · OR537888.1 · 2,359–2,479 bp · −
rrn4.5 · OR537888.1 · 2,735–2,837 bp · −
rrn23 · OR537888.1 · 2,935–5,745 bp · −
trnA-UGC · OR537888.1 · 5,906–6,800 bp · −
trnI-GAU · OR537888.1 · 6,865–7,885 bp · −
rrn16 · OR537888.1 · 8,184–9,674 bp · −
trnV-GAC · OR537888.1 · 9,920–9,991 bp · −
rps12 · OR537888.1 · 96,465–96,578 bp · −
ycf15 · OR537888.1 · 16,288–16,536 bp · −
ycf2 · OR537888.1 · 16,618–23,478 bp · −
trnH-GUG · OR537888.1 · 25,706–25,780 bp · −
psbA · OR537888.1 · 26,141–27,199 bp · −
trnK-UUU · OR537888.1 · 27,453–30,024 bp · −
matK · OR537888.1 · 27,759–29,282 bp · −
rps16 · OR537888.1 · 30,892–32,025 bp · −
trnQ-UUG · OR537888.1 · 33,181–33,252 bp · −
trnS-GCU · OR537888.1 · 34,391–34,478 bp · −
atpA · OR537888.1 · 36,319–37,842 bp · −
atpF · OR537888.1 · 37,910–39,156 bp · −
atpH · OR537888.1 · 39,527–39,772 bp · −
atpI · OR537888.1 · 40,781–41,524 bp · −
rps2 · OR537888.1 · 41,755–42,465 bp · −
rpoC · OR537888.1 · 42,682–46,863 bp · −
rpoC1 · OR537888.1 · 47,018–49,849 bp · −
rpoB · OR537888.1 · 49,876–53,088 bp · −
psbM · OR537888.1 · 56,165–56,269 bp · −
trnD-GUC · OR537888.1 · 56,791–56,864 bp · −
trnY-GUA · OR537888.1 · 56,973–57,056 bp · −
trnE-UUC · OR537888.1 · 57,116–57,188 bp · −
trnS-UGA · OR537888.1 · 61,869–61,960 bp · −
trnfM-CAU · OR537888.1 · 62,976–63,049 bp · −
rps14 · OR537888.1 · 63,199–63,501 bp · −
psaB · OR537888.1 · 63,624–65,828 bp · −
psaA · OR537888.1 · 65,854–68,106 bp · −
ycf3 · OR537888.1 · 68,815–70,769 bp · −
rps4 · OR537888.1 · 71,974–72,579 bp · −
trnT-UGU · OR537888.1 · 72,946–73,018 bp · −
ndhJ · OR537888.1 · 75,333–75,809 bp · −
ndhK · OR537888.1 · 75,910–76,587 bp · −
ndhC · OR537888.1 · 76,641–77,003 bp · −
trnV-UAC · OR537888.1 · 78,192–78,844 bp · −
atpE · OR537888.1 · 79,306–79,707 bp · −
atpB · OR537888.1 · 79,704–81,200 bp · −
psbJ · OR537888.1 · 90,808–90,930 bp · −
psbL · OR537888.1 · 91,064–91,180 bp · −
psbF · OR537888.1 · 91,204–91,323 bp · −
psbE · OR537888.1 · 91,338–91,589 bp · −
trnW-CCA · OR537888.1 · 93,027–93,100 bp · −
trnP-UGG · OR537888.1 · 93,262–93,335 bp · −
rpl20 · OR537888.1 · 95,252–95,638 bp · −
rps12 · OR537888.1 · 123,974–124,767 bp · −
clpP · OR537888.1 · 96,736–98,683 bp · −
psbN · OR537888.1 · 101,025–101,156 bp · −
rpoA · OR537888.1 · 104,577–105,590 bp · −
rps11 · OR537888.1 · 105,662–106,078 bp · −
rpl36 · OR537888.1 · 106,180–106,293 bp · −
infA · OR537888.1 · 106,389–106,622 bp · −
rps8 · OR537888.1 · 106,747–107,151 bp · −
rpl14 · OR537888.1 · 107,323–107,691 bp · −
rpl16 · OR537888.1 · 107,818–109,113 bp · −
rps3 · OR537888.1 · 109,256–109,918 bp · −
rpl22 · OR537888.1 · 109,928–110,365 bp · −
rps19 · OR537888.1 · 110,425–110,703 bp · −
rpl2 · OR537888.1 · 110,759–112,250 bp · −
rpl23 · OR537888.1 · 112,269–112,550 bp · −
trnI-CAU · OR537888.1 · 112,716–112,789 bp · −
trnL-CAA · OR537888.1 · 120,339–120,419 bp · −
ndhB · OR537888.1 · 120,967–123,178 bp · −
rps7 · OR537888.1 · 123,453–123,920 bp · −
trnN-GUU · OR537888.1 · 134,894–134,965 bp · −
ndhF · OR537888.1 · 136,243–138,486 bp · −
ndhD · OR537888.1 · 141,366–142,895 bp · −
psaC · OR537888.1 · 142,989–143,234 bp · −
ndhE · OR537888.1 · 143,485–143,790 bp · −
ndhG · OR537888.1 · 144,004–144,534 bp · −
ndhI · OR537888.1 · 144,883–145,389 bp · −
ndhA · OR537888.1 · 145,465–147,649 bp · −
ndhH · OR537888.1 · 147,651–148,886 bp · −
rps15 · OR537888.1 · 148,929–149,201 bp · −
trnN-GUU · OR537888.1 · 1,401–1,472 bp · +
rps12 · OR537888.1 · 11,599–12,392 bp · +
rps7 · OR537888.1 · 12,446–12,913 bp · +
ndhB · OR537888.1 · 13,188–15,399 bp · +
trnL-CAA · OR537888.1 · 15,947–16,027 bp · +
trnI-CAU · OR537888.1 · 23,577–23,650 bp · +
rpl23 · OR537888.1 · 23,816–24,097 bp · +
rpl2 · OR537888.1 · 24,116–25,607 bp · +
psbK · OR537888.1 · 33,586–33,771 bp · +
psbI · OR537888.1 · 34,163–34,273 bp · +
trnG-UCC · OR537888.1 · 35,206–35,966 bp · +
trnR-UCU · OR537888.1 · 36,143–36,214 bp · +
trnC-GCA · OR537888.1 · 54,264–54,334 bp · +
petN · OR537888.1 · 55,166–55,255 bp · +
trnT-GGU · OR537888.1 · 57,745–57,816 bp · +
psbD · OR537888.1 · 59,196–60,257 bp · +
psbC · OR537888.1 · 60,205–61,626 bp · +
psbZ · OR537888.1 · 62,290–62,478 bp · +
trnG-GCC · OR537888.1 · 62,754–62,824 bp · +
trnS-GGA · OR537888.1 · 71,607–71,693 bp · +
trnL-UAA · OR537888.1 · 73,693–74,265 bp · +
trnF-GAA · OR537888.1 · 74,611–74,683 bp · +
trnM-CAU · OR537888.1 · 79,026–79,098 bp · +
rbcL · OR537888.1 · 81,965–83,425 bp · +
accD · OR537888.1 · 84,092–85,585 bp · +
psaI · OR537888.1 · 86,288–86,398 bp · +
ycf4 · OR537888.1 · 86,838–87,392 bp · +
cemA · OR537888.1 · 88,040–88,729 bp · +
petA · OR537888.1 · 88,919–89,881 bp · +
petL · OR537888.1 · 92,521–92,616 bp · +
petG · OR537888.1 · 92,791–92,904 bp · +
psaJ · OR537888.1 · 93,727–93,861 bp · +
rpl33 · OR537888.1 · 94,341–94,541 bp · +
rps18 · OR537888.1 · 94,712–95,017 bp · +
psbB · OR537888.1 · 99,138–100,664 bp · +
psbT · OR537888.1 · 100,857–100,964 bp · +
psbH · OR537888.1 · 101,262–101,483 bp · +
petB · OR537888.1 · 101,608–102,987 bp · +
petD · OR537888.1 · 103,176–104,400 bp · +
ycf2 · OR537888.1 · 112,888–119,748 bp · +
ycf15 · OR537888.1 · 119,881–120,078 bp · +
trnV-GAC · OR537888.1 · 126,375–126,446 bp · +
rrn16 · OR537888.1 · 126,692–128,182 bp · +
trnI-GAU · OR537888.1 · 128,481–129,501 bp · +
trnA-UGC · OR537888.1 · 129,566–130,452 bp · +
rrn23 · OR537888.1 · 130,621–133,429 bp · +
rrn4.5 · OR537888.1 · 133,529–133,631 bp · +
rrn5 · OR537888.1 · 133,887–134,007 bp · +
trnR-ACG · OR537888.1 · 134,251–134,324 bp · +
rpl32 · OR537888.1 · 139,006–139,182 bp · +
trnL-UAG · OR537888.1 · 139,964–140,043 bp · +
ccsA · OR537888.1 · 140,128–141,099 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa longipes var. mixiensis
ANNOTATED PLASTOME
OR537888.1
154,191 bp · 132 genes
Gene function
Other
Transfer RNA
Ribosomal RNA
Ribosomal protein
NADH dehydrogenase
Photosystem II
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
0 38548 77096 115643 154191 bp
Forward strand 5′ → 3′
trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA
ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2 trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
ycf1 gene − 1 1182 1182 Locate
trnN-GUU gene + 1401 1472 72 Locate
trnR-ACG gene − 2042 2115 74 Locate
rrn5 gene − 2359 2479 121 Locate
rrn4.5 gene − 2735 2837 103 Locate
rrn23 gene − 2935 5745 2811 Locate
trnA-UGC gene − 5906 6800 895 Locate
trnI-GAU gene − 6865 7885 1021 Locate
rrn16 gene − 8184 9674 1491 Locate
trnV-GAC gene − 9920 9991 72 Locate
rps12 gene + 11599 12392 794 Locate
rps7 gene + 12446 12913 468 Locate
ndhB gene + 13188 15399 2212 Locate
trnL-CAA gene + 15947 16027 81 Locate
ycf15 gene − 16288 16536 249 Locate
ycf2 gene − 16618 23478 6861 Locate
trnI-CAU gene + 23577 23650 74 Locate
rpl23 gene + 23816 24097 282 Locate
rpl2 gene + 24116 25607 1492 Locate
trnH-GUG gene − 25706 25780 75 Locate
psbA gene − 26141 27199 1059 Locate
trnK-UUU gene − 27453 30024 2572 Locate
matK gene − 27759 29282 1524 Locate
rps16 gene − 30892 32025 1134 Locate
trnQ-UUG gene − 33181 33252 72 Locate
psbK gene + 33586 33771 186 Locate
psbI gene + 34163 34273 111 Locate
trnS-GCU gene − 34391 34478 88 Locate
trnG-UCC gene + 35206 35966 761 Locate
trnR-UCU gene + 36143 36214 72 Locate
atpA gene − 36319 37842 1524 Locate
atpF gene − 37910 39156 1247 Locate
atpH gene − 39527 39772 246 Locate
atpI gene − 40781 41524 744 Locate
rps2 gene − 41755 42465 711 Locate
rpoC gene − 42682 46863 4182 Locate
rpoC1 gene − 47018 49849 2832 Locate
rpoB gene − 49876 53088 3213 Locate
trnC-GCA gene + 54264 54334 71 Locate
petN gene + 55166 55255 90 Locate
psbM gene − 56165 56269 105 Locate
trnD-GUC gene − 56791 56864 74 Locate
trnY-GUA gene − 56973 57056 84 Locate
trnE-UUC gene − 57116 57188 73 Locate
trnT-GGU gene + 57745 57816 72 Locate
psbD gene + 59196 60257 1062 Locate
psbC gene + 60205 61626 1422 Locate
trnS-UGA gene − 61869 61960 92 Locate
psbZ gene + 62290 62478 189 Locate
trnG-GCC gene + 62754 62824 71 Locate
trnfM-CAU gene − 62976 63049 74 Locate
rps14 gene − 63199 63501 303 Locate
psaB gene − 63624 65828 2205 Locate
psaA gene − 65854 68106 2253 Locate
ycf3 gene − 68815 70769 1955 Locate
trnS-GGA gene + 71607 71693 87 Locate
rps4 gene − 71974 72579 606 Locate
trnT-UGU gene − 72946 73018 73 Locate
trnL-UAA gene + 73693 74265 573 Locate
trnF-GAA gene + 74611 74683 73 Locate
ndhJ gene − 75333 75809 477 Locate
ndhK gene − 75910 76587 678 Locate
ndhC gene − 76641 77003 363 Locate
trnV-UAC gene − 78192 78844 653 Locate
trnM-CAU gene + 79026 79098 73 Locate
atpE gene − 79306 79707 402 Locate
atpB gene − 79704 81200 1497 Locate
rbcL gene + 81965 83425 1461 Locate
accD gene + 84092 85585 1494 Locate
psaI gene + 86288 86398 111 Locate
ycf4 gene + 86838 87392 555 Locate
cemA gene + 88040 88729 690 Locate
petA gene + 88919 89881 963 Locate
psbJ gene − 90808 90930 123 Locate
psbL gene − 91064 91180 117 Locate
psbF gene − 91204 91323 120 Locate
psbE gene − 91338 91589 252 Locate
petL gene + 92521 92616 96 Locate
petG gene + 92791 92904 114 Locate
trnW-CCA gene − 93027 93100 74 Locate
trnP-UGG gene − 93262 93335 74 Locate
psaJ gene + 93727 93861 135 Locate
rpl33 gene + 94341 94541 201 Locate
rps18 gene + 94712 95017 306 Locate
rpl20 gene − 95252 95638 387 Locate
rps12 gene − 96465 96578 114 Locate
clpP gene − 96736 98683 1948 Locate
psbB gene + 99138 100664 1527 Locate
psbT gene + 100857 100964 108 Locate
psbN gene − 101025 101156 132 Locate
psbH gene + 101262 101483 222 Locate
petB gene + 101608 102987 1380 Locate
petD gene + 103176 104400 1225 Locate
rpoA gene − 104577 105590 1014 Locate
rps11 gene − 105662 106078 417 Locate
rpl36 gene − 106180 106293 114 Locate
infA gene − 106389 106622 234 Locate
rps8 gene − 106747 107151 405 Locate
rpl14 gene − 107323 107691 369 Locate
rpl16 gene − 107818 109113 1296 Locate
rps3 gene − 109256 109918 663 Locate
rpl22 gene − 109928 110365 438 Locate
rps19 gene − 110425 110703 279 Locate
rpl2 gene − 110759 112250 1492 Locate
rpl23 gene − 112269 112550 282 Locate
trnI-CAU gene − 112716 112789 74 Locate
ycf2 gene + 112888 119748 6861 Locate
ycf15 gene + 119881 120078 198 Locate
trnL-CAA gene − 120339 120419 81 Locate
ndhB gene − 120967 123178 2212 Locate
rps7 gene − 123453 123920 468 Locate
rps12 gene − 123974 124767 794 Locate
trnV-GAC gene + 126375 126446 72 Locate
rrn16 gene + 126692 128182 1491 Locate
trnI-GAU gene + 128481 129501 1021 Locate
trnA-UGC gene + 129566 130452 887 Locate
rrn23 gene + 130621 133429 2809 Locate
rrn4.5 gene + 133529 133631 103 Locate
rrn5 gene + 133887 134007 121 Locate
trnR-ACG gene + 134251 134324 74 Locate
trnN-GUU gene − 134894 134965 72 Locate
ndhF gene − 136243 138486 2244 Locate
rpl32 gene + 139006 139182 177 Locate
trnL-UAG gene + 139964 140043 80 Locate
ccsA gene + 140128 141099 972 Locate
ndhD gene − 141366 142895 1530 Locate
psaC gene − 142989 143234 246 Locate
ndhE gene − 143485 143790 306 Locate
ndhG gene − 144004 144534 531 Locate
ndhI gene − 144883 145389 507 Locate
ndhA gene − 145465 147649 2185 Locate
ndhH gene − 147651 148886 1236 Locate
rps15 gene − 148929 149201 273 Locate
ycf1 gene − 149583 154190 4608 Locate
Status Available
Accession OR537888.1
Length 154,191 bp
GC content 38.1%
Annotated genes 132
Gene sequence records 8
Other 15 Translation Rna 37 Ribosomal Rna 8 Ribosomal Protein 26 Nad Dehydrogenase 12 Photosystem Ii 15 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources