Callicarpa longipes chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
ycf1 · OR548044.1 · 1–1,182 bp · −
ycf1 · OR548044.1 · 149,714–154,195 bp · −
trnR-ACG · OR548044.1 · 2,042–2,115 bp · −
rrn5 · OR548044.1 · 2,359–2,479 bp · −
rrn4.5 · OR548044.1 · 2,735–2,837 bp · −
rrn23 · OR548044.1 · 2,935–5,745 bp · −
trnA-UGC · OR548044.1 · 5,906–6,799 bp · −
trnI-GAU · OR548044.1 · 6,864–7,884 bp · −
rrn16 · OR548044.1 · 8,183–9,673 bp · −
trnV-GAC · OR548044.1 · 9,919–9,990 bp · −
ycf15 · OR548044.1 · 16,287–16,535 bp · −
ycf2 · OR548044.1 · 16,617–23,477 bp · −
trnH-GUG · OR548044.1 · 25,705–25,779 bp · −
psbA · OR548044.1 · 26,135–27,193 bp · −
trnK-UUU · OR548044.1 · 27,447–30,018 bp · −
matK · OR548044.1 · 27,753–29,276 bp · −
rps16 · OR548044.1 · 30,885–32,015 bp · −
trnQ-UUG · OR548044.1 · 33,171–33,242 bp · −
trnS-GCU · OR548044.1 · 34,378–34,465 bp · −
atpA · OR548044.1 · 36,306–37,829 bp · −
atpF · OR548044.1 · 37,897–39,143 bp · −
atpH · OR548044.1 · 39,514–39,759 bp · −
atpI · OR548044.1 · 40,768–41,511 bp · −
rps2 · OR548044.1 · 41,742–42,452 bp · −
rpoC · OR548044.1 · 42,669–46,850 bp · −
rpoC1 · OR548044.1 · 47,005–49,830 bp · −
rpoB · OR548044.1 · 49,857–53,069 bp · −
psbM · OR548044.1 · 56,172–56,276 bp · −
trnD-GUC · OR548044.1 · 56,798–56,871 bp · −
trnY-GUA · OR548044.1 · 56,980–57,063 bp · −
trnE-UUC · OR548044.1 · 57,123–57,195 bp · −
trnS-UGA · OR548044.1 · 61,875–61,967 bp · −
trnfM-CAU · OR548044.1 · 62,983–63,056 bp · −
rps14 · OR548044.1 · 63,206–63,508 bp · −
psaB · OR548044.1 · 63,631–65,835 bp · −
psaA · OR548044.1 · 65,861–68,113 bp · −
ycf3 · OR548044.1 · 68,822–70,776 bp · −
rps4 · OR548044.1 · 71,979–72,584 bp · −
trnT-UGU · OR548044.1 · 72,950–73,022 bp · −
ndhJ · OR548044.1 · 75,337–75,813 bp · −
ndhK · OR548044.1 · 75,914–76,591 bp · −
ndhC · OR548044.1 · 76,645–77,007 bp · −
trnV-UAC · OR548044.1 · 78,196–78,848 bp · −
atpE · OR548044.1 · 79,310–79,711 bp · −
atpB · OR548044.1 · 79,708–81,204 bp · −
psbJ · OR548044.1 · 90,812–90,934 bp · −
psbL · OR548044.1 · 91,068–91,184 bp · −
psbF · OR548044.1 · 91,208–91,327 bp · −
psbE · OR548044.1 · 91,342–91,593 bp · −
trnW-CCA · OR548044.1 · 93,031–93,104 bp · −
trnP-UGG · OR548044.1 · 93,266–93,339 bp · −
rpl20 · OR548044.1 · 95,256–95,642 bp · −
rps12 · OR548044.1 · 96,457–96,582 bp · −
rps12 · OR548044.1 · 123,979–124,772 bp · −
clpP · OR548044.1 · 96,741–98,689 bp · −
psbN · OR548044.1 · 101,030–101,161 bp · −
rpoA · OR548044.1 · 104,582–105,595 bp · −
rps11 · OR548044.1 · 105,667–106,083 bp · −
rpl36 · OR548044.1 · 106,185–106,298 bp · −
infA · OR548044.1 · 106,394–106,627 bp · −
rps8 · OR548044.1 · 106,752–107,156 bp · −
rpl14 · OR548044.1 · 107,328–107,696 bp · −
rpl16 · OR548044.1 · 107,823–109,118 bp · −
rps3 · OR548044.1 · 109,261–109,923 bp · −
rpl22 · OR548044.1 · 109,933–110,370 bp · −
rps19 · OR548044.1 · 110,430–110,708 bp · −
rpl2 · OR548044.1 · 110,764–112,255 bp · −
rpl23 · OR548044.1 · 112,274–112,555 bp · −
trnI-CAU · OR548044.1 · 112,721–112,794 bp · −
trnL-CAA · OR548044.1 · 120,344–120,424 bp · −
ndhB · OR548044.1 · 120,972–123,183 bp · −
rps7 · OR548044.1 · 123,458–123,925 bp · −
trnN-GUU · OR548044.1 · 134,898–134,969 bp · −
ndhF · OR548044.1 · 136,374–138,617 bp · −
ndhD · OR548044.1 · 141,497–143,026 bp · −
psaC · OR548044.1 · 143,120–143,365 bp · −
ndhE · OR548044.1 · 143,616–143,921 bp · −
ndhG · OR548044.1 · 144,135–144,665 bp · −
ndhI · OR548044.1 · 145,014–145,520 bp · −
ndhA · OR548044.1 · 145,596–147,780 bp · −
ndhH · OR548044.1 · 147,782–149,017 bp · −
rps15 · OR548044.1 · 149,060–149,332 bp · −
trnN-GUU · OR548044.1 · 1,401–1,472 bp · +
rps7 · OR548044.1 · 12,445–12,912 bp · +
ndhB · OR548044.1 · 13,187–15,398 bp · +
trnL-CAA · OR548044.1 · 15,946–16,026 bp · +
trnI-CAU · OR548044.1 · 23,576–23,649 bp · +
rpl23 · OR548044.1 · 23,815–24,096 bp · +
rpl2 · OR548044.1 · 24,115–25,606 bp · +
psbK · OR548044.1 · 33,572–33,757 bp · +
psbI · OR548044.1 · 34,150–34,260 bp · +
trnG-UCC · OR548044.1 · 35,193–35,953 bp · +
trnR-UCU · OR548044.1 · 36,130–36,201 bp · +
trnC-GCA · OR548044.1 · 54,245–54,315 bp · +
petN · OR548044.1 · 55,147–55,236 bp · +
trnT-GGU · OR548044.1 · 57,752–57,823 bp · +
psbD · OR548044.1 · 59,203–60,264 bp · +
psbC · OR548044.1 · 60,212–61,633 bp · +
psbZ · OR548044.1 · 62,297–62,485 bp · +
trnG-GCC · OR548044.1 · 62,761–62,831 bp · +
trnS-GGA · OR548044.1 · 71,612–71,698 bp · +
trnL-UAA · OR548044.1 · 73,697–74,269 bp · +
trnF-GAA · OR548044.1 · 74,615–74,687 bp · +
trnM-CAU · OR548044.1 · 79,030–79,102 bp · +
rbcL · OR548044.1 · 81,990–83,429 bp · +
accD · OR548044.1 · 84,096–85,589 bp · +
psaI · OR548044.1 · 86,292–86,402 bp · +
ycf4 · OR548044.1 · 86,842–87,396 bp · +
cemA · OR548044.1 · 88,044–88,733 bp · +
petA · OR548044.1 · 88,923–89,885 bp · +
petL · OR548044.1 · 92,525–92,620 bp · +
petG · OR548044.1 · 92,795–92,908 bp · +
psaJ · OR548044.1 · 93,731–93,865 bp · +
rpl33 · OR548044.1 · 94,345–94,545 bp · +
rps18 · OR548044.1 · 94,716–95,021 bp · +
psbB · OR548044.1 · 99,144–100,670 bp · +
psbT · OR548044.1 · 100,862–100,969 bp · +
psbH · OR548044.1 · 101,267–101,488 bp · +
petB · OR548044.1 · 101,613–102,992 bp · +
petD · OR548044.1 · 103,181–104,405 bp · +
ycf2 · OR548044.1 · 112,893–119,753 bp · +
ycf15 · OR548044.1 · 119,886–120,083 bp · +
trnV-GAC · OR548044.1 · 126,380–126,451 bp · +
rrn16 · OR548044.1 · 126,697–128,187 bp · +
trnI-GAU · OR548044.1 · 128,486–129,506 bp · +
trnA-UGC · OR548044.1 · 129,571–130,456 bp · +
rrn23 · OR548044.1 · 130,625–133,433 bp · +
rrn4.5 · OR548044.1 · 133,533–133,635 bp · +
rrn5 · OR548044.1 · 133,891–134,011 bp · +
trnR-ACG · OR548044.1 · 134,255–134,328 bp · +
rpl32 · OR548044.1 · 139,136–139,312 bp · +
trnL-UAG · OR548044.1 · 140,095–140,174 bp · +
ccsA · OR548044.1 · 140,259–141,230 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa longipes
ANNOTATED PLASTOME
OR548044.1
154,195 bp · 131 genes
Gene function
Other
Transfer RNA
Ribosomal RNA
Ribosomal protein
NADH dehydrogenase
Photosystem II
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
0 38549 77098 115646 154195 bp
Forward strand 5′ → 3′
trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA
ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2 trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
ycf1 gene − 1 1182 1182 Locate
trnN-GUU gene + 1401 1472 72 Locate
trnR-ACG gene − 2042 2115 74 Locate
rrn5 gene − 2359 2479 121 Locate
rrn4.5 gene − 2735 2837 103 Locate
rrn23 gene − 2935 5745 2811 Locate
trnA-UGC gene − 5906 6799 894 Locate
trnI-GAU gene − 6864 7884 1021 Locate
rrn16 gene − 8183 9673 1491 Locate
trnV-GAC gene − 9919 9990 72 Locate
rps7 gene + 12445 12912 468 Locate
ndhB gene + 13187 15398 2212 Locate
trnL-CAA gene + 15946 16026 81 Locate
ycf15 gene − 16287 16535 249 Locate
ycf2 gene − 16617 23477 6861 Locate
trnI-CAU gene + 23576 23649 74 Locate
rpl23 gene + 23815 24096 282 Locate
rpl2 gene + 24115 25606 1492 Locate
trnH-GUG gene − 25705 25779 75 Locate
psbA gene − 26135 27193 1059 Locate
trnK-UUU gene − 27447 30018 2572 Locate
matK gene − 27753 29276 1524 Locate
rps16 gene − 30885 32015 1131 Locate
trnQ-UUG gene − 33171 33242 72 Locate
psbK gene + 33572 33757 186 Locate
psbI gene + 34150 34260 111 Locate
trnS-GCU gene − 34378 34465 88 Locate
trnG-UCC gene + 35193 35953 761 Locate
trnR-UCU gene + 36130 36201 72 Locate
atpA gene − 36306 37829 1524 Locate
atpF gene − 37897 39143 1247 Locate
atpH gene − 39514 39759 246 Locate
atpI gene − 40768 41511 744 Locate
rps2 gene − 41742 42452 711 Locate
rpoC gene − 42669 46850 4182 Locate
rpoC1 gene − 47005 49830 2826 Locate
rpoB gene − 49857 53069 3213 Locate
trnC-GCA gene + 54245 54315 71 Locate
petN gene + 55147 55236 90 Locate
psbM gene − 56172 56276 105 Locate
trnD-GUC gene − 56798 56871 74 Locate
trnY-GUA gene − 56980 57063 84 Locate
trnE-UUC gene − 57123 57195 73 Locate
trnT-GGU gene + 57752 57823 72 Locate
psbD gene + 59203 60264 1062 Locate
psbC gene + 60212 61633 1422 Locate
trnS-UGA gene − 61875 61967 93 Locate
psbZ gene + 62297 62485 189 Locate
trnG-GCC gene + 62761 62831 71 Locate
trnfM-CAU gene − 62983 63056 74 Locate
rps14 gene − 63206 63508 303 Locate
psaB gene − 63631 65835 2205 Locate
psaA gene − 65861 68113 2253 Locate
ycf3 gene − 68822 70776 1955 Locate
trnS-GGA gene + 71612 71698 87 Locate
rps4 gene − 71979 72584 606 Locate
trnT-UGU gene − 72950 73022 73 Locate
trnL-UAA gene + 73697 74269 573 Locate
trnF-GAA gene + 74615 74687 73 Locate
ndhJ gene − 75337 75813 477 Locate
ndhK gene − 75914 76591 678 Locate
ndhC gene − 76645 77007 363 Locate
trnV-UAC gene − 78196 78848 653 Locate
trnM-CAU gene + 79030 79102 73 Locate
atpE gene − 79310 79711 402 Locate
atpB gene − 79708 81204 1497 Locate
rbcL gene + 81990 83429 1440 Locate
accD gene + 84096 85589 1494 Locate
psaI gene + 86292 86402 111 Locate
ycf4 gene + 86842 87396 555 Locate
cemA gene + 88044 88733 690 Locate
petA gene + 88923 89885 963 Locate
psbJ gene − 90812 90934 123 Locate
psbL gene − 91068 91184 117 Locate
psbF gene − 91208 91327 120 Locate
psbE gene − 91342 91593 252 Locate
petL gene + 92525 92620 96 Locate
petG gene + 92795 92908 114 Locate
trnW-CCA gene − 93031 93104 74 Locate
trnP-UGG gene − 93266 93339 74 Locate
psaJ gene + 93731 93865 135 Locate
rpl33 gene + 94345 94545 201 Locate
rps18 gene + 94716 95021 306 Locate
rpl20 gene − 95256 95642 387 Locate
rps12 gene − 96457 96582 126 Locate
clpP gene − 96741 98689 1949 Locate
psbB gene + 99144 100670 1527 Locate
psbT gene + 100862 100969 108 Locate
psbN gene − 101030 101161 132 Locate
psbH gene + 101267 101488 222 Locate
petB gene + 101613 102992 1380 Locate
petD gene + 103181 104405 1225 Locate
rpoA gene − 104582 105595 1014 Locate
rps11 gene − 105667 106083 417 Locate
rpl36 gene − 106185 106298 114 Locate
infA gene − 106394 106627 234 Locate
rps8 gene − 106752 107156 405 Locate
rpl14 gene − 107328 107696 369 Locate
rpl16 gene − 107823 109118 1296 Locate
rps3 gene − 109261 109923 663 Locate
rpl22 gene − 109933 110370 438 Locate
rps19 gene − 110430 110708 279 Locate
rpl2 gene − 110764 112255 1492 Locate
rpl23 gene − 112274 112555 282 Locate
trnI-CAU gene − 112721 112794 74 Locate
ycf2 gene + 112893 119753 6861 Locate
ycf15 gene + 119886 120083 198 Locate
trnL-CAA gene − 120344 120424 81 Locate
ndhB gene − 120972 123183 2212 Locate
rps7 gene − 123458 123925 468 Locate
rps12 gene − 123979 124772 794 Locate
trnV-GAC gene + 126380 126451 72 Locate
rrn16 gene + 126697 128187 1491 Locate
trnI-GAU gene + 128486 129506 1021 Locate
trnA-UGC gene + 129571 130456 886 Locate
rrn23 gene + 130625 133433 2809 Locate
rrn4.5 gene + 133533 133635 103 Locate
rrn5 gene + 133891 134011 121 Locate
trnR-ACG gene + 134255 134328 74 Locate
trnN-GUU gene − 134898 134969 72 Locate
ndhF gene − 136374 138617 2244 Locate
rpl32 gene + 139136 139312 177 Locate
trnL-UAG gene + 140095 140174 80 Locate
ccsA gene + 140259 141230 972 Locate
ndhD gene − 141497 143026 1530 Locate
psaC gene − 143120 143365 246 Locate
ndhE gene − 143616 143921 306 Locate
ndhG gene − 144135 144665 531 Locate
ndhI gene − 145014 145520 507 Locate
ndhA gene − 145596 147780 2185 Locate
ndhH gene − 147782 149017 1236 Locate
rps15 gene − 149060 149332 273 Locate
ycf1 gene − 149714 154195 4482 Locate
Status Available
Accession OR548044.1
Length 154,195 bp
GC content 38.1%
Annotated genes 131
Gene sequence records 8
Other 15 Translation Rna 37 Ribosomal Rna 8 Ribosomal Protein 25 Nad Dehydrogenase 12 Photosystem Ii 15 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources