Callicarpa macrophylla chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
trnH-GUG · NC_058323.1 · 4–78 bp · −
psbA · NC_058323.1 · 433–1,491 bp · −
trnK-UUU · NC_058323.1 · 1,745–4,316 bp · −
matK · NC_058323.1 · 2,051–3,574 bp · −
rps16 · NC_058323.1 · 5,179–6,312 bp · −
trnQ-UUG · NC_058323.1 · 7,454–7,525 bp · −
trnS-GCU · NC_058323.1 · 8,662–8,749 bp · −
atpA · NC_058323.1 · 10,570–12,093 bp · −
atpF · NC_058323.1 · 12,161–13,407 bp · −
atpH · NC_058323.1 · 13,776–14,021 bp · −
atpI · NC_058323.1 · 15,036–15,779 bp · −
rps2 · NC_058323.1 · 16,010–16,720 bp · −
rpoC · NC_058323.1 · 16,937–21,118 bp · −
rpoC1 · NC_058323.1 · 21,273–24,098 bp · −
rpoB · NC_058323.1 · 24,125–27,313 bp · −
psbM · NC_058323.1 · 30,404–30,508 bp · −
trnD-GUC · NC_058323.1 · 31,045–31,118 bp · −
trnY-GUA · NC_058323.1 · 31,227–31,310 bp · −
trnE-UUC · NC_058323.1 · 31,370–31,442 bp · −
trnS-UGA · NC_058323.1 · 36,122–36,214 bp · −
trnfM-CAU · NC_058323.1 · 37,230–37,303 bp · −
rps14 · NC_058323.1 · 37,453–37,755 bp · −
psaB · NC_058323.1 · 37,879–40,083 bp · −
psaA · NC_058323.1 · 40,109–42,361 bp · −
ycf3 · NC_058323.1 · 43,076–45,029 bp · −
rps4 · NC_058323.1 · 46,231–46,836 bp · −
trnT-UGU · NC_058323.1 · 47,204–47,276 bp · −
ndhJ · NC_058323.1 · 49,586–50,062 bp · −
ndhK · NC_058323.1 · 50,163–50,840 bp · −
ndhC · NC_058323.1 · 50,894–51,256 bp · −
trnV-UAC · NC_058323.1 · 52,440–53,092 bp · −
atpE · NC_058323.1 · 53,554–53,955 bp · −
atpB · NC_058323.1 · 53,952–55,454 bp · −
psbJ · NC_058323.1 · 65,083–65,205 bp · −
psbL · NC_058323.1 · 65,339–65,455 bp · −
psbF · NC_058323.1 · 65,479–65,598 bp · −
psbE · NC_058323.1 · 65,613–65,864 bp · −
trnW-CCA · NC_058323.1 · 67,304–67,377 bp · −
trnP-UGG · NC_058323.1 · 67,540–67,613 bp · −
rpl20 · NC_058323.1 · 69,531–69,917 bp · −
rps12 · NC_058323.1 · 70,737–70,850 bp · −
rps12 · NC_058323.1 · 98,219–99,012 bp · −
clpP · NC_058323.1 · 70,983–72,930 bp · −
psbN · NC_058323.1 · 75,279–75,410 bp · −
rpoA · NC_058323.1 · 78,820–79,833 bp · −
rps11 · NC_058323.1 · 79,905–80,321 bp · −
rpl36 · NC_058323.1 · 80,423–80,536 bp · −
infA · NC_058323.1 · 80,632–80,865 bp · −
rps8 · NC_058323.1 · 80,990–81,394 bp · −
rpl14 · NC_058323.1 · 81,567–81,935 bp · −
rpl16 · NC_058323.1 · 82,062–83,358 bp · −
rps3 · NC_058323.1 · 83,501–84,163 bp · −
rpl22 · NC_058323.1 · 84,173–84,610 bp · −
rps19 · NC_058323.1 · 84,670–84,948 bp · −
rpl2 · NC_058323.1 · 85,004–86,495 bp · −
rpl23 · NC_058323.1 · 86,514–86,795 bp · −
trnI-CAU · NC_058323.1 · 86,961–87,034 bp · −
trnL-CAA · NC_058323.1 · 94,584–94,664 bp · −
ndhB · NC_058323.1 · 96,647–97,423 bp · −
ndhB · NC_058323.1 · 95,212–95,967 bp · −
ndhB · NC_058323.1 · 95,212–97,424 bp · −
rps7 · NC_058323.1 · 97,698–98,165 bp · −
trnN-GUU · NC_058323.1 · 109,138–109,209 bp · −
ndhF · NC_058323.1 · 110,614–112,857 bp · −
ndhD · NC_058323.1 · 115,737–117,272 bp · −
psaC · NC_058323.1 · 117,360–117,605 bp · −
ndhE · NC_058323.1 · 117,856–118,161 bp · −
ndhG · NC_058323.1 · 118,375–118,905 bp · −
ndhI · NC_058323.1 · 119,254–119,760 bp · −
ndhA · NC_058323.1 · 119,836–122,021 bp · −
ndhH · NC_058323.1 · 122,023–123,204 bp · −
rps15 · NC_058323.1 · 123,301–123,573 bp · −
ycf1 · NC_058323.1 · 123,955–129,630 bp · −
trnR-ACG · NC_058323.1 · 130,490–130,563 bp · −
rrn5 · NC_058323.1 · 130,807–130,927 bp · −
rrn4.5 · NC_058323.1 · 131,183–131,285 bp · −
rrn23 · NC_058323.1 · 131,383–134,193 bp · −
trnA-UGC · NC_058323.1 · 134,362–135,248 bp · −
trnI-GAU · NC_058323.1 · 135,313–136,333 bp · −
rrn16 · NC_058323.1 · 136,632–138,122 bp · −
trnV-GAC · NC_058323.1 · 138,368–138,439 bp · −
ycf15 · NC_058323.1 · 144,735–144,983 bp · −
ycf2 · NC_058323.1 · 145,065–151,925 bp · −
psbK · NC_058323.1 · 7,850–8,044 bp · +
psbI · NC_058323.1 · 8,435–8,545 bp · +
trnG-UCC · NC_058323.1 · 9,457–10,217 bp · +
trnR-UCU · NC_058323.1 · 10,394–10,465 bp · +
trnC-GCA · NC_058323.1 · 28,513–28,583 bp · +
petN · NC_058323.1 · 29,415–29,504 bp · +
trnT-GGU · NC_058323.1 · 31,999–32,070 bp · +
psbD · NC_058323.1 · 33,450–34,511 bp · +
psbC · NC_058323.1 · 34,459–35,880 bp · +
psbZ · NC_058323.1 · 36,544–36,732 bp · +
trnG-GCC · NC_058323.1 · 37,008–37,078 bp · +
trnS-GGA · NC_058323.1 · 45,864–45,950 bp · +
trnL-UAA · NC_058323.1 · 47,949–48,526 bp · +
trnF-GAA · NC_058323.1 · 48,863–48,945 bp · +
trnM-CAU · NC_058323.1 · 53,274–53,346 bp · +
rbcL · NC_058323.1 · 56,233–57,672 bp · +
accD · NC_058323.1 · 58,307–59,851 bp · +
psaI · NC_058323.1 · 60,553–60,663 bp · +
ycf4 · NC_058323.1 · 61,102–61,656 bp · +
cemA · NC_058323.1 · 62,304–62,993 bp · +
petA · NC_058323.1 · 63,183–64,145 bp · +
petL · NC_058323.1 · 66,797–66,892 bp · +
petG · NC_058323.1 · 67,068–67,181 bp · +
psaJ · NC_058323.1 · 68,005–68,139 bp · +
rpl33 · NC_058323.1 · 68,619–68,819 bp · +
rps18 · NC_058323.1 · 68,990–69,295 bp · +
rps12 · NC_058323.1 · 140,046–140,839 bp · +
psbB · NC_058323.1 · 73,392–74,918 bp · +
psbT · NC_058323.1 · 75,111–75,218 bp · +
psbH · NC_058323.1 · 75,498–75,737 bp · +
petB · NC_058323.1 · 75,862–77,238 bp · +
petD · NC_058323.1 · 77,427–78,643 bp · +
ycf2 · NC_058323.1 · 87,133–93,993 bp · +
ycf15 · NC_058323.1 · 94,075–94,323 bp · +
trnV-GAC · NC_058323.1 · 100,619–100,690 bp · +
rrn16 · NC_058323.1 · 100,936–102,426 bp · +
trnI-GAU · NC_058323.1 · 102,725–103,745 bp · +
trnA-UGC · NC_058323.1 · 103,810–104,696 bp · +
rrn23 · NC_058323.1 · 104,865–107,675 bp · +
rrn4.5 · NC_058323.1 · 107,773–107,875 bp · +
rrn5 · NC_058323.1 · 108,131–108,251 bp · +
trnR-ACG · NC_058323.1 · 108,495–108,568 bp · +
ycf1 · NC_058323.1 · 109,539–110,624 bp · +
rpl32 · NC_058323.1 · 113,376–113,552 bp · +
trnL-UAG; trnL-CAA · NC_058323.1 · 114,335–114,414 bp · +
ccsA · NC_058323.1 · 114,499–115,470 bp · +
trnN-GUU · NC_058323.1 · 129,849–129,920 bp · +
rps7 · NC_058323.1 · 140,893–141,360 bp · +
ndhB · NC_058323.1 · 141,635–143,846 bp · +
trnL-CAA · NC_058323.1 · 144,394–144,474 bp · +
trnI-CAU · NC_058323.1 · 152,024–152,097 bp · +
rpl23 · NC_058323.1 · 152,263–152,544 bp · +
rpl2 · NC_058323.1 · 152,563–154,054 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa macrophylla
ANNOTATED PLASTOME
NC_058323.1
154,149 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38537 77074 115612 154149 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG; trnL-CAA ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB ndhB ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
136 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 433 1491 1059 Locate
trnK-UUU gene − 1745 4316 2572 Locate
matK gene − 2051 3574 1524 Locate
rps16 gene − 5179 6312 1134 Locate
trnQ-UUG gene − 7454 7525 72 Locate
psbK gene + 7850 8044 195 Locate
psbI gene + 8435 8545 111 Locate
trnS-GCU gene − 8662 8749 88 Locate
trnG-UCC gene + 9457 10217 761 Locate
trnR-UCU gene + 10394 10465 72 Locate
atpA gene − 10570 12093 1524 Locate
atpF gene − 12161 13407 1247 Locate
atpH gene − 13776 14021 246 Locate
atpI gene − 15036 15779 744 Locate
rps2 gene − 16010 16720 711 Locate
rpoC gene − 16937 21118 4182 Locate
rpoC1 gene − 21273 24098 2826 Locate
rpoB gene − 24125 27313 3189 Locate
trnC-GCA gene + 28513 28583 71 Locate
petN gene + 29415 29504 90 Locate
psbM gene − 30404 30508 105 Locate
trnD-GUC gene − 31045 31118 74 Locate
trnY-GUA gene − 31227 31310 84 Locate
trnE-UUC gene − 31370 31442 73 Locate
trnT-GGU gene + 31999 32070 72 Locate
psbD gene + 33450 34511 1062 Locate
psbC gene + 34459 35880 1422 Locate
trnS-UGA gene − 36122 36214 93 Locate
psbZ gene + 36544 36732 189 Locate
trnG-GCC gene + 37008 37078 71 Locate
trnfM-CAU gene − 37230 37303 74 Locate
rps14 gene − 37453 37755 303 Locate
psaB gene − 37879 40083 2205 Locate
psaA gene − 40109 42361 2253 Locate
ycf3 gene − 43076 45029 1954 Locate
trnS-GGA gene + 45864 45950 87 Locate
rps4 gene − 46231 46836 606 Locate
trnT-UGU gene − 47204 47276 73 Locate
trnL-UAA gene + 47949 48526 578 Locate
trnF-GAA gene + 48863 48945 83 Locate
ndhJ gene − 49586 50062 477 Locate
ndhK gene − 50163 50840 678 Locate
ndhC gene − 50894 51256 363 Locate
trnV-UAC gene − 52440 53092 653 Locate
trnM-CAU gene + 53274 53346 73 Locate
atpE gene − 53554 53955 402 Locate
atpB gene − 53952 55454 1503 Locate
rbcL gene + 56233 57672 1440 Locate
accD gene + 58307 59851 1545 Locate
psaI gene + 60553 60663 111 Locate
ycf4 gene + 61102 61656 555 Locate
cemA gene + 62304 62993 690 Locate
petA gene + 63183 64145 963 Locate
psbJ gene − 65083 65205 123 Locate
psbL gene − 65339 65455 117 Locate
psbF gene − 65479 65598 120 Locate
psbE gene − 65613 65864 252 Locate
petL gene + 66797 66892 96 Locate
petG gene + 67068 67181 114 Locate
trnW-CCA gene − 67304 67377 74 Locate
trnP-UGG gene − 67540 67613 74 Locate
psaJ gene + 68005 68139 135 Locate
rpl33 gene + 68619 68819 201 Locate
rps18 gene + 68990 69295 306 Locate
rpl20 gene − 69531 69917 387 Locate
rps12 gene − 70737 70850 114 Locate
clpP gene − 70983 72930 1948 Locate
psbB gene + 73392 74918 1527 Locate
psbT gene + 75111 75218 108 Locate
psbN gene − 75279 75410 132 Locate
psbH gene + 75498 75737 240 Locate
petB gene + 75862 77238 1377 Locate
petD gene + 77427 78643 1217 Locate
rpoA gene − 78820 79833 1014 Locate
rps11 gene − 79905 80321 417 Locate
rpl36 gene − 80423 80536 114 Locate
infA gene − 80632 80865 234 Locate
rps8 gene − 80990 81394 405 Locate
rpl14 gene − 81567 81935 369 Locate
rpl16 gene − 82062 83358 1297 Locate
rps3 gene − 83501 84163 663 Locate
rpl22 gene − 84173 84610 438 Locate
rps19 gene − 84670 84948 279 Locate
rpl2 gene − 85004 86495 1492 Locate
rpl23 gene − 86514 86795 282 Locate
trnI-CAU gene − 86961 87034 74 Locate
ycf2 gene + 87133 93993 6861 Locate
ycf15 gene + 94075 94323 249 Locate
trnL-CAA gene − 94584 94664 81 Locate
ndhB CDS − 95212 95967 756 Locate
ndhB gene − 95212 97424 2213 Locate
ndhB CDS − 96647 97423 777 Locate
rps7 gene − 97698 98165 468 Locate
rps12 gene − 98219 99012 794 Locate
trnV-GAC gene + 100619 100690 72 Locate
rrn16 gene + 100936 102426 1491 Locate
trnI-GAU gene + 102725 103745 1021 Locate
trnA-UGC gene + 103810 104696 887 Locate
rrn23 gene + 104865 107675 2811 Locate
rrn4.5 gene + 107773 107875 103 Locate
rrn5 gene + 108131 108251 121 Locate
trnR-ACG gene + 108495 108568 74 Locate
trnN-GUU gene − 109138 109209 72 Locate
ycf1 gene + 109539 110624 1086 Locate
ndhF gene − 110614 112857 2244 Locate
rpl32 gene + 113376 113552 177 Locate
trnL-UAG; trnL-CAA gene + 114335 114414 80 Locate
ccsA gene + 114499 115470 972 Locate
ndhD gene − 115737 117272 1536 Locate
psaC gene − 117360 117605 246 Locate
ndhE gene − 117856 118161 306 Locate
ndhG gene − 118375 118905 531 Locate
ndhI gene − 119254 119760 507 Locate
ndhA gene − 119836 122021 2186 Locate
ndhH gene − 122023 123204 1182 Locate
rps15 gene − 123301 123573 273 Locate
ycf1 gene − 123955 129630 5676 Locate
trnN-GUU gene + 129849 129920 72 Locate
trnR-ACG gene − 130490 130563 74 Locate
rrn5 gene − 130807 130927 121 Locate
rrn4.5 gene − 131183 131285 103 Locate
rrn23 gene − 131383 134193 2811 Locate
trnA-UGC gene − 134362 135248 887 Locate
trnI-GAU gene − 135313 136333 1021 Locate
rrn16 gene − 136632 138122 1491 Locate
trnV-GAC gene − 138368 138439 72 Locate
rps12 gene + 140046 140839 794 Locate
rps7 gene + 140893 141360 468 Locate
ndhB gene + 141635 143846 2212 Locate
trnL-CAA gene + 144394 144474 81 Locate
ycf15 gene − 144735 144983 249 Locate
ycf2 gene − 145065 151925 6861 Locate
trnI-CAU gene + 152024 152097 74 Locate
rpl23 gene + 152263 152544 282 Locate
rpl2 gene + 152563 154054 1492 Locate
Status Available
Accession NC_058323.1
Length 154,149 bp
GC content 38.1%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 14 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 1
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources