Callicarpa peichieniana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
trnH-GUG · NC_058324.1 · 4–78 bp · −
psbA · NC_058324.1 · 324–1,382 bp · −
trnK-UUU · NC_058324.1 · 1,636–4,207 bp · −
matK · NC_058324.1 · 1,942–3,465 bp · −
rps16 · NC_058324.1 · 5,070–6,203 bp · −
trnQ-UUG · NC_058324.1 · 7,360–7,431 bp · −
trnS-GCU · NC_058324.1 · 8,568–8,655 bp · −
atpA · NC_058324.1 · 10,476–11,999 bp · −
atpF · NC_058324.1 · 12,067–13,313 bp · −
atpH · NC_058324.1 · 13,682–13,927 bp · −
atpI · NC_058324.1 · 14,943–15,686 bp · −
rps2 · NC_058324.1 · 15,917–16,627 bp · −
rpoC · NC_058324.1 · 16,844–21,025 bp · −
rpoC1 · NC_058324.1 · 21,180–24,005 bp · −
rpoB · NC_058324.1 · 24,032–27,220 bp · −
psbM · NC_058324.1 · 30,322–30,426 bp · −
trnD-GUC · NC_058324.1 · 30,963–31,036 bp · −
trnY-GUA · NC_058324.1 · 31,145–31,228 bp · −
trnE-UUC · NC_058324.1 · 31,288–31,360 bp · −
trnS-UGA · NC_058324.1 · 36,040–36,132 bp · −
trnfM-CAU · NC_058324.1 · 37,148–37,221 bp · −
rps14 · NC_058324.1 · 37,371–37,673 bp · −
psaB · NC_058324.1 · 37,796–40,000 bp · −
psaA · NC_058324.1 · 40,026–42,278 bp · −
ycf3 · NC_058324.1 · 42,994–44,948 bp · −
rps4 · NC_058324.1 · 46,150–46,755 bp · −
trnT-UGU · NC_058324.1 · 47,124–47,196 bp · −
ndhJ · NC_058324.1 · 49,509–49,985 bp · −
ndhK · NC_058324.1 · 50,086–50,763 bp · −
ndhC · NC_058324.1 · 50,817–51,179 bp · −
trnV-UAC · NC_058324.1 · 52,369–53,021 bp · −
atpE · NC_058324.1 · 53,483–53,884 bp · −
atpB · NC_058324.1 · 53,881–55,377 bp · −
atpB · NC_058324.1 · 53,881–55,383 bp · −
psbJ · NC_058324.1 · 65,020–65,142 bp · −
psbL · NC_058324.1 · 65,276–65,392 bp · −
psbF · NC_058324.1 · 65,416–65,535 bp · −
psbE · NC_058324.1 · 65,550–65,801 bp · −
trnW-CCA · NC_058324.1 · 67,239–67,312 bp · −
trnP-UGG · NC_058324.1 · 67,477–67,550 bp · −
rpl20 · NC_058324.1 · 69,474–69,860 bp · −
rps12 · NC_058324.1 · 70,682–70,795 bp · −
rps12 · NC_058324.1 · 98,164–98,957 bp · −
clpP · NC_058324.1 · 70,929–72,877 bp · −
psbN · NC_058324.1 · 75,226–75,357 bp · −
rpoA · NC_058324.1 · 78,767–79,780 bp · −
rps11 · NC_058324.1 · 79,852–80,268 bp · −
rpl36 · NC_058324.1 · 80,370–80,483 bp · −
infA · NC_058324.1 · 80,579–80,812 bp · −
rps8 · NC_058324.1 · 80,937–81,341 bp · −
rpl14 · NC_058324.1 · 81,513–81,881 bp · −
rpl16 · NC_058324.1 · 82,008–83,304 bp · −
rps3 · NC_058324.1 · 83,447–84,109 bp · −
rpl22 · NC_058324.1 · 84,119–84,556 bp · −
rps19 · NC_058324.1 · 84,616–84,894 bp · −
rpl2 · NC_058324.1 · 84,949–86,440 bp · −
rpl23 · NC_058324.1 · 86,459–86,740 bp · −
trnI-CAU · NC_058324.1 · 86,906–86,979 bp · −
trnL-CAA · NC_058324.1 · 94,529–94,609 bp · −
ndhB · NC_058324.1 · 96,592–97,368 bp · −
ndhB · NC_058324.1 · 95,157–95,912 bp · −
ndhB · NC_058324.1 · 95,157–97,369 bp · −
rps7 · NC_058324.1 · 97,643–98,110 bp · −
trnN-GUU · NC_058324.1 · 109,084–109,155 bp · −
ndhF · NC_058324.1 · 110,560–112,803 bp · −
ndhD · NC_058324.1 · 115,690–117,225 bp · −
psaC · NC_058324.1 · 117,314–117,559 bp · −
ndhE · NC_058324.1 · 117,810–118,115 bp · −
ndhG · NC_058324.1 · 118,329–118,859 bp · −
ndhI · NC_058324.1 · 119,208–119,714 bp · −
ndhA · NC_058324.1 · 119,790–121,974 bp · −
ndhH · NC_058324.1 · 121,976–123,157 bp · −
rps15 · NC_058324.1 · 123,254–123,526 bp · −
ycf1 · NC_058324.1 · 123,908–129,583 bp · −
trnR-ACG · NC_058324.1 · 130,443–130,516 bp · −
rrn5 · NC_058324.1 · 130,760–130,880 bp · −
rrn4.5 · NC_058324.1 · 131,136–131,238 bp · −
rrn23 · NC_058324.1 · 131,336–134,146 bp · −
trnA-UGC · NC_058324.1 · 134,315–135,202 bp · −
trnI-GAU · NC_058324.1 · 135,267–136,287 bp · −
rrn16 · NC_058324.1 · 136,586–138,076 bp · −
trnV-GAC · NC_058324.1 · 138,322–138,393 bp · −
ycf15 · NC_058324.1 · 144,689–144,937 bp · −
ycf2 · NC_058324.1 · 145,019–151,879 bp · −
psbK · NC_058324.1 · 7,756–7,950 bp · +
psbI · NC_058324.1 · 8,340–8,450 bp · +
trnG-UCC · NC_058324.1 · 9,363–10,123 bp · +
trnR-UCU · NC_058324.1 · 10,300–10,371 bp · +
trnC-GCA · NC_058324.1 · 28,420–28,490 bp · +
petN · NC_058324.1 · 29,323–29,412 bp · +
trnT-GGU · NC_058324.1 · 31,917–31,988 bp · +
psbD · NC_058324.1 · 33,368–34,429 bp · +
psbC · NC_058324.1 · 34,377–35,798 bp · +
psbZ · NC_058324.1 · 36,462–36,650 bp · +
trnG-GCC · NC_058324.1 · 36,926–36,996 bp · +
trnS-GGA · NC_058324.1 · 45,783–45,869 bp · +
trnL-UAA · NC_058324.1 · 47,869–48,446 bp · +
trnF-GAA · NC_058324.1 · 48,783–48,870 bp · +
trnM-CAU · NC_058324.1 · 53,203–53,275 bp · +
rbcL · NC_058324.1 · 56,163–57,602 bp · +
accD · NC_058324.1 · 58,246–59,790 bp · +
psaI · NC_058324.1 · 60,492–60,602 bp · +
ycf4 · NC_058324.1 · 61,041–61,595 bp · +
cemA · NC_058324.1 · 62,243–62,932 bp · +
petA · NC_058324.1 · 63,122–64,084 bp · +
petL · NC_058324.1 · 66,733–66,828 bp · +
petG · NC_058324.1 · 67,003–67,116 bp · +
psaJ · NC_058324.1 · 67,942–68,076 bp · +
rpl33 · NC_058324.1 · 68,562–68,762 bp · +
rps18 · NC_058324.1 · 68,933–69,238 bp · +
rps12 · NC_058324.1 · 140,000–140,793 bp · +
psbB · NC_058324.1 · 73,339–74,865 bp · +
psbT · NC_058324.1 · 75,058–75,165 bp · +
psbH · NC_058324.1 · 75,445–75,684 bp · +
petB · NC_058324.1 · 75,809–77,185 bp · +
petD · NC_058324.1 · 77,374–78,590 bp · +
ycf2 · NC_058324.1 · 87,078–93,938 bp · +
ycf15 · NC_058324.1 · 94,020–94,268 bp · +
trnV-GAC · NC_058324.1 · 100,564–100,635 bp · +
rrn16 · NC_058324.1 · 100,881–102,371 bp · +
trnI-GAU · NC_058324.1 · 102,670–103,690 bp · +
trnA-UGC · NC_058324.1 · 103,755–104,642 bp · +
rrn23 · NC_058324.1 · 104,811–107,621 bp · +
rrn4.5 · NC_058324.1 · 107,719–107,821 bp · +
rrn5 · NC_058324.1 · 108,077–108,197 bp · +
trnR-ACG · NC_058324.1 · 108,441–108,514 bp · +
ycf1 · NC_058324.1 · 109,485–110,570 bp · +
rpl32 · NC_058324.1 · 113,322–113,498 bp · +
trnL-UAG; trnL-CAA · NC_058324.1 · 114,288–114,367 bp · +
ccsA · NC_058324.1 · 114,452–115,423 bp · +
trnN-GUU · NC_058324.1 · 129,802–129,873 bp · +
rps7 · NC_058324.1 · 140,847–141,314 bp · +
ndhB · NC_058324.1 · 141,589–143,800 bp · +
trnL-CAA · NC_058324.1 · 144,348–144,428 bp · +
trnI-CAU · NC_058324.1 · 151,978–152,051 bp · +
rpl23 · NC_058324.1 · 152,217–152,498 bp · +
rpl2 · NC_058324.1 · 152,517–154,008 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa peichieniana
ANNOTATED PLASTOME
NC_058324.1
154,102 bp · 135 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38526 77051 115576 154102 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG; trnL-CAA ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB ndhB ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
137 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 324 1382 1059 Locate
trnK-UUU gene − 1636 4207 2572 Locate
matK gene − 1942 3465 1524 Locate
rps16 gene − 5070 6203 1134 Locate
trnQ-UUG gene − 7360 7431 72 Locate
psbK gene + 7756 7950 195 Locate
psbI gene + 8340 8450 111 Locate
trnS-GCU gene − 8568 8655 88 Locate
trnG-UCC gene + 9363 10123 761 Locate
trnR-UCU gene + 10300 10371 72 Locate
atpA gene − 10476 11999 1524 Locate
atpF gene − 12067 13313 1247 Locate
atpH gene − 13682 13927 246 Locate
atpI gene − 14943 15686 744 Locate
rps2 gene − 15917 16627 711 Locate
rpoC gene − 16844 21025 4182 Locate
rpoC1 gene − 21180 24005 2826 Locate
rpoB gene − 24032 27220 3189 Locate
trnC-GCA gene + 28420 28490 71 Locate
petN gene + 29323 29412 90 Locate
psbM gene − 30322 30426 105 Locate
trnD-GUC gene − 30963 31036 74 Locate
trnY-GUA gene − 31145 31228 84 Locate
trnE-UUC gene − 31288 31360 73 Locate
trnT-GGU gene + 31917 31988 72 Locate
psbD gene + 33368 34429 1062 Locate
psbC gene + 34377 35798 1422 Locate
trnS-UGA gene − 36040 36132 93 Locate
psbZ gene + 36462 36650 189 Locate
trnG-GCC gene + 36926 36996 71 Locate
trnfM-CAU gene − 37148 37221 74 Locate
rps14 gene − 37371 37673 303 Locate
psaB gene − 37796 40000 2205 Locate
psaA gene − 40026 42278 2253 Locate
ycf3 gene − 42994 44948 1955 Locate
trnS-GGA gene + 45783 45869 87 Locate
rps4 gene − 46150 46755 606 Locate
trnT-UGU gene − 47124 47196 73 Locate
trnL-UAA gene + 47869 48446 578 Locate
trnF-GAA gene + 48783 48870 88 Locate
ndhJ gene − 49509 49985 477 Locate
ndhK gene − 50086 50763 678 Locate
ndhC gene − 50817 51179 363 Locate
trnV-UAC gene − 52369 53021 653 Locate
trnM-CAU gene + 53203 53275 73 Locate
atpE gene − 53483 53884 402 Locate
atpB CDS − 53881 55377 1497 Locate
atpB gene − 53881 55383 1503 Locate
rbcL gene + 56163 57602 1440 Locate
accD gene + 58246 59790 1545 Locate
psaI gene + 60492 60602 111 Locate
ycf4 gene + 61041 61595 555 Locate
cemA gene + 62243 62932 690 Locate
petA gene + 63122 64084 963 Locate
psbJ gene − 65020 65142 123 Locate
psbL gene − 65276 65392 117 Locate
psbF gene − 65416 65535 120 Locate
psbE gene − 65550 65801 252 Locate
petL gene + 66733 66828 96 Locate
petG gene + 67003 67116 114 Locate
trnW-CCA gene − 67239 67312 74 Locate
trnP-UGG gene − 67477 67550 74 Locate
psaJ gene + 67942 68076 135 Locate
rpl33 gene + 68562 68762 201 Locate
rps18 gene + 68933 69238 306 Locate
rpl20 gene − 69474 69860 387 Locate
rps12 gene − 70682 70795 114 Locate
clpP gene − 70929 72877 1949 Locate
psbB gene + 73339 74865 1527 Locate
psbT gene + 75058 75165 108 Locate
psbN gene − 75226 75357 132 Locate
psbH gene + 75445 75684 240 Locate
petB gene + 75809 77185 1377 Locate
petD gene + 77374 78590 1217 Locate
rpoA gene − 78767 79780 1014 Locate
rps11 gene − 79852 80268 417 Locate
rpl36 gene − 80370 80483 114 Locate
infA gene − 80579 80812 234 Locate
rps8 gene − 80937 81341 405 Locate
rpl14 gene − 81513 81881 369 Locate
rpl16 gene − 82008 83304 1297 Locate
rps3 gene − 83447 84109 663 Locate
rpl22 gene − 84119 84556 438 Locate
rps19 gene − 84616 84894 279 Locate
rpl2 gene − 84949 86440 1492 Locate
rpl23 gene − 86459 86740 282 Locate
trnI-CAU gene − 86906 86979 74 Locate
ycf2 gene + 87078 93938 6861 Locate
ycf15 gene + 94020 94268 249 Locate
trnL-CAA gene − 94529 94609 81 Locate
ndhB CDS − 95157 95912 756 Locate
ndhB gene − 95157 97369 2213 Locate
ndhB CDS − 96592 97368 777 Locate
rps7 gene − 97643 98110 468 Locate
rps12 gene − 98164 98957 794 Locate
trnV-GAC gene + 100564 100635 72 Locate
rrn16 gene + 100881 102371 1491 Locate
trnI-GAU gene + 102670 103690 1021 Locate
trnA-UGC gene + 103755 104642 888 Locate
rrn23 gene + 104811 107621 2811 Locate
rrn4.5 gene + 107719 107821 103 Locate
rrn5 gene + 108077 108197 121 Locate
trnR-ACG gene + 108441 108514 74 Locate
trnN-GUU gene − 109084 109155 72 Locate
ycf1 gene + 109485 110570 1086 Locate
ndhF gene − 110560 112803 2244 Locate
rpl32 gene + 113322 113498 177 Locate
trnL-UAG; trnL-CAA gene + 114288 114367 80 Locate
ccsA gene + 114452 115423 972 Locate
ndhD gene − 115690 117225 1536 Locate
psaC gene − 117314 117559 246 Locate
ndhE gene − 117810 118115 306 Locate
ndhG gene − 118329 118859 531 Locate
ndhI gene − 119208 119714 507 Locate
ndhA gene − 119790 121974 2185 Locate
ndhH gene − 121976 123157 1182 Locate
rps15 gene − 123254 123526 273 Locate
ycf1 gene − 123908 129583 5676 Locate
trnN-GUU gene + 129802 129873 72 Locate
trnR-ACG gene − 130443 130516 74 Locate
rrn5 gene − 130760 130880 121 Locate
rrn4.5 gene − 131136 131238 103 Locate
rrn23 gene − 131336 134146 2811 Locate
trnA-UGC gene − 134315 135202 888 Locate
trnI-GAU gene − 135267 136287 1021 Locate
rrn16 gene − 136586 138076 1491 Locate
trnV-GAC gene − 138322 138393 72 Locate
rps12 gene + 140000 140793 794 Locate
rps7 gene + 140847 141314 468 Locate
ndhB gene + 141589 143800 2212 Locate
trnL-CAA gene + 144348 144428 81 Locate
ycf15 gene − 144689 144937 249 Locate
ycf2 gene − 145019 151879 6861 Locate
trnI-CAU gene + 151978 152051 74 Locate
rpl23 gene + 152217 152498 282 Locate
rpl2 gene + 152517 154008 1492 Locate
Status Available
Accession NC_058324.1
Length 154,102 bp
GC content 38.1%
Annotated genes 135
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 7 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 14 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 1
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources