Callicarpa rubella f. angustata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
ycf1 · OR537890.1 · 1–1,182 bp · −
ycf1 · OR537890.1 · 149,657–154,138 bp · −
trnR-ACG · OR537890.1 · 2,042–2,115 bp · −
rrn5 · OR537890.1 · 2,359–2,479 bp · −
rrn4.5 · OR537890.1 · 2,735–2,837 bp · −
rrn23 · OR537890.1 · 2,935–5,745 bp · −
trnA-UGC · OR537890.1 · 5,914–6,800 bp · −
trnI-GAU · OR537890.1 · 6,865–7,885 bp · −
rrn16 · OR537890.1 · 8,184–9,674 bp · −
trnV-GAC · OR537890.1 · 9,920–9,991 bp · −
rps12 · OR537890.1 · 96,435–96,548 bp · −
ycf15 · OR537890.1 · 16,288–16,536 bp · −
ycf2 · OR537890.1 · 16,618–23,478 bp · −
trnH-GUG · OR537890.1 · 25,706–25,780 bp · −
psbA · OR537890.1 · 26,109–27,167 bp · −
trnK-UUU · OR537890.1 · 27,421–29,992 bp · −
matK · OR537890.1 · 27,727–29,250 bp · −
rps16 · OR537890.1 · 30,857–31,990 bp · −
trnQ-UUG · OR537890.1 · 33,148–33,219 bp · −
trnS-GCU · OR537890.1 · 34,360–34,447 bp · −
atpA · OR537890.1 · 36,268–37,791 bp · −
atpF · OR537890.1 · 37,859–39,105 bp · −
atpH · OR537890.1 · 39,477–39,722 bp · −
atpI · OR537890.1 · 40,731–41,474 bp · −
rps2 · OR537890.1 · 41,705–42,415 bp · −
rpoC · OR537890.1 · 42,632–46,813 bp · −
rpoC1 · OR537890.1 · 46,968–49,793 bp · −
rpoB · OR537890.1 · 49,820–53,032 bp · −
psbM · OR537890.1 · 56,110–56,214 bp · −
trnD-GUC · OR537890.1 · 56,751–56,824 bp · −
trnY-GUA · OR537890.1 · 56,933–57,016 bp · −
trnE-TTC · OR537890.1 · 57,076–57,148 bp · −
trnS-UGA · OR537890.1 · 61,828–61,920 bp · −
trnfM-CAU · OR537890.1 · 62,936–63,009 bp · −
rps14 · OR537890.1 · 63,159–63,461 bp · −
psaB · OR537890.1 · 63,584–65,788 bp · −
psaA · OR537890.1 · 65,814–68,066 bp · −
ycf3 · OR537890.1 · 68,781–70,735 bp · −
rps4 · OR537890.1 · 71,954–72,559 bp · −
trnT-UGU · OR537890.1 · 72,923–72,995 bp · −
ndhJ · OR537890.1 · 75,305–75,781 bp · −
ndhK · OR537890.1 · 75,882–76,559 bp · −
ndhC · OR537890.1 · 76,613–76,975 bp · −
trnV-UAC · OR537890.1 · 78,164–78,817 bp · −
atpE · OR537890.1 · 79,279–79,680 bp · −
atpB · OR537890.1 · 79,677–81,173 bp · −
psbJ · OR537890.1 · 90,791–90,913 bp · −
psbL · OR537890.1 · 91,047–91,163 bp · −
psbF · OR537890.1 · 91,187–91,306 bp · −
psbE · OR537890.1 · 91,321–91,572 bp · −
trnW-CCA · OR537890.1 · 93,002–93,075 bp · −
trnP-UGG · OR537890.1 · 93,237–93,310 bp · −
rpl20 · OR537890.1 · 95,226–95,612 bp · −
rps12 · OR537890.1 · 123,919–124,712 bp · −
clpP · OR537890.1 · 96,682–98,630 bp · −
psbN · OR537890.1 · 100,979–101,110 bp · −
rpoA · OR537890.1 · 104,523–105,536 bp · −
rps11 · OR537890.1 · 105,608–106,024 bp · −
rpl36 · OR537890.1 · 106,126–106,239 bp · −
infA · OR537890.1 · 106,335–106,568 bp · −
rps8 · OR537890.1 · 106,693–107,097 bp · −
rpl14 · OR537890.1 · 107,268–107,636 bp · −
rpl16 · OR537890.1 · 107,763–109,058 bp · −
rps3 · OR537890.1 · 109,201–109,863 bp · −
rpl22 · OR537890.1 · 109,873–110,310 bp · −
rps19 · OR537890.1 · 110,370–110,648 bp · −
rpl2 · OR537890.1 · 110,704–112,195 bp · −
rpl23 · OR537890.1 · 112,214–112,495 bp · −
trnI-CAU · OR537890.1 · 112,661–112,734 bp · −
trnL-CAA · OR537890.1 · 120,284–120,364 bp · −
ndhB · OR537890.1 · 120,912–123,123 bp · −
rps7 · OR537890.1 · 123,398–123,865 bp · −
trnN-GUU · OR537890.1 · 134,839–134,910 bp · −
ndhF · OR537890.1 · 136,315–138,558 bp · −
ndhD · OR537890.1 · 141,437–142,966 bp · −
psaC · OR537890.1 · 143,060–143,305 bp · −
ndhE · OR537890.1 · 143,556–143,861 bp · −
ndhG · OR537890.1 · 144,078–144,608 bp · −
ndhI · OR537890.1 · 144,958–145,464 bp · −
ndhA · OR537890.1 · 145,540–147,724 bp · −
ndhH · OR537890.1 · 147,726–148,961 bp · −
rps15 · OR537890.1 · 149,004–149,276 bp · −
trnN-GUU · OR537890.1 · 1,401–1,472 bp · +
rps12 · OR537890.1 · 11,599–12,392 bp · +
rps7 · OR537890.1 · 12,446–12,913 bp · +
ndhB · OR537890.1 · 13,188–15,399 bp · +
trnL-CAA · OR537890.1 · 15,947–16,027 bp · +
trnI-CAU · OR537890.1 · 23,577–23,650 bp · +
rpl23 · OR537890.1 · 23,816–24,097 bp · +
rpl2 · OR537890.1 · 24,116–25,607 bp · +
psbK · OR537890.1 · 33,553–33,738 bp · +
psbI · OR537890.1 · 34,130–34,240 bp · +
trnG-UCC · OR537890.1 · 35,155–35,915 bp · +
trnR-UCU · OR537890.1 · 36,092–36,163 bp · +
trnC-GCA · OR537890.1 · 54,208–54,278 bp · +
petN · OR537890.1 · 55,110–55,199 bp · +
trnT-GGU · OR537890.1 · 57,705–57,776 bp · +
psbD · OR537890.1 · 59,156–60,217 bp · +
psbC · OR537890.1 · 60,165–61,586 bp · +
psbZ · OR537890.1 · 62,250–62,438 bp · +
trnG-GCC · OR537890.1 · 62,714–62,784 bp · +
trnS-GGA · OR537890.1 · 71,587–71,673 bp · +
trnL-UAA · OR537890.1 · 73,669–74,241 bp · +
trnF-GAA · OR537890.1 · 74,583–74,655 bp · +
trnM-CAU · OR537890.1 · 78,999–79,071 bp · +
rbcL · OR537890.1 · 81,938–83,398 bp · +
accD · OR537890.1 · 84,084–85,577 bp · +
psaI · OR537890.1 · 86,271–86,381 bp · +
ycf4 · OR537890.1 · 86,821–87,375 bp · +
cemA · OR537890.1 · 88,023–88,712 bp · +
petA · OR537890.1 · 88,902–89,864 bp · +
petL · OR537890.1 · 92,496–92,591 bp · +
petG · OR537890.1 · 92,766–92,879 bp · +
psaJ · OR537890.1 · 93,702–93,836 bp · +
rpl33 · OR537890.1 · 94,316–94,516 bp · +
rps18 · OR537890.1 · 94,687–94,992 bp · +
psbB · OR537890.1 · 99,092–100,618 bp · +
psbT · OR537890.1 · 100,811–100,918 bp · +
psbH · OR537890.1 · 101,216–101,437 bp · +
petB · OR537890.1 · 101,562–102,941 bp · +
petD · OR537890.1 · 103,130–104,346 bp · +
ycf2 · OR537890.1 · 112,833–119,693 bp · +
ycf15 · OR537890.1 · 119,826–120,023 bp · +
trnV-GAC · OR537890.1 · 126,320–126,391 bp · +
rrn16 · OR537890.1 · 126,637–128,127 bp · +
trnI-GAU · OR537890.1 · 128,426–129,446 bp · +
trnA-UGC · OR537890.1 · 129,511–130,397 bp · +
rrn23 · OR537890.1 · 130,566–133,376 bp · +
rrn4.5 · OR537890.1 · 133,474–133,576 bp · +
rrn5 · OR537890.1 · 133,832–133,952 bp · +
trnR-ACG · OR537890.1 · 134,196–134,269 bp · +
rpl32 · OR537890.1 · 139,077–139,253 bp · +
trnL-UAG · OR537890.1 · 140,035–140,114 bp · +
ccsA · OR537890.1 · 140,199–141,170 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa rubella f. angustata
ANNOTATED PLASTOME
OR537890.1
154,138 bp · 132 genes
Gene function
Other
Transfer RNA
Ribosomal RNA
Ribosomal protein
NADH dehydrogenase
Photosystem II
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
0 38534 77069 115604 154138 bp
Forward strand 5′ → 3′
trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA
ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2 trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-TTC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
ycf1 gene − 1 1182 1182 Locate
trnN-GUU gene + 1401 1472 72 Locate
trnR-ACG gene − 2042 2115 74 Locate
rrn5 gene − 2359 2479 121 Locate
rrn4.5 gene − 2735 2837 103 Locate
rrn23 gene − 2935 5745 2811 Locate
trnA-UGC gene − 5914 6800 887 Locate
trnI-GAU gene − 6865 7885 1021 Locate
rrn16 gene − 8184 9674 1491 Locate
trnV-GAC gene − 9920 9991 72 Locate
rps12 gene + 11599 12392 794 Locate
rps7 gene + 12446 12913 468 Locate
ndhB gene + 13188 15399 2212 Locate
trnL-CAA gene + 15947 16027 81 Locate
ycf15 gene − 16288 16536 249 Locate
ycf2 gene − 16618 23478 6861 Locate
trnI-CAU gene + 23577 23650 74 Locate
rpl23 gene + 23816 24097 282 Locate
rpl2 gene + 24116 25607 1492 Locate
trnH-GUG gene − 25706 25780 75 Locate
psbA gene − 26109 27167 1059 Locate
trnK-UUU gene − 27421 29992 2572 Locate
matK gene − 27727 29250 1524 Locate
rps16 gene − 30857 31990 1134 Locate
trnQ-UUG gene − 33148 33219 72 Locate
psbK gene + 33553 33738 186 Locate
psbI gene + 34130 34240 111 Locate
trnS-GCU gene − 34360 34447 88 Locate
trnG-UCC gene + 35155 35915 761 Locate
trnR-UCU gene + 36092 36163 72 Locate
atpA gene − 36268 37791 1524 Locate
atpF gene − 37859 39105 1247 Locate
atpH gene − 39477 39722 246 Locate
atpI gene − 40731 41474 744 Locate
rps2 gene − 41705 42415 711 Locate
rpoC gene − 42632 46813 4182 Locate
rpoC1 gene − 46968 49793 2826 Locate
rpoB gene − 49820 53032 3213 Locate
trnC-GCA gene + 54208 54278 71 Locate
petN gene + 55110 55199 90 Locate
psbM gene − 56110 56214 105 Locate
trnD-GUC gene − 56751 56824 74 Locate
trnY-GUA gene − 56933 57016 84 Locate
trnE-TTC gene − 57076 57148 73 Locate
trnT-GGU gene + 57705 57776 72 Locate
psbD gene + 59156 60217 1062 Locate
psbC gene + 60165 61586 1422 Locate
trnS-UGA gene − 61828 61920 93 Locate
psbZ gene + 62250 62438 189 Locate
trnG-GCC gene + 62714 62784 71 Locate
trnfM-CAU gene − 62936 63009 74 Locate
rps14 gene − 63159 63461 303 Locate
psaB gene − 63584 65788 2205 Locate
psaA gene − 65814 68066 2253 Locate
ycf3 gene − 68781 70735 1955 Locate
trnS-GGA gene + 71587 71673 87 Locate
rps4 gene − 71954 72559 606 Locate
trnT-UGU gene − 72923 72995 73 Locate
trnL-UAA gene + 73669 74241 573 Locate
trnF-GAA gene + 74583 74655 73 Locate
ndhJ gene − 75305 75781 477 Locate
ndhK gene − 75882 76559 678 Locate
ndhC gene − 76613 76975 363 Locate
trnV-UAC gene − 78164 78817 654 Locate
trnM-CAU gene + 78999 79071 73 Locate
atpE gene − 79279 79680 402 Locate
atpB gene − 79677 81173 1497 Locate
rbcL gene + 81938 83398 1461 Locate
accD gene + 84084 85577 1494 Locate
psaI gene + 86271 86381 111 Locate
ycf4 gene + 86821 87375 555 Locate
cemA gene + 88023 88712 690 Locate
petA gene + 88902 89864 963 Locate
psbJ gene − 90791 90913 123 Locate
psbL gene − 91047 91163 117 Locate
psbF gene − 91187 91306 120 Locate
psbE gene − 91321 91572 252 Locate
petL gene + 92496 92591 96 Locate
petG gene + 92766 92879 114 Locate
trnW-CCA gene − 93002 93075 74 Locate
trnP-UGG gene − 93237 93310 74 Locate
psaJ gene + 93702 93836 135 Locate
rpl33 gene + 94316 94516 201 Locate
rps18 gene + 94687 94992 306 Locate
rpl20 gene − 95226 95612 387 Locate
rps12 gene − 96435 96548 114 Locate
clpP gene − 96682 98630 1949 Locate
psbB gene + 99092 100618 1527 Locate
psbT gene + 100811 100918 108 Locate
psbN gene − 100979 101110 132 Locate
psbH gene + 101216 101437 222 Locate
petB gene + 101562 102941 1380 Locate
petD gene + 103130 104346 1217 Locate
rpoA gene − 104523 105536 1014 Locate
rps11 gene − 105608 106024 417 Locate
rpl36 gene − 106126 106239 114 Locate
infA gene − 106335 106568 234 Locate
rps8 gene − 106693 107097 405 Locate
rpl14 gene − 107268 107636 369 Locate
rpl16 gene − 107763 109058 1296 Locate
rps3 gene − 109201 109863 663 Locate
rpl22 gene − 109873 110310 438 Locate
rps19 gene − 110370 110648 279 Locate
rpl2 gene − 110704 112195 1492 Locate
rpl23 gene − 112214 112495 282 Locate
trnI-CAU gene − 112661 112734 74 Locate
ycf2 gene + 112833 119693 6861 Locate
ycf15 gene + 119826 120023 198 Locate
trnL-CAA gene − 120284 120364 81 Locate
ndhB gene − 120912 123123 2212 Locate
rps7 gene − 123398 123865 468 Locate
rps12 gene − 123919 124712 794 Locate
trnV-GAC gene + 126320 126391 72 Locate
rrn16 gene + 126637 128127 1491 Locate
trnI-GAU gene + 128426 129446 1021 Locate
trnA-UGC gene + 129511 130397 887 Locate
rrn23 gene + 130566 133376 2811 Locate
rrn4.5 gene + 133474 133576 103 Locate
rrn5 gene + 133832 133952 121 Locate
trnR-ACG gene + 134196 134269 74 Locate
trnN-GUU gene − 134839 134910 72 Locate
ndhF gene − 136315 138558 2244 Locate
rpl32 gene + 139077 139253 177 Locate
trnL-UAG gene + 140035 140114 80 Locate
ccsA gene + 140199 141170 972 Locate
ndhD gene − 141437 142966 1530 Locate
psaC gene − 143060 143305 246 Locate
ndhE gene − 143556 143861 306 Locate
ndhG gene − 144078 144608 531 Locate
ndhI gene − 144958 145464 507 Locate
ndhA gene − 145540 147724 2185 Locate
ndhH gene − 147726 148961 1236 Locate
rps15 gene − 149004 149276 273 Locate
ycf1 gene − 149657 154138 4482 Locate
Status Available
Accession OR537890.1
Length 154,138 bp
GC content 38.1%
Annotated genes 132
Gene sequence records 8
Other 15 Translation Rna 37 Ribosomal Rna 8 Ribosomal Protein 26 Nad Dehydrogenase 12 Photosystem Ii 15 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources