Callicarpa rubella f. subglabra chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
ycf1 · OR537889.1 · 1–1,182 bp · −
ycf1 · OR537889.1 · 149,645–154,126 bp · −
trnR-ACG · OR537889.1 · 2,042–2,115 bp · −
rrn5 · OR537889.1 · 2,359–2,479 bp · −
rrn4.5 · OR537889.1 · 2,735–2,837 bp · −
rrn23 · OR537889.1 · 2,935–5,745 bp · −
trnA-UGC · OR537889.1 · 5,914–6,799 bp · −
trnI-GAU · OR537889.1 · 6,864–7,884 bp · −
rrn16 · OR537889.1 · 8,183–9,673 bp · −
trnV-GAC · OR537889.1 · 9,919–9,990 bp · −
ycf15 · OR537889.1 · 16,287–16,535 bp · −
ycf2 · OR537889.1 · 16,617–23,477 bp · −
trnH-GUG · OR537889.1 · 25,705–25,779 bp · −
psbA · OR537889.1 · 26,129–27,187 bp · −
trnK-UUU · OR537889.1 · 27,441–30,012 bp · −
matK · OR537889.1 · 27,747–29,270 bp · −
rps16 · OR537889.1 · 30,878–32,011 bp · −
trnQ-UUG · OR537889.1 · 33,150–33,221 bp · −
trnS-GCU · OR537889.1 · 34,360–34,447 bp · −
atpA · OR537889.1 · 36,268–37,791 bp · −
atpF · OR537889.1 · 37,859–39,106 bp · −
atpH · OR537889.1 · 39,476–39,721 bp · −
atpI · OR537889.1 · 40,730–41,473 bp · −
rps2 · OR537889.1 · 41,704–42,414 bp · −
rpoC · OR537889.1 · 42,631–46,812 bp · −
rpoC1 · OR537889.1 · 46,967–49,792 bp · −
rpoB · OR537889.1 · 49,819–53,031 bp · −
psbM · OR537889.1 · 56,121–56,225 bp · −
trnD-GUC · OR537889.1 · 56,747–56,820 bp · −
trnY-GUA · OR537889.1 · 56,929–57,012 bp · −
trnE-UUC · OR537889.1 · 57,072–57,144 bp · −
trnS-UGA · OR537889.1 · 61,824–61,916 bp · −
trnfM-CAU · OR537889.1 · 62,932–63,005 bp · −
rps14 · OR537889.1 · 63,155–63,457 bp · −
psaB · OR537889.1 · 63,580–65,784 bp · −
psaA · OR537889.1 · 65,810–68,062 bp · −
ycf3 · OR537889.1 · 68,771–70,725 bp · −
rps4 · OR537889.1 · 71,927–72,532 bp · −
trnT-TGT · OR537889.1 · 72,899–72,971 bp · −
ndhJ · OR537889.1 · 75,281–75,757 bp · −
ndhK · OR537889.1 · 75,858–76,535 bp · −
ndhC · OR537889.1 · 76,589–76,951 bp · −
trnV-UAC · OR537889.1 · 78,140–78,792 bp · −
atpE · OR537889.1 · 79,254–79,655 bp · −
atpB · OR537889.1 · 79,652–81,148 bp · −
psbJ · OR537889.1 · 90,756–90,878 bp · −
psbL · OR537889.1 · 91,012–91,128 bp · −
psbF · OR537889.1 · 91,152–91,271 bp · −
psbE · OR537889.1 · 91,286–91,537 bp · −
trnW-CCA · OR537889.1 · 92,976–93,049 bp · −
trnP-UGG · OR537889.1 · 93,211–93,284 bp · −
rpl20 · OR537889.1 · 95,201–95,587 bp · −
rps12 · OR537889.1 · 96,414–96,527 bp · −
rps12 · OR537889.1 · 123,930–124,723 bp · −
clpP · OR537889.1 · 96,685–98,633 bp · −
psbN · OR537889.1 · 100,975–101,106 bp · −
rpoA · OR537889.1 · 104,527–105,540 bp · −
rps11 · OR537889.1 · 105,612–106,028 bp · −
rpl36 · OR537889.1 · 106,130–106,243 bp · −
infA · OR537889.1 · 106,339–106,572 bp · −
rps8 · OR537889.1 · 106,697–107,101 bp · −
rpl14 · OR537889.1 · 107,273–107,641 bp · −
rpl16 · OR537889.1 · 107,768–109,069 bp · −
rps3 · OR537889.1 · 109,212–109,874 bp · −
rpl22 · OR537889.1 · 109,884–110,321 bp · −
rps19 · OR537889.1 · 110,381–110,659 bp · −
rpl2 · OR537889.1 · 110,715–112,206 bp · −
rpl23 · OR537889.1 · 112,225–112,506 bp · −
trnI-CAU · OR537889.1 · 112,672–112,745 bp · −
trnL-CAA · OR537889.1 · 120,295–120,375 bp · −
ndhB · OR537889.1 · 120,923–123,134 bp · −
rps7 · OR537889.1 · 123,409–123,876 bp · −
trnN-GUU · OR537889.1 · 134,849–134,920 bp · −
ndhF · OR537889.1 · 136,325–138,568 bp · −
ndhD · OR537889.1 · 141,447–142,976 bp · −
psaC · OR537889.1 · 143,070–143,315 bp · −
ndhE · OR537889.1 · 143,546–143,851 bp · −
ndhG · OR537889.1 · 144,065–144,595 bp · −
ndhI · OR537889.1 · 144,945–145,451 bp · −
ndhA · OR537889.1 · 145,527–147,711 bp · −
ndhH · OR537889.1 · 147,713–148,948 bp · −
rps15 · OR537889.1 · 148,991–149,263 bp · −
trnN-GUU · OR537889.1 · 1,401–1,472 bp · +
rps7 · OR537889.1 · 12,445–12,912 bp · +
ndhB · OR537889.1 · 13,187–15,398 bp · +
trnL-CAA · OR537889.1 · 15,946–16,026 bp · +
trnI-CAU · OR537889.1 · 23,576–23,649 bp · +
rpl23 · OR537889.1 · 23,815–24,096 bp · +
rpl2 · OR537889.1 · 24,115–25,606 bp · +
psbK · OR537889.1 · 33,555–33,740 bp · +
psbI · OR537889.1 · 34,132–34,242 bp · +
trnG-UCC · OR537889.1 · 35,155–35,915 bp · +
trnR-UCU · OR537889.1 · 36,092–36,163 bp · +
trnC-GCA · OR537889.1 · 54,207–54,277 bp · +
petN · OR537889.1 · 55,109–55,198 bp · +
trnT-GGU · OR537889.1 · 57,701–57,772 bp · +
psbD · OR537889.1 · 59,152–60,213 bp · +
psbC · OR537889.1 · 60,161–61,582 bp · +
psbZ · OR537889.1 · 62,246–62,434 bp · +
trnG-GCC · OR537889.1 · 62,710–62,780 bp · +
trnS-GGA · OR537889.1 · 71,560–71,646 bp · +
trnL-UAA · OR537889.1 · 73,641–74,213 bp · +
trnF-GAA · OR537889.1 · 74,559–74,631 bp · +
trnM-CAU · OR537889.1 · 78,974–79,046 bp · +
rbcL · OR537889.1 · 81,913–83,373 bp · +
accD · OR537889.1 · 84,040–85,533 bp · +
psaI · OR537889.1 · 86,236–86,346 bp · +
ycf4 · OR537889.1 · 86,786–87,340 bp · +
cemA · OR537889.1 · 87,988–88,677 bp · +
petA · OR537889.1 · 88,867–89,829 bp · +
petL · OR537889.1 · 92,470–92,565 bp · +
petG · OR537889.1 · 92,740–92,853 bp · +
psaJ · OR537889.1 · 93,676–93,810 bp · +
rpl33 · OR537889.1 · 94,290–94,490 bp · +
rps18 · OR537889.1 · 94,661–94,966 bp · +
psbB · OR537889.1 · 99,088–100,614 bp · +
psbT · OR537889.1 · 100,807–100,914 bp · +
psbH · OR537889.1 · 101,212–101,433 bp · +
petB · OR537889.1 · 101,558–102,937 bp · +
petD · OR537889.1 · 103,126–104,350 bp · +
ycf2 · OR537889.1 · 112,844–119,704 bp · +
ycf15 · OR537889.1 · 119,837–120,034 bp · +
trnV-GAC · OR537889.1 · 126,331–126,402 bp · +
rrn16 · OR537889.1 · 126,648–128,138 bp · +
trnI-GAU · OR537889.1 · 128,437–129,457 bp · +
trnA-UGC · OR537889.1 · 129,522–130,407 bp · +
rrn23 · OR537889.1 · 130,576–133,386 bp · +
rrn4.5 · OR537889.1 · 133,484–133,586 bp · +
rrn5 · OR537889.1 · 133,842–133,962 bp · +
trnR-ACG · OR537889.1 · 134,206–134,279 bp · +
rpl32 · OR537889.1 · 139,087–139,263 bp · +
trnL-UAG · OR537889.1 · 140,045–140,124 bp · +
ccsA · OR537889.1 · 140,209–141,180 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa rubella f. subglabra
ANNOTATED PLASTOME
OR537889.1
154,126 bp · 131 genes
Gene function
Other
Transfer RNA
Ribosomal RNA
Ribosomal protein
NADH dehydrogenase
Photosystem II
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
0 38532 77063 115594 154126 bp
Forward strand 5′ → 3′
trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA
ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2 trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-TGT ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
ycf1 gene − 1 1182 1182 Locate
trnN-GUU gene + 1401 1472 72 Locate
trnR-ACG gene − 2042 2115 74 Locate
rrn5 gene − 2359 2479 121 Locate
rrn4.5 gene − 2735 2837 103 Locate
rrn23 gene − 2935 5745 2811 Locate
trnA-UGC gene − 5914 6799 886 Locate
trnI-GAU gene − 6864 7884 1021 Locate
rrn16 gene − 8183 9673 1491 Locate
trnV-GAC gene − 9919 9990 72 Locate
rps7 gene + 12445 12912 468 Locate
ndhB gene + 13187 15398 2212 Locate
trnL-CAA gene + 15946 16026 81 Locate
ycf15 gene − 16287 16535 249 Locate
ycf2 gene − 16617 23477 6861 Locate
trnI-CAU gene + 23576 23649 74 Locate
rpl23 gene + 23815 24096 282 Locate
rpl2 gene + 24115 25606 1492 Locate
trnH-GUG gene − 25705 25779 75 Locate
psbA gene − 26129 27187 1059 Locate
trnK-UUU gene − 27441 30012 2572 Locate
matK gene − 27747 29270 1524 Locate
rps16 gene − 30878 32011 1134 Locate
trnQ-UUG gene − 33150 33221 72 Locate
psbK gene + 33555 33740 186 Locate
psbI gene + 34132 34242 111 Locate
trnS-GCU gene − 34360 34447 88 Locate
trnG-UCC gene + 35155 35915 761 Locate
trnR-UCU gene + 36092 36163 72 Locate
atpA gene − 36268 37791 1524 Locate
atpF gene − 37859 39106 1248 Locate
atpH gene − 39476 39721 246 Locate
atpI gene − 40730 41473 744 Locate
rps2 gene − 41704 42414 711 Locate
rpoC gene − 42631 46812 4182 Locate
rpoC1 gene − 46967 49792 2826 Locate
rpoB gene − 49819 53031 3213 Locate
trnC-GCA gene + 54207 54277 71 Locate
petN gene + 55109 55198 90 Locate
psbM gene − 56121 56225 105 Locate
trnD-GUC gene − 56747 56820 74 Locate
trnY-GUA gene − 56929 57012 84 Locate
trnE-UUC gene − 57072 57144 73 Locate
trnT-GGU gene + 57701 57772 72 Locate
psbD gene + 59152 60213 1062 Locate
psbC gene + 60161 61582 1422 Locate
trnS-UGA gene − 61824 61916 93 Locate
psbZ gene + 62246 62434 189 Locate
trnG-GCC gene + 62710 62780 71 Locate
trnfM-CAU gene − 62932 63005 74 Locate
rps14 gene − 63155 63457 303 Locate
psaB gene − 63580 65784 2205 Locate
psaA gene − 65810 68062 2253 Locate
ycf3 gene − 68771 70725 1955 Locate
trnS-GGA gene + 71560 71646 87 Locate
rps4 gene − 71927 72532 606 Locate
trnT-TGT gene − 72899 72971 73 Locate
trnL-UAA gene + 73641 74213 573 Locate
trnF-GAA gene + 74559 74631 73 Locate
ndhJ gene − 75281 75757 477 Locate
ndhK gene − 75858 76535 678 Locate
ndhC gene − 76589 76951 363 Locate
trnV-UAC gene − 78140 78792 653 Locate
trnM-CAU gene + 78974 79046 73 Locate
atpE gene − 79254 79655 402 Locate
atpB gene − 79652 81148 1497 Locate
rbcL gene + 81913 83373 1461 Locate
accD gene + 84040 85533 1494 Locate
psaI gene + 86236 86346 111 Locate
ycf4 gene + 86786 87340 555 Locate
cemA gene + 87988 88677 690 Locate
petA gene + 88867 89829 963 Locate
psbJ gene − 90756 90878 123 Locate
psbL gene − 91012 91128 117 Locate
psbF gene − 91152 91271 120 Locate
psbE gene − 91286 91537 252 Locate
petL gene + 92470 92565 96 Locate
petG gene + 92740 92853 114 Locate
trnW-CCA gene − 92976 93049 74 Locate
trnP-UGG gene − 93211 93284 74 Locate
psaJ gene + 93676 93810 135 Locate
rpl33 gene + 94290 94490 201 Locate
rps18 gene + 94661 94966 306 Locate
rpl20 gene − 95201 95587 387 Locate
rps12 gene − 96414 96527 114 Locate
clpP gene − 96685 98633 1949 Locate
psbB gene + 99088 100614 1527 Locate
psbT gene + 100807 100914 108 Locate
psbN gene − 100975 101106 132 Locate
psbH gene + 101212 101433 222 Locate
petB gene + 101558 102937 1380 Locate
petD gene + 103126 104350 1225 Locate
rpoA gene − 104527 105540 1014 Locate
rps11 gene − 105612 106028 417 Locate
rpl36 gene − 106130 106243 114 Locate
infA gene − 106339 106572 234 Locate
rps8 gene − 106697 107101 405 Locate
rpl14 gene − 107273 107641 369 Locate
rpl16 gene − 107768 109069 1302 Locate
rps3 gene − 109212 109874 663 Locate
rpl22 gene − 109884 110321 438 Locate
rps19 gene − 110381 110659 279 Locate
rpl2 gene − 110715 112206 1492 Locate
rpl23 gene − 112225 112506 282 Locate
trnI-CAU gene − 112672 112745 74 Locate
ycf2 gene + 112844 119704 6861 Locate
ycf15 gene + 119837 120034 198 Locate
trnL-CAA gene − 120295 120375 81 Locate
ndhB gene − 120923 123134 2212 Locate
rps7 gene − 123409 123876 468 Locate
rps12 gene − 123930 124723 794 Locate
trnV-GAC gene + 126331 126402 72 Locate
rrn16 gene + 126648 128138 1491 Locate
trnI-GAU gene + 128437 129457 1021 Locate
trnA-UGC gene + 129522 130407 886 Locate
rrn23 gene + 130576 133386 2811 Locate
rrn4.5 gene + 133484 133586 103 Locate
rrn5 gene + 133842 133962 121 Locate
trnR-ACG gene + 134206 134279 74 Locate
trnN-GUU gene − 134849 134920 72 Locate
ndhF gene − 136325 138568 2244 Locate
rpl32 gene + 139087 139263 177 Locate
trnL-UAG gene + 140045 140124 80 Locate
ccsA gene + 140209 141180 972 Locate
ndhD gene − 141447 142976 1530 Locate
psaC gene − 143070 143315 246 Locate
ndhE gene − 143546 143851 306 Locate
ndhG gene − 144065 144595 531 Locate
ndhI gene − 144945 145451 507 Locate
ndhA gene − 145527 147711 2185 Locate
ndhH gene − 147713 148948 1236 Locate
rps15 gene − 148991 149263 273 Locate
ycf1 gene − 149645 154126 4482 Locate
Status Available
Accession OR537889.1
Length 154,126 bp
GC content 38.1%
Annotated genes 131
Gene sequence records 8
Other 15 Translation Rna 37 Ribosomal Rna 8 Ribosomal Protein 25 Nad Dehydrogenase 12 Photosystem Ii 15 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources