Callicarpa rubella chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
ycf1 · NC_058533.1 · 1–1,077 bp · −
ycf1 · NC_058533.1 · 149,616–154,202 bp · −
trnR-ACG · NC_058533.1 · 1,937–2,010 bp · −
rrn5 · NC_058533.1 · 2,254–2,374 bp · −
rrn4.5 · NC_058533.1 · 2,630–2,732 bp · −
rrn23 · NC_058533.1 · 2,830–5,640 bp · −
trnA-UGC · NC_058533.1 · 5,809–6,694 bp · −
trnI-GAU · NC_058533.1 · 6,759–7,779 bp · −
rrn16 · NC_058533.1 · 8,078–9,568 bp · −
trnV-GAC · NC_058533.1 · 9,814–9,885 bp · −
rps12 · NC_058533.1 · 96,382–96,495 bp · −
ycf15 · NC_058533.1 · 16,182–16,430 bp · −
ycf2 · NC_058533.1 · 16,512–23,372 bp · −
trnH-GUG · NC_058533.1 · 25,600–25,674 bp · −
psbA · NC_058533.1 · 26,030–27,088 bp · −
trnK-UUU · NC_058533.1 · 27,342–29,919 bp · −
matK · NC_058533.1 · 27,648–29,177 bp · −
rps16 · NC_058533.1 · 30,786–31,919 bp · −
trnQ-UUG · NC_058533.1 · 33,072–33,143 bp · −
trnS-GCU · NC_058533.1 · 34,285–34,372 bp · −
atpA · NC_058533.1 · 36,193–37,716 bp · −
atpF · NC_058533.1 · 37,784–39,030 bp · −
atpH · NC_058533.1 · 39,403–39,648 bp · −
atpI · NC_058533.1 · 40,657–41,400 bp · −
rps2 · NC_058533.1 · 41,632–42,342 bp · −
rpoC · NC_058533.1 · 42,559–46,740 bp · −
rpoC1 · NC_058533.1 · 46,895–49,720 bp · −
rpoB · NC_058533.1 · 49,747–52,959 bp · −
psbM · NC_058533.1 · 56,037–56,141 bp · −
trnD-GUC · NC_058533.1 · 56,678–56,751 bp · −
trnY-GUA · NC_058533.1 · 56,860–56,943 bp · −
trnE-UUC · NC_058533.1 · 57,003–57,075 bp · −
trnS-UGA · NC_058533.1 · 61,755–61,847 bp · −
trnfM-CAU · NC_058533.1 · 62,863–62,936 bp · −
rps14 · NC_058533.1 · 63,086–63,388 bp · −
psaB · NC_058533.1 · 63,511–65,715 bp · −
psaA · NC_058533.1 · 65,741–67,993 bp · −
ycf3 · NC_058533.1 · 68,708–70,656 bp · −
rps4 · NC_058533.1 · 71,875–72,480 bp · −
trnT-UGU · NC_058533.1 · 72,848–72,920 bp · −
ndhJ · NC_058533.1 · 75,230–75,706 bp · −
ndhK · NC_058533.1 · 75,807–76,484 bp · −
ndhC · NC_058533.1 · 76,538–76,900 bp · −
trnV-UAC · NC_058533.1 · 78,090–78,742 bp · −
atpE · NC_058533.1 · 79,204–79,605 bp · −
atpB · NC_058533.1 · 79,602–81,098 bp · −
psbJ · NC_058533.1 · 90,724–90,846 bp · −
psbL · NC_058533.1 · 90,980–91,096 bp · −
psbF · NC_058533.1 · 91,120–91,239 bp · −
psbE · NC_058533.1 · 91,254–91,505 bp · −
trnW-CCA · NC_058533.1 · 92,945–93,018 bp · −
trnP-UGG · NC_058533.1 · 93,180–93,253 bp · −
rpl20 · NC_058533.1 · 95,170–95,556 bp · −
rps12 · NC_058533.1 · 123,875–124,668 bp · −
clpP · NC_058533.1 · 96,640–98,585 bp · −
psbN · NC_058533.1 · 100,934–101,065 bp · −
rpoA · NC_058533.1 · 104,478–105,491 bp · −
rps11 · NC_058533.1 · 105,563–105,979 bp · −
rpl36 · NC_058533.1 · 106,081–106,194 bp · −
infA · NC_058533.1 · 106,290–106,523 bp · −
rps8 · NC_058533.1 · 106,648–107,052 bp · −
rpl14 · NC_058533.1 · 107,223–107,591 bp · −
rpl16 · NC_058533.1 · 107,718–109,014 bp · −
rps3 · NC_058533.1 · 109,157–109,819 bp · −
rpl22 · NC_058533.1 · 109,829–110,266 bp · −
rps19 · NC_058533.1 · 110,326–110,604 bp · −
rpl2 · NC_058533.1 · 110,660–112,151 bp · −
rpl23 · NC_058533.1 · 112,170–112,451 bp · −
trnI-CAU · NC_058533.1 · 112,617–112,690 bp · −
trnL-CAA · NC_058533.1 · 120,240–120,320 bp · −
ndhB · NC_058533.1 · 120,868–123,079 bp · −
rps7 · NC_058533.1 · 123,354–123,821 bp · −
trnN-GUU · NC_058533.1 · 134,794–134,865 bp · −
ndhF · NC_058533.1 · 136,270–138,513 bp · −
ndhD · NC_058533.1 · 141,392–142,894 bp · −
psaC · NC_058533.1 · 143,015–143,260 bp · −
ndhE · NC_058533.1 · 143,511–143,816 bp · −
ndhG · NC_058533.1 · 144,030–144,560 bp · −
ndhI · NC_058533.1 · 144,909–145,415 bp · −
ndhA · NC_058533.1 · 145,491–147,675 bp · −
ndhH · NC_058533.1 · 147,677–148,858 bp · −
rps15 · NC_058533.1 · 148,955–149,227 bp · −
trnN-GUU · NC_058533.1 · 1,296–1,367 bp · +
rps12 · NC_058533.1 · 11,493–12,286 bp · +
rps7 · NC_058533.1 · 12,340–12,807 bp · +
ndhB · NC_058533.1 · 13,082–15,293 bp · +
trnL-CAA · NC_058533.1 · 15,841–15,921 bp · +
trnI-CAU · NC_058533.1 · 23,471–23,544 bp · +
rpl23 · NC_058533.1 · 23,710–23,991 bp · +
rpl2 · NC_058533.1 · 24,010–25,501 bp · +
psbK · NC_058533.1 · 33,477–33,662 bp · +
psbI · NC_058533.1 · 34,055–34,165 bp · +
trnG-UCC · NC_058533.1 · 35,080–35,840 bp · +
trnR-UCU · NC_058533.1 · 36,017–36,088 bp · +
trnC-GCA · NC_058533.1 · 54,135–54,205 bp · +
petN · NC_058533.1 · 55,037–55,126 bp · +
trnT-GGU · NC_058533.1 · 57,632–57,703 bp · +
psbD · NC_058533.1 · 59,083–60,144 bp · +
psbC · NC_058533.1 · 60,092–61,513 bp · +
psbZ · NC_058533.1 · 62,177–62,365 bp · +
trnG-GCC · NC_058533.1 · 62,641–62,711 bp · +
trnS-GGA · NC_058533.1 · 71,508–71,594 bp · +
trnL-UAA · NC_058533.1 · 73,594–74,166 bp · +
trnF-GAA · NC_058533.1 · 74,508–74,580 bp · +
trnM-CAU · NC_058533.1 · 78,924–78,996 bp · +
rbcL · NC_058533.1 · 81,883–83,322 bp · +
accD · NC_058533.1 · 83,957–85,501 bp · +
psaI · NC_058533.1 · 86,204–86,314 bp · +
ycf4 · NC_058533.1 · 86,754–87,308 bp · +
cemA · NC_058533.1 · 87,956–88,645 bp · +
petA · NC_058533.1 · 88,835–89,797 bp · +
petL · NC_058533.1 · 92,439–92,534 bp · +
petG · NC_058533.1 · 92,709–92,822 bp · +
psaJ · NC_058533.1 · 93,645–93,779 bp · +
rpl33 · NC_058533.1 · 94,259–94,459 bp · +
rps18 · NC_058533.1 · 94,630–94,935 bp · +
psbB · NC_058533.1 · 99,047–100,573 bp · +
psbT · NC_058533.1 · 100,766–100,873 bp · +
psbH · NC_058533.1 · 101,153–101,392 bp · +
petB · NC_058533.1 · 101,517–102,896 bp · +
petD · NC_058533.1 · 103,085–104,301 bp · +
ycf2 · NC_058533.1 · 112,789–119,649 bp · +
ycf15 · NC_058533.1 · 119,782–119,979 bp · +
trnV-GAC · NC_058533.1 · 126,276–126,347 bp · +
rrn16 · NC_058533.1 · 126,593–128,083 bp · +
trnI-GAU · NC_058533.1 · 128,382–129,402 bp · +
trnA-UGC · NC_058533.1 · 129,467–130,352 bp · +
rrn23 · NC_058533.1 · 130,521–133,331 bp · +
rrn4.5 · NC_058533.1 · 133,429–133,531 bp · +
rrn5 · NC_058533.1 · 133,787–133,907 bp · +
trnR-ACG · NC_058533.1 · 134,151–134,224 bp · +
rpl32 · NC_058533.1 · 139,032–139,208 bp · +
trnL-UAG · NC_058533.1 · 139,991–140,070 bp · +
ccsA · NC_058533.1 · 140,154–141,125 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa rubella
ANNOTATED PLASTOME
NC_058533.1
154,202 bp · 132 genes
Gene function
Other
Transfer RNA
Ribosomal RNA
Ribosomal protein
NADH dehydrogenase
Photosystem II
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
0 38550 77101 115652 154202 bp
Forward strand 5′ → 3′
trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA
ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2 trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
ycf1 gene − 1 1077 1077 Locate
trnN-GUU gene + 1296 1367 72 Locate
trnR-ACG gene − 1937 2010 74 Locate
rrn5 gene − 2254 2374 121 Locate
rrn4.5 gene − 2630 2732 103 Locate
rrn23 gene − 2830 5640 2811 Locate
trnA-UGC gene − 5809 6694 886 Locate
trnI-GAU gene − 6759 7779 1021 Locate
rrn16 gene − 8078 9568 1491 Locate
trnV-GAC gene − 9814 9885 72 Locate
rps12 gene + 11493 12286 794 Locate
rps7 gene + 12340 12807 468 Locate
ndhB gene + 13082 15293 2212 Locate
trnL-CAA gene + 15841 15921 81 Locate
ycf15 gene − 16182 16430 249 Locate
ycf2 gene − 16512 23372 6861 Locate
trnI-CAU gene + 23471 23544 74 Locate
rpl23 gene + 23710 23991 282 Locate
rpl2 gene + 24010 25501 1492 Locate
trnH-GUG gene − 25600 25674 75 Locate
psbA gene − 26030 27088 1059 Locate
trnK-UUU gene − 27342 29919 2578 Locate
matK gene − 27648 29177 1530 Locate
rps16 gene − 30786 31919 1134 Locate
trnQ-UUG gene − 33072 33143 72 Locate
psbK gene + 33477 33662 186 Locate
psbI gene + 34055 34165 111 Locate
trnS-GCU gene − 34285 34372 88 Locate
trnG-UCC gene + 35080 35840 761 Locate
trnR-UCU gene + 36017 36088 72 Locate
atpA gene − 36193 37716 1524 Locate
atpF gene − 37784 39030 1247 Locate
atpH gene − 39403 39648 246 Locate
atpI gene − 40657 41400 744 Locate
rps2 gene − 41632 42342 711 Locate
rpoC gene − 42559 46740 4182 Locate
rpoC1 gene − 46895 49720 2826 Locate
rpoB gene − 49747 52959 3213 Locate
trnC-GCA gene + 54135 54205 71 Locate
petN gene + 55037 55126 90 Locate
psbM gene − 56037 56141 105 Locate
trnD-GUC gene − 56678 56751 74 Locate
trnY-GUA gene − 56860 56943 84 Locate
trnE-UUC gene − 57003 57075 73 Locate
trnT-GGU gene + 57632 57703 72 Locate
psbD gene + 59083 60144 1062 Locate
psbC gene + 60092 61513 1422 Locate
trnS-UGA gene − 61755 61847 93 Locate
psbZ gene + 62177 62365 189 Locate
trnG-GCC gene + 62641 62711 71 Locate
trnfM-CAU gene − 62863 62936 74 Locate
rps14 gene − 63086 63388 303 Locate
psaB gene − 63511 65715 2205 Locate
psaA gene − 65741 67993 2253 Locate
ycf3 gene − 68708 70656 1949 Locate
trnS-GGA gene + 71508 71594 87 Locate
rps4 gene − 71875 72480 606 Locate
trnT-UGU gene − 72848 72920 73 Locate
trnL-UAA gene + 73594 74166 573 Locate
trnF-GAA gene + 74508 74580 73 Locate
ndhJ gene − 75230 75706 477 Locate
ndhK gene − 75807 76484 678 Locate
ndhC gene − 76538 76900 363 Locate
trnV-UAC gene − 78090 78742 653 Locate
trnM-CAU gene + 78924 78996 73 Locate
atpE gene − 79204 79605 402 Locate
atpB gene − 79602 81098 1497 Locate
rbcL gene + 81883 83322 1440 Locate
accD gene + 83957 85501 1545 Locate
psaI gene + 86204 86314 111 Locate
ycf4 gene + 86754 87308 555 Locate
cemA gene + 87956 88645 690 Locate
petA gene + 88835 89797 963 Locate
psbJ gene − 90724 90846 123 Locate
psbL gene − 90980 91096 117 Locate
psbF gene − 91120 91239 120 Locate
psbE gene − 91254 91505 252 Locate
petL gene + 92439 92534 96 Locate
petG gene + 92709 92822 114 Locate
trnW-CCA gene − 92945 93018 74 Locate
trnP-UGG gene − 93180 93253 74 Locate
psaJ gene + 93645 93779 135 Locate
rpl33 gene + 94259 94459 201 Locate
rps18 gene + 94630 94935 306 Locate
rpl20 gene − 95170 95556 387 Locate
rps12 gene − 96382 96495 114 Locate
clpP gene − 96640 98585 1946 Locate
psbB gene + 99047 100573 1527 Locate
psbT gene + 100766 100873 108 Locate
psbN gene − 100934 101065 132 Locate
psbH gene + 101153 101392 240 Locate
petB gene + 101517 102896 1380 Locate
petD gene + 103085 104301 1217 Locate
rpoA gene − 104478 105491 1014 Locate
rps11 gene − 105563 105979 417 Locate
rpl36 gene − 106081 106194 114 Locate
infA gene − 106290 106523 234 Locate
rps8 gene − 106648 107052 405 Locate
rpl14 gene − 107223 107591 369 Locate
rpl16 gene − 107718 109014 1297 Locate
rps3 gene − 109157 109819 663 Locate
rpl22 gene − 109829 110266 438 Locate
rps19 gene − 110326 110604 279 Locate
rpl2 gene − 110660 112151 1492 Locate
rpl23 gene − 112170 112451 282 Locate
trnI-CAU gene − 112617 112690 74 Locate
ycf2 gene + 112789 119649 6861 Locate
ycf15 gene + 119782 119979 198 Locate
trnL-CAA gene − 120240 120320 81 Locate
ndhB gene − 120868 123079 2212 Locate
rps7 gene − 123354 123821 468 Locate
rps12 gene − 123875 124668 794 Locate
trnV-GAC gene + 126276 126347 72 Locate
rrn16 gene + 126593 128083 1491 Locate
trnI-GAU gene + 128382 129402 1021 Locate
trnA-UGC gene + 129467 130352 886 Locate
rrn23 gene + 130521 133331 2811 Locate
rrn4.5 gene + 133429 133531 103 Locate
rrn5 gene + 133787 133907 121 Locate
trnR-ACG gene + 134151 134224 74 Locate
trnN-GUU gene − 134794 134865 72 Locate
ndhF gene − 136270 138513 2244 Locate
rpl32 gene + 139032 139208 177 Locate
trnL-UAG gene + 139991 140070 80 Locate
ccsA gene + 140154 141125 972 Locate
ndhD gene − 141392 142894 1503 Locate
psaC gene − 143015 143260 246 Locate
ndhE gene − 143511 143816 306 Locate
ndhG gene − 144030 144560 531 Locate
ndhI gene − 144909 145415 507 Locate
ndhA gene − 145491 147675 2185 Locate
ndhH gene − 147677 148858 1182 Locate
rps15 gene − 148955 149227 273 Locate
ycf1 gene − 149616 154202 4587 Locate
Status Available
Accession NC_058533.1
Length 154,202 bp
GC content 38.1%
Annotated genes 132
Gene sequence records 8
Other 15 Translation Rna 37 Ribosomal Rna 8 Ribosomal Protein 26 Nad Dehydrogenase 12 Photosystem Ii 15 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources