Coordinate-aware organelle record

Callicarpa rubella chloroplast genome

Available NC_058533.1 154,202 bp 132 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

132 features

Gene	Type	Group	Strand	Start	End	Length
ycf1	gene	other	−	0	154202	154202
trnN-GUU	gene	translation-rna	+	1295	1367	72
trnR-ACG	gene	translation-rna	−	1936	2010	74
rrn5	gene	ribosomal-rna	−	2253	2374	121
rrn4.5	gene	ribosomal-rna	−	2629	2732	103
rrn23	gene	ribosomal-rna	−	2829	5640	2811
trnA-UGC	gene	translation-rna	−	5808	6694	886
trnI-GAU	gene	translation-rna	−	6758	7779	1021
rrn16	gene	ribosomal-rna	−	8077	9568	1491
trnV-GAC	gene	translation-rna	−	9813	9885	72
rps12	gene	ribosomal-protein	+	11492	96495	85003
rps7	gene	ribosomal-protein	+	12339	12807	468
ndhB	gene	nad-dehydrogenase	+	13081	15293	2212
trnL-CAA	gene	translation-rna	+	15840	15921	81
ycf15	gene	other	−	16181	16430	249
ycf2	gene	other	−	16511	23372	6861
trnI-CAU	gene	translation-rna	+	23470	23544	74
rpl23	gene	ribosomal-protein	+	23709	23991	282
rpl2	gene	ribosomal-protein	+	24009	25501	1492
trnH-GUG	gene	translation-rna	−	25599	25674	75
psbA	gene	photosystem-ii	−	26029	27088	1059
trnK-UUU	gene	translation-rna	−	27341	29919	2578
matK	gene	other	−	27647	29177	1530
rps16	gene	ribosomal-protein	−	30785	31919	1134
trnQ-UUG	gene	translation-rna	−	33071	33143	72
psbK	gene	photosystem-ii	+	33476	33662	186
psbI	gene	photosystem-ii	+	34054	34165	111
trnS-GCU	gene	translation-rna	−	34284	34372	88
trnG-UCC	gene	translation-rna	+	35079	35840	761
trnR-UCU	gene	translation-rna	+	36016	36088	72
atpA	gene	atp-synthase	−	36192	37716	1524
atpF	gene	atp-synthase	−	37783	39030	1247
atpH	gene	atp-synthase	−	39402	39648	246
atpI	gene	atp-synthase	−	40656	41400	744
rps2	gene	ribosomal-protein	−	41631	42342	711
rpoC	gene	rna-polymerase	−	42558	46740	4182
rpoC1	gene	rna-polymerase	−	46894	49720	2826
rpoB	gene	rna-polymerase	−	49746	52959	3213
trnC-GCA	gene	translation-rna	+	54134	54205	71
petN	gene	cytochrome	+	55036	55126	90
psbM	gene	photosystem-ii	−	56036	56141	105
trnD-GUC	gene	translation-rna	−	56677	56751	74
trnY-GUA	gene	translation-rna	−	56859	56943	84
trnE-UUC	gene	translation-rna	−	57002	57075	73
trnT-GGU	gene	translation-rna	+	57631	57703	72
psbD	gene	photosystem-ii	+	59082	60144	1062
psbC	gene	photosystem-ii	+	60091	61513	1422
trnS-UGA	gene	translation-rna	−	61754	61847	93
psbZ	gene	photosystem-ii	+	62176	62365	189
trnG-GCC	gene	translation-rna	+	62640	62711	71
trnfM-CAU	gene	translation-rna	−	62862	62936	74
rps14	gene	ribosomal-protein	−	63085	63388	303
psaB	gene	photosystem-i	−	63510	65715	2205
psaA	gene	photosystem-i	−	65740	67993	2253
ycf3	gene	other	−	68707	70656	1949
trnS-GGA	gene	translation-rna	+	71507	71594	87
rps4	gene	ribosomal-protein	−	71874	72480	606
trnT-UGU	gene	translation-rna	−	72847	72920	73
trnL-UAA	gene	translation-rna	+	73593	74166	573
trnF-GAA	gene	translation-rna	+	74507	74580	73
ndhJ	gene	nad-dehydrogenase	−	75229	75706	477
ndhK	gene	nad-dehydrogenase	−	75806	76484	678
ndhC	gene	nad-dehydrogenase	−	76537	76900	363
trnV-UAC	gene	translation-rna	−	78089	78742	653
trnM-CAU	gene	translation-rna	+	78923	78996	73
atpE	gene	atp-synthase	−	79203	79605	402
atpB	gene	atp-synthase	−	79601	81098	1497
rbcL	gene	other	+	81882	83322	1440
accD	gene	other	+	83956	85501	1545
psaI	gene	photosystem-i	+	86203	86314	111
ycf4	gene	other	+	86753	87308	555
cemA	gene	other	+	87955	88645	690
petA	gene	cytochrome	+	88834	89797	963
psbJ	gene	photosystem-ii	−	90723	90846	123
psbL	gene	photosystem-ii	−	90979	91096	117
psbF	gene	photosystem-ii	−	91119	91239	120
psbE	gene	photosystem-ii	−	91253	91505	252
petL	gene	cytochrome	+	92438	92534	96
petG	gene	cytochrome	+	92708	92822	114
trnW-CCA	gene	translation-rna	−	92944	93018	74
trnP-UGG	gene	translation-rna	−	93179	93253	74
psaJ	gene	photosystem-i	+	93644	93779	135
rpl33	gene	ribosomal-protein	+	94258	94459	201
rps18	gene	ribosomal-protein	+	94629	94935	306
rpl20	gene	ribosomal-protein	−	95169	95556	387
rps12	gene	ribosomal-protein	−	96381	124668	28287
clpP	gene	other	−	96639	98585	1946
psbB	gene	photosystem-ii	+	99046	100573	1527
psbT	gene	photosystem-ii	+	100765	100873	108
psbN	gene	photosystem-ii	−	100933	101065	132
psbH	gene	photosystem-ii	+	101152	101392	240
petB	gene	cytochrome	+	101516	102896	1380
petD	gene	cytochrome	+	103084	104301	1217
rpoA	gene	rna-polymerase	−	104477	105491	1014
rps11	gene	ribosomal-protein	−	105562	105979	417
rpl36	gene	ribosomal-protein	−	106080	106194	114
infA	gene	other	−	106289	106523	234
rps8	gene	ribosomal-protein	−	106647	107052	405
rpl14	gene	ribosomal-protein	−	107222	107591	369
rpl16	gene	ribosomal-protein	−	107717	109014	1297
rps3	gene	ribosomal-protein	−	109156	109819	663
rpl22	gene	ribosomal-protein	−	109828	110266	438
rps19	gene	ribosomal-protein	−	110325	110604	279
rpl2	gene	ribosomal-protein	−	110659	112151	1492
rpl23	gene	ribosomal-protein	−	112169	112451	282
trnI-CAU	gene	translation-rna	−	112616	112690	74
ycf2	gene	other	+	112788	119649	6861
ycf15	gene	other	+	119781	119979	198
trnL-CAA	gene	translation-rna	−	120239	120320	81
ndhB	gene	nad-dehydrogenase	−	120867	123079	2212
rps7	gene	ribosomal-protein	−	123353	123821	468
trnV-GAC	gene	translation-rna	+	126275	126347	72
rrn16	gene	ribosomal-rna	+	126592	128083	1491
trnI-GAU	gene	translation-rna	+	128381	129402	1021
trnA-UGC	gene	translation-rna	+	129466	130352	886
rrn23	gene	ribosomal-rna	+	130520	133331	2811
rrn4.5	gene	ribosomal-rna	+	133428	133531	103
rrn5	gene	ribosomal-rna	+	133786	133907	121
trnR-ACG	gene	translation-rna	+	134150	134224	74
trnN-GUU	gene	translation-rna	−	134793	134865	72
ndhF	gene	nad-dehydrogenase	−	136269	138513	2244
rpl32	gene	ribosomal-protein	+	139031	139208	177
trnL-UAG	gene	translation-rna	+	139990	140070	80
ccsA	gene	other	+	140153	141125	972
ndhD	gene	nad-dehydrogenase	−	141391	142894	1503
psaC	gene	photosystem-i	−	143014	143260	246
ndhE	gene	nad-dehydrogenase	−	143510	143816	306
ndhG	gene	nad-dehydrogenase	−	144029	144560	531
ndhI	gene	nad-dehydrogenase	−	144908	145415	507
ndhA	gene	nad-dehydrogenase	−	145490	147675	2185
ndhH	gene	nad-dehydrogenase	−	147676	148858	1182
rps15	gene	ribosomal-protein	−	148954	149227	273

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeNC_058533.1DNA · accDNC_058533DNA · atpBNC_058533DNA · matKNC_058533DNA · ndhFNC_058533DNA · psbANC_058533DNA · rbcLNC_058533DNA · rps12NC_058533DNA · ycf1NC_058533