Caryopteris incana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_046409.1 · 2–75 bp · −
psbA · NC_046409.1 · 298–1,356 bp · −
trnK-UUU · NC_046409.1 · 1,589–4,165 bp · −
matK · NC_046409.1 · 1,890–3,425 bp · −
rps16 · NC_046409.1 · 5,040–6,210 bp · −
trnQ-UUG · NC_046409.1 · 7,410–7,481 bp · −
trnS-GCU · NC_046409.1 · 8,439–8,526 bp · −
atpA · NC_046409.1 · 10,254–11,777 bp · −
atpF · NC_046409.1 · 11,879–13,114 bp · −
atpH · NC_046409.1 · 13,490–13,735 bp · −
atpI · NC_046409.1 · 14,767–15,510 bp · −
rps2 · NC_046409.1 · 15,743–16,579 bp · −
rpoC2 · NC_046409.1 · 16,652–20,785 bp · −
rpoC1 · NC_046409.1 · 20,952–23,774 bp · −
rpoB · NC_046409.1 · 23,801–27,013 bp · −
psbM · NC_046409.1 · 29,703–29,807 bp · −
trnD-GUC · NC_046409.1 · 30,331–30,404 bp · −
trnY-GUA · NC_046409.1 · 30,512–30,595 bp · −
trnE-UUC · NC_046409.1 · 30,655–30,727 bp · −
trnS-UGA · NC_046409.1 · 35,349–35,441 bp · −
trnfM-CAU · NC_046409.1 · 36,460–36,533 bp · −
rps14 · NC_046409.1 · 36,678–36,980 bp · −
psaB · NC_046409.1 · 37,105–39,309 bp · −
psaA · NC_046409.1 · 39,335–41,587 bp · −
ycf3 · NC_046409.1 · 42,325–44,263 bp · −
rps4 · NC_046409.1 · 45,126–45,728 bp · −
trnT-UGU · NC_046409.1 · 46,090–46,162 bp · −
ndhJ · NC_046409.1 · 48,461–48,937 bp · −
ndhK · NC_046409.1 · 49,038–49,889 bp · −
ndhC · NC_046409.1 · 49,769–50,131 bp · −
trnV-UAC · NC_046409.1 · 50,995–51,658 bp · −
atpE · NC_046409.1 · 52,037–52,459 bp · −
atpB · NC_046409.1 · 52,456–53,952 bp · −
psbJ · NC_046409.1 · 63,560–63,682 bp · −
psbL · NC_046409.1 · 63,824–63,940 bp · −
psbF · NC_046409.1 · 63,964–64,083 bp · −
psbE · NC_046409.1 · 64,098–64,349 bp · −
trnW-CCA · NC_046409.1 · 65,760–65,833 bp · −
trnP-UGG · NC_046409.1 · 66,003–66,076 bp · −
rpl20 · NC_046409.1 · 67,871–68,257 bp · −
rps12 · NC_046409.1 · 69,073–69,186 bp · −
rps12 · NC_046409.1 · 96,473–97,269 bp · −
clpP · NC_046409.1 · 69,323–71,243 bp · −
psbN · NC_046409.1 · 73,578–73,709 bp · −
rpoA · NC_046409.1 · 77,097–78,116 bp · −
rps11 · NC_046409.1 · 78,188–78,604 bp · −
rpl36 · NC_046409.1 · 78,707–78,820 bp · −
infA · NC_046409.1 · 78,916–79,149 bp · −
rps8 · NC_046409.1 · 79,274–79,678 bp · −
rpl14 · NC_046409.1 · 79,854–80,222 bp · −
rpl16 · NC_046409.1 · 80,349–81,626 bp · −
rps3 · NC_046409.1 · 81,784–82,434 bp · −
rpl22 · NC_046409.1 · 82,419–82,886 bp · −
rps19 · NC_046409.1 · 82,942–83,220 bp · −
rpl2 · NC_046409.1 · 83,274–84,765 bp · −
rpl23 · NC_046409.1 · 84,784–85,065 bp · −
trnI-CAU · NC_046409.1 · 85,231–85,304 bp · −
trnL-CAA · NC_046409.1 · 92,839–92,919 bp · −
ndhB · NC_046409.1 · 93,466–95,677 bp · −
rps7 · NC_046409.1 · 95,952–96,419 bp · −
trnN-GUU · NC_046409.1 · 107,325–107,396 bp · −
ndhF · NC_046409.1 · 108,736–111,021 bp · −
ndhD · NC_046409.1 · 113,552–115,081 bp · −
psaC · NC_046409.1 · 115,173–115,418 bp · −
ndhE · NC_046409.1 · 115,669–115,974 bp · −
ndhG · NC_046409.1 · 116,176–116,706 bp · −
ndhI · NC_046409.1 · 117,033–117,539 bp · −
ndhA · NC_046409.1 · 117,615–119,621 bp · −
ndhH · NC_046409.1 · 119,623–120,858 bp · −
rps15 · NC_046409.1 · 120,901–121,173 bp · −
ycf1 · NC_046409.1 · 121,561–127,251 bp · −
trnR-ACG · NC_046409.1 · 128,096–128,169 bp · −
rrn5 · NC_046409.1 · 128,414–128,534 bp · −
rrn4.5 · NC_046409.1 · 128,764–128,866 bp · −
rrn23 · NC_046409.1 · 128,967–131,783 bp · −
trnA-UGC · NC_046409.1 · 131,945–132,825 bp · −
trnI-GAU · NC_046409.1 · 132,890–133,910 bp · −
rrn16 · NC_046409.1 · 134,209–135,699 bp · −
trnV-GAC · NC_046409.1 · 135,927–135,998 bp · −
ycf15 · NC_046409.1 · 142,295–142,543 bp · −
ycf2 · NC_046409.1 · 142,634–149,473 bp · −
psbK · NC_046409.1 · 7,802–7,996 bp · +
psbI · NC_046409.1 · 8,208–8,318 bp · +
trnG-UCC · NC_046409.1 · 9,177–9,936 bp · +
trnR-UCU · NC_046409.1 · 10,074–10,145 bp · +
trnC-GCA · NC_046409.1 · 28,166–28,236 bp · +
petN · NC_046409.1 · 28,970–29,059 bp · +
trnT-GGU · NC_046409.1 · 31,266–31,337 bp · +
psbD · NC_046409.1 · 32,665–33,726 bp · +
psbC · NC_046409.1 · 33,674–35,095 bp · +
psbZ · NC_046409.1 · 35,761–35,949 bp · +
trnG-GCC · NC_046409.1 · 36,219–36,289 bp · +
trnS-GGA · NC_046409.1 · 44,738–44,824 bp · +
trnL-UAA · NC_046409.1 · 46,863–47,434 bp · +
trnF-GAA · NC_046409.1 · 47,729–47,801 bp · +
trnM-CAU · NC_046409.1 · 51,839–51,911 bp · +
rbcL · NC_046409.1 · 54,692–56,161 bp · +
accD · NC_046409.1 · 56,767–58,305 bp · +
psaI · NC_046409.1 · 59,018–59,128 bp · +
ycf4 · NC_046409.1 · 59,538–60,092 bp · +
cemA · NC_046409.1 · 60,738–61,427 bp · +
petA · NC_046409.1 · 61,640–62,602 bp · +
petL · NC_046409.1 · 65,254–65,349 bp · +
petG · NC_046409.1 · 65,524–65,637 bp · +
psaJ · NC_046409.1 · 66,365–66,499 bp · +
rpl33 · NC_046409.1 · 66,963–67,163 bp · +
rps18 · NC_046409.1 · 67,329–67,634 bp · +
rps12 · NC_046409.1 · 137,597–138,393 bp · +
psbB · NC_046409.1 · 71,689–73,215 bp · +
psbT · NC_046409.1 · 73,410–73,517 bp · +
psbH · NC_046409.1 · 73,815–74,036 bp · +
petB · NC_046409.1 · 74,157–75,516 bp · +
petD · NC_046409.1 · 75,705–76,920 bp · +
ycf2 · NC_046409.1 · 85,393–92,232 bp · +
ycf15 · NC_046409.1 · 92,323–92,571 bp · +
trnV-GAC · NC_046409.1 · 98,868–98,939 bp · +
rrn16 · NC_046409.1 · 99,167–100,657 bp · +
trnI-GAU · NC_046409.1 · 100,956–101,976 bp · +
trnA-UGC · NC_046409.1 · 102,041–102,921 bp · +
rrn23 · NC_046409.1 · 103,083–105,899 bp · +
rrn4.5 · NC_046409.1 · 106,000–106,102 bp · +
rrn5 · NC_046409.1 · 106,332–106,452 bp · +
trnR-ACG · NC_046409.1 · 106,697–106,770 bp · +
rpl32 · NC_046409.1 · 111,576–111,752 bp · +
trnL-UAG · NC_046409.1 · 112,165–112,244 bp · +
ccsA · NC_046409.1 · 112,332–113,303 bp · +
trnN-GUU · NC_046409.1 · 127,470–127,541 bp · +
rps7 · NC_046409.1 · 138,447–138,914 bp · +
ndhB · NC_046409.1 · 139,189–141,400 bp · +
trnL-CAA · NC_046409.1 · 141,947–142,027 bp · +
trnI-CAU · NC_046409.1 · 149,562–149,635 bp · +
rpl23 · NC_046409.1 · 149,801–150,082 bp · +
rpl2 · NC_046409.1 · 150,101–151,592 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Caryopteris incana
ANNOTATED PLASTOME
NC_046409.1
151,687 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37922 75844 113765 151687 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 298 1356 1059 Locate
trnK-UUU gene − 1589 4165 2577 Locate
matK gene − 1890 3425 1536 Locate
rps16 gene − 5040 6210 1171 Locate
trnQ-UUG gene − 7410 7481 72 Locate
psbK gene + 7802 7996 195 Locate
psbI gene + 8208 8318 111 Locate
trnS-GCU gene − 8439 8526 88 Locate
trnG-UCC gene + 9177 9936 760 Locate
trnR-UCU gene + 10074 10145 72 Locate
atpA gene − 10254 11777 1524 Locate
atpF gene − 11879 13114 1236 Locate
atpH gene − 13490 13735 246 Locate
atpI gene − 14767 15510 744 Locate
rps2 gene − 15743 16579 837 Locate
rpoC2 gene − 16652 20785 4134 Locate
rpoC1 gene − 20952 23774 2823 Locate
rpoB gene − 23801 27013 3213 Locate
trnC-GCA gene + 28166 28236 71 Locate
petN gene + 28970 29059 90 Locate
psbM gene − 29703 29807 105 Locate
trnD-GUC gene − 30331 30404 74 Locate
trnY-GUA gene − 30512 30595 84 Locate
trnE-UUC gene − 30655 30727 73 Locate
trnT-GGU gene + 31266 31337 72 Locate
psbD gene + 32665 33726 1062 Locate
psbC gene + 33674 35095 1422 Locate
trnS-UGA gene − 35349 35441 93 Locate
psbZ gene + 35761 35949 189 Locate
trnG-GCC gene + 36219 36289 71 Locate
trnfM-CAU gene − 36460 36533 74 Locate
rps14 gene − 36678 36980 303 Locate
psaB gene − 37105 39309 2205 Locate
psaA gene − 39335 41587 2253 Locate
ycf3 gene − 42325 44263 1939 Locate
trnS-GGA gene + 44738 44824 87 Locate
rps4 gene − 45126 45728 603 Locate
trnT-UGU gene − 46090 46162 73 Locate
trnL-UAA gene + 46863 47434 572 Locate
trnF-GAA gene + 47729 47801 73 Locate
ndhJ gene − 48461 48937 477 Locate
ndhK gene − 49038 49889 852 Locate
ndhC gene − 49769 50131 363 Locate
trnV-UAC gene − 50995 51658 664 Locate
trnM-CAU gene + 51839 51911 73 Locate
atpE gene − 52037 52459 423 Locate
atpB gene − 52456 53952 1497 Locate
rbcL gene + 54692 56161 1470 Locate
accD gene + 56767 58305 1539 Locate
psaI gene + 59018 59128 111 Locate
ycf4 gene + 59538 60092 555 Locate
cemA gene + 60738 61427 690 Locate
petA gene + 61640 62602 963 Locate
psbJ gene − 63560 63682 123 Locate
psbL gene − 63824 63940 117 Locate
psbF gene − 63964 64083 120 Locate
psbE gene − 64098 64349 252 Locate
petL gene + 65254 65349 96 Locate
petG gene + 65524 65637 114 Locate
trnW-CCA gene − 65760 65833 74 Locate
trnP-UGG gene − 66003 66076 74 Locate
psaJ gene + 66365 66499 135 Locate
rpl33 gene + 66963 67163 201 Locate
rps18 gene + 67329 67634 306 Locate
rpl20 gene − 67871 68257 387 Locate
rps12 gene − 69073 69186 114 Locate
clpP gene − 69323 71243 1921 Locate
psbB gene + 71689 73215 1527 Locate
psbT gene + 73410 73517 108 Locate
psbN gene − 73578 73709 132 Locate
psbH gene + 73815 74036 222 Locate
petB gene + 74157 75516 1360 Locate
petD gene + 75705 76920 1216 Locate
rpoA gene − 77097 78116 1020 Locate
rps11 gene − 78188 78604 417 Locate
rpl36 gene − 78707 78820 114 Locate
infA gene − 78916 79149 234 Locate
rps8 gene − 79274 79678 405 Locate
rpl14 gene − 79854 80222 369 Locate
rpl16 gene − 80349 81626 1278 Locate
rps3 gene − 81784 82434 651 Locate
rpl22 gene − 82419 82886 468 Locate
rps19 gene − 82942 83220 279 Locate
rpl2 gene − 83274 84765 1492 Locate
rpl23 gene − 84784 85065 282 Locate
trnI-CAU gene − 85231 85304 74 Locate
ycf2 gene + 85393 92232 6840 Locate
ycf15 gene + 92323 92571 249 Locate
trnL-CAA gene − 92839 92919 81 Locate
ndhB gene − 93466 95677 2212 Locate
rps7 gene − 95952 96419 468 Locate
rps12 gene − 96473 97269 797 Locate
trnV-GAC gene + 98868 98939 72 Locate
rrn16 gene + 99167 100657 1491 Locate
trnI-GAU gene + 100956 101976 1021 Locate
trnA-UGC gene + 102041 102921 881 Locate
rrn23 gene + 103083 105899 2817 Locate
rrn4.5 gene + 106000 106102 103 Locate
rrn5 gene + 106332 106452 121 Locate
trnR-ACG gene + 106697 106770 74 Locate
trnN-GUU gene − 107325 107396 72 Locate
ndhF gene − 108736 111021 2286 Locate
rpl32 gene + 111576 111752 177 Locate
trnL-UAG gene + 112165 112244 80 Locate
ccsA gene + 112332 113303 972 Locate
ndhD gene − 113552 115081 1530 Locate
psaC gene − 115173 115418 246 Locate
ndhE gene − 115669 115974 306 Locate
ndhG gene − 116176 116706 531 Locate
ndhI gene − 117033 117539 507 Locate
ndhA gene − 117615 119621 2007 Locate
ndhH gene − 119623 120858 1236 Locate
rps15 gene − 120901 121173 273 Locate
ycf1 gene − 121561 127251 5691 Locate
trnN-GUU gene + 127470 127541 72 Locate
trnR-ACG gene − 128096 128169 74 Locate
rrn5 gene − 128414 128534 121 Locate
rrn4.5 gene − 128764 128866 103 Locate
rrn23 gene − 128967 131783 2817 Locate
trnA-UGC gene − 131945 132825 881 Locate
trnI-GAU gene − 132890 133910 1021 Locate
rrn16 gene − 134209 135699 1491 Locate
trnV-GAC gene − 135927 135998 72 Locate
rps12 gene + 137597 138393 797 Locate
rps7 gene + 138447 138914 468 Locate
ndhB gene + 139189 141400 2212 Locate
trnL-CAA gene + 141947 142027 81 Locate
ycf15 gene − 142295 142543 249 Locate
ycf2 gene − 142634 149473 6840 Locate
trnI-CAU gene + 149562 149635 74 Locate
rpl23 gene + 149801 150082 282 Locate
rpl2 gene + 150101 151592 1492 Locate
Status Available
Accession NC_046409.1
Length 151,687 bp
GC content 38.2%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources