Coordinate-aware organelle record

Caryopteris incana chloroplast genome

Available NC_046409.1 151,687 bp 132 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

132 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	1	75	74
psbA	gene	photosystem-ii	−	297	1356	1059
trnK-UUU	gene	translation-rna	−	1588	4165	2577
matK	gene	other	−	1889	3425	1536
rps16	gene	ribosomal-protein	−	5039	6210	1171
trnQ-UUG	gene	translation-rna	−	7409	7481	72
psbK	gene	photosystem-ii	+	7801	7996	195
psbI	gene	photosystem-ii	+	8207	8318	111
trnS-GCU	gene	translation-rna	−	8438	8526	88
trnG-UCC	gene	translation-rna	+	9176	9936	760
trnR-UCU	gene	translation-rna	+	10073	10145	72
atpA	gene	atp-synthase	−	10253	11777	1524
atpF	gene	atp-synthase	−	11878	13114	1236
atpH	gene	atp-synthase	−	13489	13735	246
atpI	gene	atp-synthase	−	14766	15510	744
rps2	gene	ribosomal-protein	−	15742	16579	837
rpoC2	gene	rna-polymerase	−	16651	20785	4134
rpoC1	gene	rna-polymerase	−	20951	23774	2823
rpoB	gene	rna-polymerase	−	23800	27013	3213
trnC-GCA	gene	translation-rna	+	28165	28236	71
petN	gene	cytochrome	+	28969	29059	90
psbM	gene	photosystem-ii	−	29702	29807	105
trnD-GUC	gene	translation-rna	−	30330	30404	74
trnY-GUA	gene	translation-rna	−	30511	30595	84
trnE-UUC	gene	translation-rna	−	30654	30727	73
trnT-GGU	gene	translation-rna	+	31265	31337	72
psbD	gene	photosystem-ii	+	32664	33726	1062
psbC	gene	photosystem-ii	+	33673	35095	1422
trnS-UGA	gene	translation-rna	−	35348	35441	93
psbZ	gene	photosystem-ii	+	35760	35949	189
trnG-GCC	gene	translation-rna	+	36218	36289	71
trnfM-CAU	gene	translation-rna	−	36459	36533	74
rps14	gene	ribosomal-protein	−	36677	36980	303
psaB	gene	photosystem-i	−	37104	39309	2205
psaA	gene	photosystem-i	−	39334	41587	2253
ycf3	gene	other	−	42324	44263	1939
trnS-GGA	gene	translation-rna	+	44737	44824	87
rps4	gene	ribosomal-protein	−	45125	45728	603
trnT-UGU	gene	translation-rna	−	46089	46162	73
trnL-UAA	gene	translation-rna	+	46862	47434	572
trnF-GAA	gene	translation-rna	+	47728	47801	73
ndhJ	gene	nad-dehydrogenase	−	48460	48937	477
ndhK	gene	nad-dehydrogenase	−	49037	49889	852
ndhC	gene	nad-dehydrogenase	−	49768	50131	363
trnV-UAC	gene	translation-rna	−	50994	51658	664
trnM-CAU	gene	translation-rna	+	51838	51911	73
atpE	gene	atp-synthase	−	52036	52459	423
atpB	gene	atp-synthase	−	52455	53952	1497
rbcL	gene	other	+	54691	56161	1470
accD	gene	other	+	56766	58305	1539
psaI	gene	photosystem-i	+	59017	59128	111
ycf4	gene	other	+	59537	60092	555
cemA	gene	other	+	60737	61427	690
petA	gene	cytochrome	+	61639	62602	963
psbJ	gene	photosystem-ii	−	63559	63682	123
psbL	gene	photosystem-ii	−	63823	63940	117
psbF	gene	photosystem-ii	−	63963	64083	120
psbE	gene	photosystem-ii	−	64097	64349	252
petL	gene	cytochrome	+	65253	65349	96
petG	gene	cytochrome	+	65523	65637	114
trnW-CCA	gene	translation-rna	−	65759	65833	74
trnP-UGG	gene	translation-rna	−	66002	66076	74
psaJ	gene	photosystem-i	+	66364	66499	135
rpl33	gene	ribosomal-protein	+	66962	67163	201
rps18	gene	ribosomal-protein	+	67328	67634	306
rpl20	gene	ribosomal-protein	−	67870	68257	387
rps12	gene	ribosomal-protein	−	69072	97269	28197
rps12	gene	ribosomal-protein	+	69072	138393	69321
clpP	gene	other	−	69322	71243	1921
psbB	gene	photosystem-ii	+	71688	73215	1527
psbT	gene	photosystem-ii	+	73409	73517	108
psbN	gene	photosystem-ii	−	73577	73709	132
psbH	gene	photosystem-ii	+	73814	74036	222
petB	gene	cytochrome	+	74156	75516	1360
petD	gene	cytochrome	+	75704	76920	1216
rpoA	gene	rna-polymerase	−	77096	78116	1020
rps11	gene	ribosomal-protein	−	78187	78604	417
rpl36	gene	ribosomal-protein	−	78706	78820	114
infA	gene	other	−	78915	79149	234
rps8	gene	ribosomal-protein	−	79273	79678	405
rpl14	gene	ribosomal-protein	−	79853	80222	369
rpl16	gene	ribosomal-protein	−	80348	81626	1278
rps3	gene	ribosomal-protein	−	81783	82434	651
rpl22	gene	ribosomal-protein	−	82418	82886	468
rps19	gene	ribosomal-protein	−	82941	83220	279
rpl2	gene	ribosomal-protein	−	83273	84765	1492
rpl23	gene	ribosomal-protein	−	84783	85065	282
trnI-CAU	gene	translation-rna	−	85230	85304	74
ycf2	gene	other	+	85392	92232	6840
ycf15	gene	other	+	92322	92571	249
trnL-CAA	gene	translation-rna	−	92838	92919	81
ndhB	gene	nad-dehydrogenase	−	93465	95677	2212
rps7	gene	ribosomal-protein	−	95951	96419	468
trnV-GAC	gene	translation-rna	+	98867	98939	72
rrn16	gene	ribosomal-rna	+	99166	100657	1491
trnI-GAU	gene	translation-rna	+	100955	101976	1021
trnA-UGC	gene	translation-rna	+	102040	102921	881
rrn23	gene	ribosomal-rna	+	103082	105899	2817
rrn4.5	gene	ribosomal-rna	+	105999	106102	103
rrn5	gene	ribosomal-rna	+	106331	106452	121
trnR-ACG	gene	translation-rna	+	106696	106770	74
trnN-GUU	gene	translation-rna	−	107324	107396	72
ndhF	gene	nad-dehydrogenase	−	108735	111021	2286
rpl32	gene	ribosomal-protein	+	111575	111752	177
trnL-UAG	gene	translation-rna	+	112164	112244	80
ccsA	gene	other	+	112331	113303	972
ndhD	gene	nad-dehydrogenase	−	113551	115081	1530
psaC	gene	photosystem-i	−	115172	115418	246
ndhE	gene	nad-dehydrogenase	−	115668	115974	306
ndhG	gene	nad-dehydrogenase	−	116175	116706	531
ndhI	gene	nad-dehydrogenase	−	117032	117539	507
ndhA	gene	nad-dehydrogenase	−	117614	119621	2007
ndhH	gene	nad-dehydrogenase	−	119622	120858	1236
rps15	gene	ribosomal-protein	−	120900	121173	273
ycf1	gene	other	−	121560	127251	5691
trnN-GUU	gene	translation-rna	+	127469	127541	72
trnR-ACG	gene	translation-rna	−	128095	128169	74
rrn5	gene	ribosomal-rna	−	128413	128534	121
rrn4.5	gene	ribosomal-rna	−	128763	128866	103
rrn23	gene	ribosomal-rna	−	128966	131783	2817
trnA-UGC	gene	translation-rna	−	131944	132825	881
trnI-GAU	gene	translation-rna	−	132889	133910	1021
rrn16	gene	ribosomal-rna	−	134208	135699	1491
trnV-GAC	gene	translation-rna	−	135926	135998	72
rps7	gene	ribosomal-protein	+	138446	138914	468
ndhB	gene	nad-dehydrogenase	+	139188	141400	2212
trnL-CAA	gene	translation-rna	+	141946	142027	81
ycf15	gene	other	−	142294	142543	249
ycf2	gene	other	−	142633	149473	6840
trnI-CAU	gene	translation-rna	+	149561	149635	74
rpl23	gene	ribosomal-protein	+	149800	150082	282
rpl2	gene	ribosomal-protein	+	150100	151592	1492

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeNC_046409.1DNA · accDNC_046409DNA · atpBNC_046409DNA · matKNC_046409DNA · ndhFNC_046409DNA · psbANC_046409DNA · rbcLNC_046409DNA · rps12NC_046409DNA · ycf1NC_046409