Caryopteris trichosphaera chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnR-UCU · MN814860.1 · 1,633–1,704 bp · −
trnG-UCC · MN814860.1 · 1,840–2,599 bp · −
psbI · MN814860.1 · 3,499–3,609 bp · −
psbK · MN814860.1 · 3,822–4,007 bp · −
rpl2 · MN814860.1 · 11,638–13,129 bp · −
rpl23 · MN814860.1 · 13,148–13,429 bp · −
trnI-CAU · MN814860.1 · 13,595–13,668 bp · −
trnL-CAA · MN814860.1 · 21,185–21,265 bp · −
ndhB · MN814860.1 · 21,812–24,023 bp · −
rps7 · MN814860.1 · 24,298–24,765 bp · −
rps12 · MN814860.1 · 24,819–25,615 bp · −
rrn16 · MN814860.1 · 27,513–29,002 bp · −
trnN-GUU · MN814860.1 · 35,678–35,749 bp · −
ccsA · MN814860.1 · 49,928–50,899 bp · −
trnL-UAG · MN814860.1 · 50,984–51,063 bp · −
rpl32 · MN814860.1 · 51,476–51,652 bp · −
ycf1 · MN814860.1 · 54,369–55,478 bp · −
trnR-ACG · MN814860.1 · 56,453–56,526 bp · −
rrn5 · MN814860.1 · 56,771–56,891 bp · −
rrn4.5 · MN814860.1 · 57,121–57,223 bp · −
rrn23 · MN814860.1 · 57,325–60,140 bp · −
trnA-UGC · MN814860.1 · 60,302–61,182 bp · −
trnI-GAU · MN814860.1 · 61,247–62,267 bp · −
rrn16 · MN814860.1 · 62,567–64,056 bp · −
trnV-GAC · MN814860.1 · 64,284–64,355 bp · −
ycf2 · MN814860.1 · 70,991–77,812 bp · −
petD · MN814860.1 · 86,284–87,498 bp · −
psbH · MN814860.1 · 89,164–89,385 bp · −
psbT · MN814860.1 · 89,683–89,790 bp · −
psbB · MN814860.1 · 89,984–91,510 bp · −
rps18 · MN814860.1 · 95,576–95,881 bp · −
rpl33 · MN814860.1 · 96,047–96,247 bp · −
psaJ · MN814860.1 · 96,704–96,838 bp · −
petG · MN814860.1 · 97,571–97,684 bp · −
petL · MN814860.1 · 97,859–97,954 bp · −
petA · MN814860.1 · 100,594–101,556 bp · −
cemA · MN814860.1 · 101,769–102,458 bp · −
ycf4 · MN814860.1 · 103,104–103,658 bp · −
psaI · MN814860.1 · 104,069–104,179 bp · −
accD · MN814860.1 · 104,891–106,429 bp · −
rbcL · MN814860.1 · 107,013–108,461 bp · −
trnM-CAU · MN814860.1 · 111,301–111,373 bp · −
trnP-GAA · MN814860.1 · 115,412–115,484 bp · −
trnL-UAA · MN814860.1 · 115,779–116,345 bp · −
trnS-GGA · MN814860.1 · 118,381–118,467 bp · −
trnG-GCC · MN814860.1 · 126,850–126,920 bp · −
psbZ · MN814860.1 · 127,189–127,377 bp · −
psbC · MN814860.1 · 128,043–129,464 bp · −
psbD · MN814860.1 · 129,412–130,473 bp · −
trnT-GGU · MN814860.1 · 131,805–131,876 bp · −
petN · MN814860.1 · 134,117–134,206 bp · −
trnC-GCA · MN814860.1 · 134,935–135,005 bp · −
atpA · MN814860.1 · 1–1,524 bp · +
trnS-GCU · MN814860.1 · 3,291–3,378 bp · +
trnQ-UUG · MN814860.1 · 4,337–4,408 bp · +
rps16 · MN814860.1 · 5,329–6,496 bp · +
trnK-UUU · MN814860.1 · 7,361–9,936 bp · +
matK · MN814860.1 · 8,100–9,635 bp · +
psbA · MN814860.1 · 10,169–11,227 bp · +
trnH-GUG · MN814860.1 · 11,468–11,541 bp · +
ycf2 · MN814860.1 · 13,757–20,578 bp · +
rps12 · MN814860.1 · 94,022–94,135 bp · +
trnV-GAC · MN814860.1 · 27,214–27,285 bp · +
trnI-GAU · MN814860.1 · 29,302–30,322 bp · +
trnA-UGC · MN814860.1 · 30,387–31,267 bp · +
rrn23 · MN814860.1 · 31,429–34,244 bp · +
rrn4.5 · MN814860.1 · 34,346–34,448 bp · +
rrn5 · MN814860.1 · 34,678–34,798 bp · +
trnR-ACG · MN814860.1 · 35,043–35,116 bp · +
ycf1 · MN814860.1 · 36,091–41,658 bp · +
rps15 · MN814860.1 · 42,065–42,337 bp · +
ndhH · MN814860.1 · 42,434–43,615 bp · +
ndhI · MN814860.1 · 45,698–46,204 bp · +
ndhG · MN814860.1 · 46,531–47,061 bp · +
ndhE · MN814860.1 · 47,263–47,568 bp · +
psaC · MN814860.1 · 47,794–48,039 bp · +
ndhD · MN814860.1 · 48,158–49,660 bp · +
ndhF · MN814860.1 · 52,195–54,480 bp · +
trnN-GUU · MN814860.1 · 55,820–55,891 bp · +
rps12 · MN814860.1 · 65,954–66,750 bp · +
rps7 · MN814860.1 · 66,804–67,271 bp · +
ndhB · MN814860.1 · 67,546–69,757 bp · +
trnL-CAA · MN814860.1 · 70,304–70,384 bp · +
trnI-CAU · MN814860.1 · 77,901–77,974 bp · +
rpl23 · MN814860.1 · 78,140–78,421 bp · +
rpl2 · MN814860.1 · 78,440–79,931 bp · +
rps19 · MN814860.1 · 79,985–80,263 bp · +
rpl22 · MN814860.1 · 80,319–80,786 bp · +
rps3 · MN814860.1 · 80,771–81,421 bp · +
rpl14 · MN814860.1 · 82,982–83,350 bp · +
rps8 · MN814860.1 · 83,526–83,930 bp · +
infA · MN814860.1 · 84,055–84,288 bp · +
rpl36 · MN814860.1 · 84,384–84,497 bp · +
rps11 · MN814860.1 · 84,600–85,016 bp · +
rpoA · MN814860.1 · 85,088–86,107 bp · +
psbN · MN814860.1 · 89,491–89,622 bp · +
clpP · MN814860.1 · 91,956–93,879 bp · +
rpl20 · MN814860.1 · 94,953–95,339 bp · +
trnP-UGG · MN814860.1 · 97,115–97,188 bp · +
trnW-CCA · MN814860.1 · 97,375–97,448 bp · +
psbE · MN814860.1 · 98,855–99,106 bp · +
psbF · MN814860.1 · 99,121–99,240 bp · +
psbL · MN814860.1 · 99,264–99,380 bp · +
psbJ · MN814860.1 · 99,522–99,644 bp · +
atpB · MN814860.1 · 109,239–110,735 bp · +
atpE · MN814860.1 · 110,732–111,154 bp · +
trnV-UAC · MN814860.1 · 111,554–112,218 bp · +
ndhC · MN814860.1 · 113,082–113,444 bp · +
ndhK · MN814860.1 · 113,498–114,175 bp · +
ndhJ · MN814860.1 · 114,276–114,752 bp · +
trnT-UGU · MN814860.1 · 117,043–117,115 bp · +
rps4 · MN814860.1 · 117,477–118,079 bp · +
ycf3 · MN814860.1 · 118,922–120,855 bp · +
psaA · MN814860.1 · 121,552–123,804 bp · +
psaB · MN814860.1 · 123,830–126,034 bp · +
rps14 · MN814860.1 · 126,159–126,461 bp · +
trnM-CAU · MN814860.1 · 126,606–126,679 bp · +
trnS-UGA · MN814860.1 · 127,697–127,789 bp · +
trnE-UUC · MN814860.1 · 132,442–132,514 bp · +
trnY-GUA · MN814860.1 · 132,574–132,657 bp · +
trnD-GUC · MN814860.1 · 132,765–132,838 bp · +
psbM · MN814860.1 · 133,369–133,473 bp · +
rpoB · MN814860.1 · 136,158–139,370 bp · +
rpoC1 · MN814860.1 · 139,397–142,224 bp · +
rpoC2 · MN814860.1 · 142,391–146,500 bp · +
rps2 · MN814860.1 · 146,724–147,434 bp · +
atpI · MN814860.1 · 147,667–148,410 bp · +
atpH · MN814860.1 · 149,422–149,667 bp · +
atpF · MN814860.1 · 150,044–151,279 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Caryopteris trichosphaera
ANNOTATED PLASTOME
MN814860.1
151,380 bp · 128 genes
Gene function
ATP synthase
Transfer RNA
Photosystem II
Ribosomal protein
Other
NADH dehydrogenase
Ribosomal RNA
Photosystem I
RNA polymerase
Cytochrome
0 37845 75690 113535 151380 bp
Forward strand 5′ → 3′
atpA trnS-GCU trnQ-UUG rps16 trnK-UUU matK psbA trnH-GUG ycf2 trnV-GAC trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rps15 ndhH ndhI ndhG ndhE psaC ndhD ndhF trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19 rpl22 rps3 rpl14 rps8 infA rpl36 rps11 rpoA psbN clpP rps12 rpl20 trnP-UGG trnW-CCA psbE psbF psbL psbJ atpB atpE trnV-UAC ndhC ndhK ndhJ trnT-UGU rps4 ycf3 psaA psaB rps14 trnM-CAU trnS-UGA trnE-UUC trnY-GUA trnD-GUC psbM rpoB rpoC1 rpoC2 rps2 atpI atpH atpF
trnR-UCU trnG-UCC psbI psbK rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn16 trnN-GUU ccsA trnL-UAG rpl32 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2 petD psbH psbT psbB rps18 rpl33 psaJ petG petL petA cemA ycf4 psaI accD rbcL trnM-CAU trnP-GAA trnL-UAA trnS-GGA trnG-GCC psbZ psbC psbD trnT-GGU petN trnC-GCA
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
129 local segments
Gene Type Group Strand Start End Length
atpA gene + 1 1524 1524 Locate
trnR-UCU gene − 1633 1704 72 Locate
trnG-UCC gene − 1840 2599 760 Locate
trnS-GCU gene + 3291 3378 88 Locate
psbI gene − 3499 3609 111 Locate
psbK gene − 3822 4007 186 Locate
trnQ-UUG gene + 4337 4408 72 Locate
rps16 gene + 5329 6496 1168 Locate
trnK-UUU gene + 7361 9936 2576 Locate
matK gene + 8100 9635 1536 Locate
psbA gene + 10169 11227 1059 Locate
trnH-GUG gene + 11468 11541 74 Locate
rpl2 gene − 11638 13129 1492 Locate
rpl23 gene − 13148 13429 282 Locate
trnI-CAU gene − 13595 13668 74 Locate
ycf2 gene + 13757 20578 6822 Locate
trnL-CAA gene − 21185 21265 81 Locate
ndhB gene − 21812 24023 2212 Locate
rps7 gene − 24298 24765 468 Locate
rps12 gene − 24819 25615 797 Locate
trnV-GAC gene + 27214 27285 72 Locate
rrn16 gene − 27513 29002 1490 Locate
trnI-GAU gene + 29302 30322 1021 Locate
trnA-UGC gene + 30387 31267 881 Locate
rrn23 gene + 31429 34244 2816 Locate
rrn4.5 gene + 34346 34448 103 Locate
rrn5 gene + 34678 34798 121 Locate
trnR-ACG gene + 35043 35116 74 Locate
trnN-GUU gene − 35678 35749 72 Locate
ycf1 gene + 36091 41658 5568 Locate
rps15 gene + 42065 42337 273 Locate
ndhH gene + 42434 43615 1182 Locate
ndhI gene + 45698 46204 507 Locate
ndhG gene + 46531 47061 531 Locate
ndhE gene + 47263 47568 306 Locate
psaC gene + 47794 48039 246 Locate
ndhD gene + 48158 49660 1503 Locate
ccsA gene − 49928 50899 972 Locate
trnL-UAG gene − 50984 51063 80 Locate
rpl32 gene − 51476 51652 177 Locate
ndhF gene + 52195 54480 2286 Locate
ycf1 gene − 54369 55478 1110 Locate
trnN-GUU gene + 55820 55891 72 Locate
trnR-ACG gene − 56453 56526 74 Locate
rrn5 gene − 56771 56891 121 Locate
rrn4.5 gene − 57121 57223 103 Locate
rrn23 gene − 57325 60140 2816 Locate
trnA-UGC gene − 60302 61182 881 Locate
trnI-GAU gene − 61247 62267 1021 Locate
rrn16 gene − 62567 64056 1490 Locate
trnV-GAC gene − 64284 64355 72 Locate
rps12 gene + 65954 66750 797 Locate
rps7 gene + 66804 67271 468 Locate
ndhB gene + 67546 69757 2212 Locate
trnL-CAA gene + 70304 70384 81 Locate
ycf2 gene − 70991 77812 6822 Locate
trnI-CAU gene + 77901 77974 74 Locate
rpl23 gene + 78140 78421 282 Locate
rpl2 gene + 78440 79931 1492 Locate
rps19 gene + 79985 80263 279 Locate
rpl22 gene + 80319 80786 468 Locate
rps3 gene + 80771 81421 651 Locate
rpl14 gene + 82982 83350 369 Locate
rps8 gene + 83526 83930 405 Locate
infA gene + 84055 84288 234 Locate
rpl36 gene + 84384 84497 114 Locate
rps11 gene + 84600 85016 417 Locate
rpoA gene + 85088 86107 1020 Locate
petD gene − 86284 87498 1215 Locate
psbH gene − 89164 89385 222 Locate
psbN gene + 89491 89622 132 Locate
psbT gene − 89683 89790 108 Locate
psbB gene − 89984 91510 1527 Locate
clpP gene + 91956 93879 1924 Locate
rps12 gene + 94022 94135 114 Locate
rpl20 gene + 94953 95339 387 Locate
rps18 gene − 95576 95881 306 Locate
rpl33 gene − 96047 96247 201 Locate
psaJ gene − 96704 96838 135 Locate
trnP-UGG gene + 97115 97188 74 Locate
trnW-CCA gene + 97375 97448 74 Locate
petG gene − 97571 97684 114 Locate
petL gene − 97859 97954 96 Locate
psbE gene + 98855 99106 252 Locate
psbF gene + 99121 99240 120 Locate
psbL gene + 99264 99380 117 Locate
psbJ gene + 99522 99644 123 Locate
petA gene − 100594 101556 963 Locate
cemA gene − 101769 102458 690 Locate
ycf4 gene − 103104 103658 555 Locate
psaI gene − 104069 104179 111 Locate
accD gene − 104891 106429 1539 Locate
rbcL gene − 107013 108461 1449 Locate
atpB gene + 109239 110735 1497 Locate
atpE gene + 110732 111154 423 Locate
trnM-CAU gene − 111301 111373 73 Locate
trnV-UAC gene + 111554 112218 665 Locate
ndhC gene + 113082 113444 363 Locate
ndhK gene + 113498 114175 678 Locate
ndhJ gene + 114276 114752 477 Locate
trnP-GAA gene − 115412 115484 73 Locate
trnL-UAA gene − 115779 116345 567 Locate
trnT-UGU gene + 117043 117115 73 Locate
rps4 gene + 117477 118079 603 Locate
trnS-GGA gene − 118381 118467 87 Locate
ycf3 gene + 118922 120855 1934 Locate
psaA gene + 121552 123804 2253 Locate
psaB gene + 123830 126034 2205 Locate
rps14 gene + 126159 126461 303 Locate
trnM-CAU gene + 126606 126679 74 Locate
trnG-GCC gene − 126850 126920 71 Locate
psbZ gene − 127189 127377 189 Locate
trnS-UGA gene + 127697 127789 93 Locate
psbC gene − 128043 129464 1422 Locate
psbD gene − 129412 130473 1062 Locate
trnT-GGU gene − 131805 131876 72 Locate
trnE-UUC gene + 132442 132514 73 Locate
trnY-GUA gene + 132574 132657 84 Locate
trnD-GUC gene + 132765 132838 74 Locate
psbM gene + 133369 133473 105 Locate
petN gene − 134117 134206 90 Locate
trnC-GCA gene − 134935 135005 71 Locate
rpoB gene + 136158 139370 3213 Locate
rpoC1 gene + 139397 142224 2828 Locate
rpoC2 gene + 142391 146500 4110 Locate
rps2 gene + 146724 147434 711 Locate
atpI gene + 147667 148410 744 Locate
atpH gene + 149422 149667 246 Locate
atpF gene + 150044 151279 1236 Locate
Status Available
Accession MN814860.1
Length 151,380 bp
GC content 38.3%
Annotated genes 128
Gene sequence records 8
Atp Synthase 6 Translation Rna 37 Photosystem Ii 15 Ribosomal Protein 25 Other 13 Nad Dehydrogenase 11 Ribosomal Rna 8 Photosystem I 5 Rna Polymerase 4 Cytochrome 5
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources