Clerodendrum japonicum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_056260.1 · 3–76 bp · −
psbA · NC_056260.1 · 243–1,301 bp · −
trnK-UUU · NC_056260.1 · 1,517–4,090 bp · −
matK · NC_056260.1 · 1,809–3,344 bp · −
rps16 · NC_056260.1 · 4,732–5,880 bp · −
trnQ-UUG · NC_056260.1 · 7,143–7,214 bp · −
trnS-GCU · NC_056260.1 · 8,406–8,493 bp · −
atpA · NC_056260.1 · 10,286–11,809 bp · −
atpF · NC_056260.1 · 11,913–13,134 bp · −
atpH · NC_056260.1 · 13,514–13,759 bp · −
atpI · NC_056260.1 · 14,783–15,526 bp · −
rps2 · NC_056260.1 · 15,732–16,442 bp · −
rpoC2 · NC_056260.1 · 16,649–20,815 bp · −
rpoC1 · NC_056260.1 · 20,973–23,790 bp · −
rpoB · NC_056260.1 · 23,817–27,029 bp · −
psbM · NC_056260.1 · 29,877–29,981 bp · −
trnD-GUC · NC_056260.1 · 30,495–30,568 bp · −
trnY-GUA · NC_056260.1 · 30,686–30,769 bp · −
trnE-UUC · NC_056260.1 · 30,829–30,901 bp · −
trnS-UGA · NC_056260.1 · 35,395–35,487 bp · −
trnM-CAU · NC_056260.1 · 36,458–36,531 bp · −
rps14 · NC_056260.1 · 36,676–36,978 bp · −
psaB · NC_056260.1 · 37,105–39,309 bp · −
psaA · NC_056260.1 · 39,335–41,587 bp · −
ycf3 · NC_056260.1 · 42,390–44,258 bp · −
rps4 · NC_056260.1 · 45,359–45,964 bp · −
trnT-UGU · NC_056260.1 · 46,349–46,421 bp · −
ndhJ · NC_056260.1 · 48,661–49,137 bp · −
ndhK · NC_056260.1 · 49,238–49,915 bp · −
ndhC · NC_056260.1 · 49,969–50,331 bp · −
trnV-UAC · NC_056260.1 · 51,179–51,842 bp · −
atpE · NC_056260.1 · 52,327–52,728 bp · −
atpB · NC_056260.1 · 52,725–54,221 bp · −
psbJ · NC_056260.1 · 63,764–63,886 bp · −
psbL · NC_056260.1 · 64,020–64,136 bp · −
psbF · NC_056260.1 · 64,160–64,279 bp · −
psbE · NC_056260.1 · 64,294–64,545 bp · −
trnW-CCA · NC_056260.1 · 65,965–66,038 bp · −
trnP-UGG · NC_056260.1 · 66,201–66,274 bp · −
rpsl20 · NC_056260.1 · 68,067–68,453 bp · −
rps12 · NC_056260.1 · 69,291–69,404 bp · −
rps12 · NC_056260.1 · 96,750–97,546 bp · −
clpP · NC_056260.1 · 69,533–71,485 bp · −
psbN · NC_056260.1 · 73,802–73,933 bp · −
rpoA · NC_056260.1 · 77,361–78,374 bp · −
rps11 · NC_056260.1 · 78,460–78,876 bp · −
rpl36 · NC_056260.1 · 78,978–79,091 bp · −
infA · NC_056260.1 · 79,188–79,421 bp · −
rps8 · NC_056260.1 · 79,547–79,951 bp · −
rpl14 · NC_056260.1 · 80,116–80,484 bp · −
rpl16 · NC_056260.1 · 80,601–81,864 bp · −
rps3 · NC_056260.1 · 82,014–82,670 bp · −
rpl22 · NC_056260.1 · 82,655–83,122 bp · −
rps19 · NC_056260.1 · 83,178–83,456 bp · −
rpl2 · NC_056260.1 · 83,510–85,001 bp · −
rpl23 · NC_056260.1 · 85,020–85,301 bp · −
trnI-CAU · NC_056260.1 · 85,467–85,540 bp · −
trnL-CAA · NC_056260.1 · 93,104–93,184 bp · −
ndhB · NC_056260.1 · 93,743–95,954 bp · −
rps7 · NC_056260.1 · 96,229–96,696 bp · −
rrn16 · NC_056260.1 · 99,432–100,921 bp · −
trnN-GUU · NC_056260.1 · 107,620–107,691 bp · −
ndhF · NC_056260.1 · 109,141–111,375 bp · −
ndhD · NC_056260.1 · 113,943–115,472 bp · −
psaC · NC_056260.1 · 115,573–115,818 bp · −
ndhE · NC_056260.1 · 116,069–116,374 bp · −
ndhG · NC_056260.1 · 116,586–117,116 bp · −
ndhI · NC_056260.1 · 117,469–117,975 bp · −
ndhA · NC_056260.1 · 118,056–120,065 bp · −
ndhH · NC_056260.1 · 120,067–121,248 bp · −
rps15 · NC_056260.1 · 121,345–121,617 bp · −
ycf1 · NC_056260.1 · 121,988–127,555 bp · −
trnR-ACG · NC_056260.1 · 128,532–128,605 bp · −
rrn5 · NC_056260.1 · 128,847–128,967 bp · −
rrn4.5 · NC_056260.1 · 129,228–129,330 bp · −
rrn23 · NC_056260.1 · 129,432–132,238 bp · −
trnA-UGC · NC_056260.1 · 132,403–133,282 bp · −
trnI-GAU · NC_056260.1 · 133,347–134,368 bp · −
trnV-GAC · NC_056260.1 · 136,384–136,455 bp · −
ycf15 · NC_056260.1 · 142,757–143,011 bp · −
ycf2 · NC_056260.1 · 143,102–149,959 bp · −
psbK · NC_056260.1 · 7,575–7,760 bp · +
psbI · NC_056260.1 · 8,168–8,278 bp · +
trnG-UCC · NC_056260.1 · 9,156–9,925 bp · +
trnR-UCU · NC_056260.1 · 10,110–10,181 bp · +
trnC-GCA · NC_056260.1 · 28,239–28,309 bp · +
petN · NC_056260.1 · 28,869–28,958 bp · +
trnT-GGU · NC_056260.1 · 31,460–31,531 bp · +
psbD · NC_056260.1 · 32,702–33,763 bp · +
psbC · NC_056260.1 · 33,711–35,132 bp · +
psbZ · NC_056260.1 · 35,814–36,002 bp · +
trnG-GCC · NC_056260.1 · 36,218–36,288 bp · +
trnS-GGA · NC_056260.1 · 44,953–45,039 bp · +
trnL-UAA · NC_056260.1 · 47,112–47,670 bp · +
trnP-GAA · NC_056260.1 · 47,961–48,033 bp · +
trnM-CAU · NC_056260.1 · 52,023–52,095 bp · +
rbcL · NC_056260.1 · 55,014–56,453 bp · +
accD · NC_056260.1 · 57,123–58,655 bp · +
psaI · NC_056260.1 · 59,261–59,371 bp · +
ycf4 · NC_056260.1 · 59,793–60,347 bp · +
cemA · NC_056260.1 · 61,007–61,696 bp · +
petA · NC_056260.1 · 61,906–62,868 bp · +
petL · NC_056260.1 · 65,457–65,552 bp · +
petG · NC_056260.1 · 65,730–65,843 bp · +
psaJ · NC_056260.1 · 66,554–66,688 bp · +
rpl33 · NC_056260.1 · 67,154–67,354 bp · +
rps18 · NC_056260.1 · 67,526–67,831 bp · +
rps12 · NC_056260.1 · 138,042–138,838 bp · +
psbB · NC_056260.1 · 71,930–73,456 bp · +
psbT · NC_056260.1 · 73,634–73,741 bp · +
psbH · NC_056260.1 · 74,039–74,260 bp · +
petB · NC_056260.1 · 74,383–75,766 bp · +
petD · NC_056260.1 · 75,954–77,171 bp · +
ycf2 · NC_056260.1 · 85,629–92,486 bp · +
ycf15 · NC_056260.1 · 92,577–92,831 bp · +
trnV-GAC · NC_056260.1 · 99,133–99,204 bp · +
trnI-GAU · NC_056260.1 · 101,220–102,241 bp · +
trnA-UGC · NC_056260.1 · 102,306–103,185 bp · +
rrn23 · NC_056260.1 · 103,350–106,156 bp · +
rrn4.5 · NC_056260.1 · 106,258–106,360 bp · +
rrn5 · NC_056260.1 · 106,621–106,741 bp · +
trnR-ACG · NC_056260.1 · 106,983–107,056 bp · +
ycf1 · NC_056260.1 · 108,033–109,151 bp · +
rpl32 · NC_056260.1 · 111,929–112,105 bp · +
trnL-UAG · NC_056260.1 · 112,562–112,641 bp · +
ccsA · NC_056260.1 · 112,742–113,698 bp · +
trnN-GUU · NC_056260.1 · 127,897–127,968 bp · +
rrn16 · NC_056260.1 · 134,667–136,156 bp · +
rps7 · NC_056260.1 · 138,892–139,359 bp · +
ndhB · NC_056260.1 · 139,634–141,845 bp · +
trnL-CAA · NC_056260.1 · 142,404–142,484 bp · +
trnI-CAU · NC_056260.1 · 150,048–150,121 bp · +
rpl23 · NC_056260.1 · 150,287–150,568 bp · +
rpl2 · NC_056260.1 · 150,587–152,078 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clerodendrum japonicum
ANNOTATED PLASTOME
NC_056260.1
152,171 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38043 76086 114128 152171 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnP-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rrn16 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpsl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn16 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 243 1301 1059 Locate
trnK-UUU gene − 1517 4090 2574 Locate
matK gene − 1809 3344 1536 Locate
rps16 gene − 4732 5880 1149 Locate
trnQ-UUG gene − 7143 7214 72 Locate
psbK gene + 7575 7760 186 Locate
psbI gene + 8168 8278 111 Locate
trnS-GCU gene − 8406 8493 88 Locate
trnG-UCC gene + 9156 9925 770 Locate
trnR-UCU gene + 10110 10181 72 Locate
atpA gene − 10286 11809 1524 Locate
atpF gene − 11913 13134 1222 Locate
atpH gene − 13514 13759 246 Locate
atpI gene − 14783 15526 744 Locate
rps2 gene − 15732 16442 711 Locate
rpoC2 gene − 16649 20815 4167 Locate
rpoC1 gene − 20973 23790 2818 Locate
rpoB gene − 23817 27029 3213 Locate
trnC-GCA gene + 28239 28309 71 Locate
petN gene + 28869 28958 90 Locate
psbM gene − 29877 29981 105 Locate
trnD-GUC gene − 30495 30568 74 Locate
trnY-GUA gene − 30686 30769 84 Locate
trnE-UUC gene − 30829 30901 73 Locate
trnT-GGU gene + 31460 31531 72 Locate
psbD gene + 32702 33763 1062 Locate
psbC gene + 33711 35132 1422 Locate
trnS-UGA gene − 35395 35487 93 Locate
psbZ gene + 35814 36002 189 Locate
trnG-GCC gene + 36218 36288 71 Locate
trnM-CAU gene − 36458 36531 74 Locate
rps14 gene − 36676 36978 303 Locate
psaB gene − 37105 39309 2205 Locate
psaA gene − 39335 41587 2253 Locate
ycf3 gene − 42390 44258 1869 Locate
trnS-GGA gene + 44953 45039 87 Locate
rps4 gene − 45359 45964 606 Locate
trnT-UGU gene − 46349 46421 73 Locate
trnL-UAA gene + 47112 47670 559 Locate
trnP-GAA gene + 47961 48033 73 Locate
ndhJ gene − 48661 49137 477 Locate
ndhK gene − 49238 49915 678 Locate
ndhC gene − 49969 50331 363 Locate
trnV-UAC gene − 51179 51842 664 Locate
trnM-CAU gene + 52023 52095 73 Locate
atpE gene − 52327 52728 402 Locate
atpB gene − 52725 54221 1497 Locate
rbcL gene + 55014 56453 1440 Locate
accD gene + 57123 58655 1533 Locate
psaI gene + 59261 59371 111 Locate
ycf4 gene + 59793 60347 555 Locate
cemA gene + 61007 61696 690 Locate
petA gene + 61906 62868 963 Locate
psbJ gene − 63764 63886 123 Locate
psbL gene − 64020 64136 117 Locate
psbF gene − 64160 64279 120 Locate
psbE gene − 64294 64545 252 Locate
petL gene + 65457 65552 96 Locate
petG gene + 65730 65843 114 Locate
trnW-CCA gene − 65965 66038 74 Locate
trnP-UGG gene − 66201 66274 74 Locate
psaJ gene + 66554 66688 135 Locate
rpl33 gene + 67154 67354 201 Locate
rps18 gene + 67526 67831 306 Locate
rpsl20 gene − 68067 68453 387 Locate
rps12 gene − 69291 69404 114 Locate
clpP gene − 69533 71485 1953 Locate
psbB gene + 71930 73456 1527 Locate
psbT gene + 73634 73741 108 Locate
psbN gene − 73802 73933 132 Locate
psbH gene + 74039 74260 222 Locate
petB gene + 74383 75766 1384 Locate
petD gene + 75954 77171 1218 Locate
rpoA gene − 77361 78374 1014 Locate
rps11 gene − 78460 78876 417 Locate
rpl36 gene − 78978 79091 114 Locate
infA gene − 79188 79421 234 Locate
rps8 gene − 79547 79951 405 Locate
rpl14 gene − 80116 80484 369 Locate
rpl16 gene − 80601 81864 1264 Locate
rps3 gene − 82014 82670 657 Locate
rpl22 gene − 82655 83122 468 Locate
rps19 gene − 83178 83456 279 Locate
rpl2 gene − 83510 85001 1492 Locate
rpl23 gene − 85020 85301 282 Locate
trnI-CAU gene − 85467 85540 74 Locate
ycf2 gene + 85629 92486 6858 Locate
ycf15 gene + 92577 92831 255 Locate
trnL-CAA gene − 93104 93184 81 Locate
ndhB gene − 93743 95954 2212 Locate
rps7 gene − 96229 96696 468 Locate
rps12 gene − 96750 97546 797 Locate
trnV-GAC gene + 99133 99204 72 Locate
rrn16 gene − 99432 100921 1490 Locate
trnI-GAU gene + 101220 102241 1022 Locate
trnA-UGC gene + 102306 103185 880 Locate
rrn23 gene + 103350 106156 2807 Locate
rrn4.5 gene + 106258 106360 103 Locate
rrn5 gene + 106621 106741 121 Locate
trnR-ACG gene + 106983 107056 74 Locate
trnN-GUU gene − 107620 107691 72 Locate
ycf1 gene + 108033 109151 1119 Locate
ndhF gene − 109141 111375 2235 Locate
rpl32 gene + 111929 112105 177 Locate
trnL-UAG gene + 112562 112641 80 Locate
ccsA gene + 112742 113698 957 Locate
ndhD gene − 113943 115472 1530 Locate
psaC gene − 115573 115818 246 Locate
ndhE gene − 116069 116374 306 Locate
ndhG gene − 116586 117116 531 Locate
ndhI gene − 117469 117975 507 Locate
ndhA gene − 118056 120065 2010 Locate
ndhH gene − 120067 121248 1182 Locate
rps15 gene − 121345 121617 273 Locate
ycf1 gene − 121988 127555 5568 Locate
trnN-GUU gene + 127897 127968 72 Locate
trnR-ACG gene − 128532 128605 74 Locate
rrn5 gene − 128847 128967 121 Locate
rrn4.5 gene − 129228 129330 103 Locate
rrn23 gene − 129432 132238 2807 Locate
trnA-UGC gene − 132403 133282 880 Locate
trnI-GAU gene − 133347 134368 1022 Locate
rrn16 gene + 134667 136156 1490 Locate
trnV-GAC gene − 136384 136455 72 Locate
rps12 gene + 138042 138838 797 Locate
rps7 gene + 138892 139359 468 Locate
ndhB gene + 139634 141845 2212 Locate
trnL-CAA gene + 142404 142484 81 Locate
ycf15 gene − 142757 143011 255 Locate
ycf2 gene − 143102 149959 6858 Locate
trnI-CAU gene + 150048 150121 74 Locate
rpl23 gene + 150287 150568 282 Locate
rpl2 gene + 150587 152078 1492 Locate
Status Available
Accession NC_056260.1
Length 152,171 bp
GC content 38.1%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources