Clerodendrum lindleyi chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH(GUG) · NC_056199.1 · 2–76 bp · −
psbA · NC_056199.1 · 360–1,418 bp · −
trnK(UUU) · NC_056199.1 · 1,634–4,216 bp · −
matK · NC_056199.1 · 1,939–3,474 bp · −
rps16 · NC_056199.1 · 4,789–5,943 bp · −
trnQ(UUG) · NC_056199.1 · 7,210–7,281 bp · −
trnS(GCU) · NC_056199.1 · 8,460–8,547 bp · −
atpA · NC_056199.1 · 10,313–11,836 bp · −
atpF · NC_056199.1 · 11,938–13,165 bp · −
atpH · NC_056199.1 · 13,544–13,789 bp · −
atpI · NC_056199.1 · 14,541–15,284 bp · −
rps2 · NC_056199.1 · 15,452–16,162 bp · −
rpoC2 · NC_056199.1 · 16,372–20,550 bp · −
rpoC1 · NC_056199.1 · 20,705–23,544 bp · −
rpoB · NC_056199.1 · 23,550–26,762 bp · −
psbM · NC_056199.1 · 29,436–29,540 bp · −
trnD(GUC) · NC_056199.1 · 30,068–30,141 bp · −
trnY(GUA) · NC_056199.1 · 30,259–30,342 bp · −
trnE(UUC) · NC_056199.1 · 30,409–30,481 bp · −
trnT(GGU) · NC_056199.1 · 31,025–31,096 bp · −
trnS(UGA) · NC_056199.1 · 34,955–35,047 bp · −
trnfM(CAU) · NC_056199.1 · 36,037–36,110 bp · −
rps14 · NC_056199.1 · 36,255–36,557 bp · −
psaB · NC_056199.1 · 36,680–38,884 bp · −
psaA · NC_056199.1 · 38,910–41,162 bp · −
ycf3 · NC_056199.1 · 41,886–43,835 bp · −
rps4 · NC_056199.1 · 44,903–45,508 bp · −
trnT(UGU) · NC_056199.1 · 45,896–45,968 bp · −
ndhJ · NC_056199.1 · 48,212–48,688 bp · −
ndhK · NC_056199.1 · 48,789–49,466 bp · −
ndhC · NC_056199.1 · 49,521–49,883 bp · −
trnV(UAC) · NC_056199.1 · 50,750–51,412 bp · −
atpE · NC_056199.1 · 51,887–52,288 bp · −
atpB · NC_056199.1 · 52,285–53,781 bp · −
psbJ · NC_056199.1 · 63,321–63,443 bp · −
psbL · NC_056199.1 · 63,577–63,693 bp · −
psbF · NC_056199.1 · 63,717–63,836 bp · −
psbE · NC_056199.1 · 63,851–64,102 bp · −
trnW(CCA) · NC_056199.1 · 65,540–65,613 bp · −
trnP(UGG) · NC_056199.1 · 65,781–65,854 bp · −
rpl20 · NC_056199.1 · 67,680–68,066 bp · −
rps12 · NC_056199.1 · 68,891–69,004 bp · −
rps12 · NC_056199.1 · 96,346–97,142 bp · −
clpP · NC_056199.1 · 69,138–71,096 bp · −
psbN · NC_056199.1 · 73,391–73,522 bp · −
rpoA · NC_056199.1 · 76,966–77,985 bp · −
rps11 · NC_056199.1 · 78,064–78,480 bp · −
rpl36 · NC_056199.1 · 78,582–78,695 bp · −
infA · NC_056199.1 · 78,791–79,024 bp · −
rps8 · NC_056199.1 · 79,149–79,553 bp · −
rpl14 · NC_056199.1 · 79,714–80,082 bp · −
rpl16 · NC_056199.1 · 80,199–81,483 bp · −
rps3 · NC_056199.1 · 81,643–82,299 bp · −
rpl22 · NC_056199.1 · 82,284–82,751 bp · −
rps19 · NC_056199.1 · 82,807–83,085 bp · −
rpl2 · NC_056199.1 · 83,139–84,648 bp · −
rpl23 · NC_056199.1 · 84,649–84,930 bp · −
trnH(CAU) · NC_056199.1 · 85,090–85,163 bp · −
trnL(CAA) · NC_056199.1 · 92,709–92,789 bp · −
ndhB · NC_056199.1 · 93,339–95,550 bp · −
rps7 · NC_056199.1 · 95,825–96,292 bp · −
trnN(GUU) · NC_056199.1 · 107,207–107,278 bp · −
ndhF · NC_056199.1 · 108,708–110,933 bp · −
ndhD · NC_056199.1 · 113,496–115,025 bp · −
psaC · NC_056199.1 · 115,126–115,371 bp · −
ndhE · NC_056199.1 · 115,622–115,927 bp · −
ndhG · NC_056199.1 · 116,158–116,688 bp · −
ndhI · NC_056199.1 · 117,053–117,559 bp · −
ndhA · NC_056199.1 · 117,640–119,647 bp · −
ndhH · NC_056199.1 · 119,649–120,830 bp · −
rps15 · NC_056199.1 · 120,927–121,199 bp · −
ycf1 · NC_056199.1 · 121,565–127,102 bp · −
trnR(ACG) · NC_056199.1 · 128,080–128,152 bp · −
rrn5 · NC_056199.1 · 128,394–128,514 bp · −
rrn4.5 · NC_056199.1 · 128,775–128,877 bp · −
rrn23 · NC_056199.1 · 128,976–131,785 bp · −
trnA(UGC) · NC_056199.1 · 131,947–132,827 bp · −
trnI(GAU) · NC_056199.1 · 132,892–133,911 bp · −
rrn16 · NC_056199.1 · 134,209–135,699 bp · −
trnV(GAC) · NC_056199.1 · 135,927–135,998 bp · −
trnL(CAA) · NC_056199.1 · 141,933–142,013 bp · −
ycf15 · NC_056199.1 · 142,274–142,528 bp · −
ycf2 · NC_056199.1 · 142,619–149,470 bp · −
psbK · NC_056199.1 · 7,645–7,830 bp · +
psbI · NC_056199.1 · 8,233–8,343 bp · +
trnG(UCC) · NC_056199.1 · 9,188–9,952 bp · +
trnR(UCU) · NC_056199.1 · 10,134–10,208 bp · +
trnC(GCA) · NC_056199.1 · 27,958–28,028 bp · +
petN · NC_056199.1 · 28,564–28,653 bp · +
psbD · NC_056199.1 · 32,262–33,323 bp · +
psbC · NC_056199.1 · 33,271–34,692 bp · +
psbZ · NC_056199.1 · 35,379–35,567 bp · +
trnG(GCC) · NC_056199.1 · 35,786–35,856 bp · +
trnS(GGA) · NC_056199.1 · 44,507–44,593 bp · +
trnL(UAA) · NC_056199.1 · 46,649–47,203 bp · +
trnF(GAA) · NC_056199.1 · 47,503–47,575 bp · +
trnM(CAU) · NC_056199.1 · 51,598–51,670 bp · +
rbcL · NC_056199.1 · 54,569–56,008 bp · +
accD · NC_056199.1 · 56,723–58,204 bp · +
psaI · NC_056199.1 · 58,817–58,927 bp · +
ycf4 · NC_056199.1 · 59,350–59,904 bp · +
cemA · NC_056199.1 · 60,560–61,249 bp · +
petA · NC_056199.1 · 61,449–62,411 bp · +
petL · NC_056199.1 · 65,022–65,117 bp · +
petG · NC_056199.1 · 65,299–65,412 bp · +
psaJ · NC_056199.1 · 66,166–66,300 bp · +
rpl33 · NC_056199.1 · 66,772–66,972 bp · +
rps18 · NC_056199.1 · 67,139–67,444 bp · +
rps12 · NC_056199.1 · 137,580–138,376 bp · +
psbB · NC_056199.1 · 71,518–73,044 bp · +
psbT · NC_056199.1 · 73,223–73,330 bp · +
psbH · NC_056199.1 · 73,610–73,849 bp · +
petB · NC_056199.1 · 73,971–75,344 bp · +
petD · NC_056199.1 · 75,559–76,776 bp · +
ycf2 · NC_056199.1 · 85,252–92,103 bp · +
ycf15 · NC_056199.1 · 92,194–92,448 bp · +
trnV(GAC) · NC_056199.1 · 98,724–98,795 bp · +
rrn16 · NC_056199.1 · 99,023–100,513 bp · +
trnI(GAU) · NC_056199.1 · 100,811–101,830 bp · +
trnA(UGC) · NC_056199.1 · 101,895–102,775 bp · +
rrn23 · NC_056199.1 · 102,937–105,746 bp · +
rrn4.5 · NC_056199.1 · 105,845–105,947 bp · +
rrn5 · NC_056199.1 · 106,208–106,328 bp · +
trnR(ACG) · NC_056199.1 · 106,570–106,643 bp · +
ycf1 · NC_056199.1 · 107,620–108,711 bp · +
rpl32 · NC_056199.1 · 111,467–111,643 bp · +
trnL(UAG) · NC_056199.1 · 112,112–112,191 bp · +
ccsA · NC_056199.1 · 112,285–113,238 bp · +
trnN(GUU) · NC_056199.1 · 127,444–127,515 bp · +
rps7 · NC_056199.1 · 138,430–138,897 bp · +
ndhB · NC_056199.1 · 139,172–141,383 bp · +
trnH(CAU) · NC_056199.1 · 149,559–149,632 bp · +
rpl23 · NC_056199.1 · 149,792–150,073 bp · +
rpl2 · NC_056199.1 · 150,092–151,583 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clerodendrum lindleyi
ANNOTATED PLASTOME
NC_056199.1
151,678 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37920 75839 113758 151678 bp
Forward strand 5′ → 3′
psbK psbI trnG(UCC) trnR(UCU) trnC(GCA) petN psbD psbC psbZ trnG(GCC) trnS(GGA) trnL(UAA) trnF(GAA) trnM(CAU) rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV(GAC) rrn16 trnI(GAU) trnA(UGC) rrn23 rrn4.5 rrn5 trnR(ACG) ycf1 rpl32 trnL(UAG) ccsA trnN(GUU) rps12 rps7 ndhB trnH(CAU) rpl23 rpl2
trnH(GUG) psbA trnK(UUU) matK rps16 trnQ(UUG) trnS(GCU) atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD(GUC) trnY(GUA) trnE(UUC) trnT(GGU) trnS(UGA) trnfM(CAU) rps14 psaB psaA ycf3 rps4 trnT(UGU) ndhJ ndhK ndhC trnV(UAC) atpE atpB psbJ psbL psbF psbE trnW(CCA) trnP(UGG) rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnH(CAU) trnL(CAA) ndhB rps7 rps12 trnN(GUU) ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR(ACG) rrn5 rrn4.5 rrn23 trnA(UGC) trnI(GAU) rrn16 trnV(GAC) trnL(CAA) ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH(GUG) gene − 2 76 75 Locate
psbA gene − 360 1418 1059 Locate
trnK(UUU) gene − 1634 4216 2583 Locate
matK gene − 1939 3474 1536 Locate
rps16 gene − 4789 5943 1155 Locate
trnQ(UUG) gene − 7210 7281 72 Locate
psbK gene + 7645 7830 186 Locate
psbI gene + 8233 8343 111 Locate
trnS(GCU) gene − 8460 8547 88 Locate
trnG(UCC) gene + 9188 9952 765 Locate
trnR(UCU) gene + 10134 10208 75 Locate
atpA gene − 10313 11836 1524 Locate
atpF gene − 11938 13165 1228 Locate
atpH gene − 13544 13789 246 Locate
atpI gene − 14541 15284 744 Locate
rps2 gene − 15452 16162 711 Locate
rpoC2 gene − 16372 20550 4179 Locate
rpoC1 gene − 20705 23544 2840 Locate
rpoB gene − 23550 26762 3213 Locate
trnC(GCA) gene + 27958 28028 71 Locate
petN gene + 28564 28653 90 Locate
psbM gene − 29436 29540 105 Locate
trnD(GUC) gene − 30068 30141 74 Locate
trnY(GUA) gene − 30259 30342 84 Locate
trnE(UUC) gene − 30409 30481 73 Locate
trnT(GGU) gene − 31025 31096 72 Locate
psbD gene + 32262 33323 1062 Locate
psbC gene + 33271 34692 1422 Locate
trnS(UGA) gene − 34955 35047 93 Locate
psbZ gene + 35379 35567 189 Locate
trnG(GCC) gene + 35786 35856 71 Locate
trnfM(CAU) gene − 36037 36110 74 Locate
rps14 gene − 36255 36557 303 Locate
psaB gene − 36680 38884 2205 Locate
psaA gene − 38910 41162 2253 Locate
ycf3 gene − 41886 43835 1950 Locate
trnS(GGA) gene + 44507 44593 87 Locate
rps4 gene − 44903 45508 606 Locate
trnT(UGU) gene − 45896 45968 73 Locate
trnL(UAA) gene + 46649 47203 555 Locate
trnF(GAA) gene + 47503 47575 73 Locate
ndhJ gene − 48212 48688 477 Locate
ndhK gene − 48789 49466 678 Locate
ndhC gene − 49521 49883 363 Locate
trnV(UAC) gene − 50750 51412 663 Locate
trnM(CAU) gene + 51598 51670 73 Locate
atpE gene − 51887 52288 402 Locate
atpB gene − 52285 53781 1497 Locate
rbcL gene + 54569 56008 1440 Locate
accD gene + 56723 58204 1482 Locate
psaI gene + 58817 58927 111 Locate
ycf4 gene + 59350 59904 555 Locate
cemA gene + 60560 61249 690 Locate
petA gene + 61449 62411 963 Locate
psbJ gene − 63321 63443 123 Locate
psbL gene − 63577 63693 117 Locate
psbF gene − 63717 63836 120 Locate
psbE gene − 63851 64102 252 Locate
petL gene + 65022 65117 96 Locate
petG gene + 65299 65412 114 Locate
trnW(CCA) gene − 65540 65613 74 Locate
trnP(UGG) gene − 65781 65854 74 Locate
psaJ gene + 66166 66300 135 Locate
rpl33 gene + 66772 66972 201 Locate
rps18 gene + 67139 67444 306 Locate
rpl20 gene − 67680 68066 387 Locate
rps12 gene − 68891 69004 114 Locate
clpP gene − 69138 71096 1959 Locate
psbB gene + 71518 73044 1527 Locate
psbT gene + 73223 73330 108 Locate
psbN gene − 73391 73522 132 Locate
psbH gene + 73610 73849 240 Locate
petB gene + 73971 75344 1374 Locate
petD gene + 75559 76776 1218 Locate
rpoA gene − 76966 77985 1020 Locate
rps11 gene − 78064 78480 417 Locate
rpl36 gene − 78582 78695 114 Locate
infA gene − 78791 79024 234 Locate
rps8 gene − 79149 79553 405 Locate
rpl14 gene − 79714 80082 369 Locate
rpl16 gene − 80199 81483 1285 Locate
rps3 gene − 81643 82299 657 Locate
rpl22 gene − 82284 82751 468 Locate
rps19 gene − 82807 83085 279 Locate
rpl2 gene − 83139 84648 1510 Locate
rpl23 gene − 84649 84930 282 Locate
trnH(CAU) gene − 85090 85163 74 Locate
ycf2 gene + 85252 92103 6852 Locate
ycf15 gene + 92194 92448 255 Locate
trnL(CAA) gene − 92709 92789 81 Locate
ndhB gene − 93339 95550 2212 Locate
rps7 gene − 95825 96292 468 Locate
rps12 gene − 96346 97142 797 Locate
trnV(GAC) gene + 98724 98795 72 Locate
rrn16 gene + 99023 100513 1491 Locate
trnI(GAU) gene + 100811 101830 1020 Locate
trnA(UGC) gene + 101895 102775 881 Locate
rrn23 gene + 102937 105746 2810 Locate
rrn4.5 gene + 105845 105947 103 Locate
rrn5 gene + 106208 106328 121 Locate
trnR(ACG) gene + 106570 106643 74 Locate
trnN(GUU) gene − 107207 107278 72 Locate
ycf1 gene + 107620 108711 1092 Locate
ndhF gene − 108708 110933 2226 Locate
rpl32 gene + 111467 111643 177 Locate
trnL(UAG) gene + 112112 112191 80 Locate
ccsA gene + 112285 113238 954 Locate
ndhD gene − 113496 115025 1530 Locate
psaC gene − 115126 115371 246 Locate
ndhE gene − 115622 115927 306 Locate
ndhG gene − 116158 116688 531 Locate
ndhI gene − 117053 117559 507 Locate
ndhA gene − 117640 119647 2008 Locate
ndhH gene − 119649 120830 1182 Locate
rps15 gene − 120927 121199 273 Locate
ycf1 gene − 121565 127102 5538 Locate
trnN(GUU) gene + 127444 127515 72 Locate
trnR(ACG) gene − 128080 128152 73 Locate
rrn5 gene − 128394 128514 121 Locate
rrn4.5 gene − 128775 128877 103 Locate
rrn23 gene − 128976 131785 2810 Locate
trnA(UGC) gene − 131947 132827 881 Locate
trnI(GAU) gene − 132892 133911 1020 Locate
rrn16 gene − 134209 135699 1491 Locate
trnV(GAC) gene − 135927 135998 72 Locate
rps12 gene + 137580 138376 797 Locate
rps7 gene + 138430 138897 468 Locate
ndhB gene + 139172 141383 2212 Locate
trnL(CAA) gene − 141933 142013 81 Locate
ycf15 gene − 142274 142528 255 Locate
ycf2 gene − 142619 149470 6852 Locate
trnH(CAU) gene + 149559 149632 74 Locate
rpl23 gene + 149792 150073 282 Locate
rpl2 gene + 150092 151583 1492 Locate
Status Available
Accession NC_056199.1
Length 151,678 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources