Clerodendrum mandarinorum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnR-UCU · MN814861.1 · 1,629–1,700 bp · −
trnG-UCC · MN814861.1 · 1,887–2,651 bp · −
psbI · MN814861.1 · 3,467–3,577 bp · −
psbK · MN814861.1 · 3,986–4,171 bp · −
rpl2 · MN814861.1 · 11,654–13,145 bp · −
rpl23 · MN814861.1 · 13,164–13,445 bp · −
trnI-CAU · MN814861.1 · 13,605–13,678 bp · −
trnL-CAA · MN814861.1 · 21,206–21,286 bp · −
ndhB · MN814861.1 · 21,836–24,047 bp · −
rps7 · MN814861.1 · 24,322–24,789 bp · −
rps12 · MN814861.1 · 24,843–25,639 bp · −
trnN-GUU · MN814861.1 · 35,704–35,775 bp · −
ndhF · MN814861.1 · 37,208–39,433 bp · −
ndhD · MN814861.1 · 42,007–43,509 bp · −
psaC · MN814861.1 · 43,637–43,882 bp · −
ndhE · MN814861.1 · 44,133–44,438 bp · −
ndhG · MN814861.1 · 44,669–45,199 bp · −
ndhI · MN814861.1 · 45,563–46,069 bp · −
ndhH · MN814861.1 · 48,154–49,335 bp · −
rps15 · MN814861.1 · 49,432–49,704 bp · −
ycf1 · MN814861.1 · 50,054–55,585 bp · −
trnR-ACG · MN814861.1 · 56,562–56,635 bp · −
rrn5 · MN814861.1 · 56,877–56,997 bp · −
rrn4.5 · MN814861.1 · 57,258–57,360 bp · −
rrn23 · MN814861.1 · 57,462–60,268 bp · −
trnA-UGC · MN814861.1 · 60,430–61,310 bp · −
trnI-GAU · MN814861.1 · 61,375–62,394 bp · −
rrn16 · MN814861.1 · 62,693–64,182 bp · −
trnV-GAC · MN814861.1 · 64,410–64,481 bp · −
ycf2 · MN814861.1 · 71,102–77,935 bp · −
petD · MN814861.1 · 86,424–87,641 bp · −
petB · MN814861.1 · 87,831–89,203 bp · −
psbH · MN814861.1 · 89,325–89,546 bp · −
psbT · MN814861.1 · 89,844–89,951 bp · −
psbB · MN814861.1 · 90,130–91,656 bp · −
rps18 · MN814861.1 · 95,657–95,962 bp · −
rpl33 · MN814861.1 · 96,129–96,329 bp · −
psaJ · MN814861.1 · 96,801–96,935 bp · −
petG · MN814861.1 · 97,710–97,823 bp · −
petL · MN814861.1 · 98,006–98,101 bp · −
petA · MN814861.1 · 100,708–101,670 bp · −
cemA · MN814861.1 · 101,871–102,560 bp · −
ycf4 · MN814861.1 · 103,216–103,770 bp · −
psaI · MN814861.1 · 104,194–104,304 bp · −
accD · MN814861.1 · 104,926–106,458 bp · −
rbcL · MN814861.1 · 107,110–108,549 bp · −
trnM-CAU · MN814861.1 · 111,449–111,521 bp · −
trnP-GAA · MN814861.1 · 115,560–115,632 bp · −
trnL-UAA · MN814861.1 · 115,931–116,497 bp · −
trnS-GGA · MN814861.1 · 118,539–118,625 bp · −
trnG-GCC · MN814861.1 · 127,266–127,336 bp · −
psbZ · MN814861.1 · 127,554–127,742 bp · −
psbC · MN814861.1 · 128,435–129,856 bp · −
psbD · MN814861.1 · 129,804–130,865 bp · −
trnT-GGU · MN814861.1 · 132,024–132,095 bp · −
petN · MN814861.1 · 134,469–134,558 bp · −
trnC-GCA · MN814861.1 · 135,094–135,164 bp · −
atpA · MN814861.1 · 1–1,524 bp · +
trnS-GCU · MN814861.1 · 3,262–3,349 bp · +
trnQ-UUG · MN814861.1 · 4,535–4,606 bp · +
rps16 · MN814861.1 · 5,585–6,748 bp · +
trnK-UUU · MN814861.1 · 7,315–9,899 bp · +
matK · MN814861.1 · 8,056–9,591 bp · +
psbA · MN814861.1 · 10,115–11,173 bp · +
trnH-GUG · MN814861.1 · 11,484–11,557 bp · +
ycf2 · MN814861.1 · 13,767–20,600 bp · +
rps12 · MN814861.1 · 94,192–94,305 bp · +
trnV-GAC · MN814861.1 · 27,221–27,292 bp · +
rrn16 · MN814861.1 · 27,520–29,009 bp · +
trnI-GAU · MN814861.1 · 29,308–30,327 bp · +
trnA-UGC · MN814861.1 · 30,392–31,272 bp · +
rrn23 · MN814861.1 · 31,434–34,240 bp · +
rrn4.5 · MN814861.1 · 34,342–34,444 bp · +
rrn5 · MN814861.1 · 34,705–34,825 bp · +
trnR-ACG · MN814861.1 · 35,067–35,140 bp · +
ycf1 · MN814861.1 · 36,117–37,211 bp · +
rpl32 · MN814861.1 · 39,986–40,162 bp · +
trnL-UAG · MN814861.1 · 40,622–40,701 bp · +
ccsA · MN814861.1 · 40,796–41,749 bp · +
trnN-GUU · MN814861.1 · 55,927–55,998 bp · +
rps12 · MN814861.1 · 66,063–66,859 bp · +
rps7 · MN814861.1 · 66,913–67,380 bp · +
ndhB · MN814861.1 · 67,655–69,866 bp · +
trnL-CAA · MN814861.1 · 70,416–70,496 bp · +
trnI-CAU · MN814861.1 · 78,024–78,097 bp · +
rpl23 · MN814861.1 · 78,257–78,538 bp · +
rpl2 · MN814861.1 · 78,557–80,048 bp · +
rps19 · MN814861.1 · 80,102–80,380 bp · +
rpl22 · MN814861.1 · 80,436–80,903 bp · +
rps3 · MN814861.1 · 80,888–81,544 bp · +
rpl16 · MN814861.1 · 81,704–83,006 bp · +
rpl14 · MN814861.1 · 83,123–83,491 bp · +
rps8 · MN814861.1 · 83,652–84,056 bp · +
infA · MN814861.1 · 84,182–84,415 bp · +
rpl36 · MN814861.1 · 84,511–84,624 bp · +
rps11 · MN814861.1 · 84,726–85,142 bp · +
rpoA · MN814861.1 · 85,221–86,234 bp · +
psbN · MN814861.1 · 89,652–89,783 bp · +
clpP · MN814861.1 · 92,084–94,058 bp · +
rpl20 · MN814861.1 · 95,035–95,421 bp · +
trnP-UGG · MN814861.1 · 97,273–97,346 bp · +
trnW-CCA · MN814861.1 · 97,514–97,587 bp · +
psbE · MN814861.1 · 99,020–99,271 bp · +
psbF · MN814861.1 · 99,286–99,405 bp · +
psbL · MN814861.1 · 99,429–99,545 bp · +
psbJ · MN814861.1 · 99,679–99,801 bp · +
atpB · MN814861.1 · 109,338–110,834 bp · +
atpE · MN814861.1 · 110,831–111,232 bp · +
trnV-UAC · MN814861.1 · 111,707–112,370 bp · +
ndhC · MN814861.1 · 113,252–113,614 bp · +
ndhK · MN814861.1 · 113,669–114,346 bp · +
ndhJ · MN814861.1 · 114,447–114,923 bp · +
trnT-UGU · MN814861.1 · 117,177–117,249 bp · +
rps4 · MN814861.1 · 117,624–118,229 bp · +
ycf3 · MN814861.1 · 119,305–121,254 bp · +
psaA · MN814861.1 · 121,960–124,212 bp · +
psaB · MN814861.1 · 124,238–126,442 bp · +
rps14 · MN814861.1 · 126,565–126,867 bp · +
trnM-CAU · MN814861.1 · 127,012–127,085 bp · +
trnS-UGA · MN814861.1 · 128,075–128,167 bp · +
trnE-UUC · MN814861.1 · 132,639–132,711 bp · +
trnY-GUA · MN814861.1 · 132,778–132,861 bp · +
trnD-GUC · MN814861.1 · 132,987–133,060 bp · +
psbM · MN814861.1 · 133,582–133,686 bp · +
rpoB · MN814861.1 · 136,368–139,580 bp · +
rpoC2 · MN814861.1 · 142,589–146,755 bp · +
rps2 · MN814861.1 · 146,965–147,675 bp · +
atpI · MN814861.1 · 147,841–148,584 bp · +
atpH · MN814861.1 · 149,336–149,581 bp · +
atpF · MN814861.1 · 149,959–151,186 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clerodendrum mandarinorum
ANNOTATED PLASTOME
MN814861.1
151,288 bp · 129 genes
Gene function
ATP synthase
Transfer RNA
Photosystem II
Ribosomal protein
Other
NADH dehydrogenase
Ribosomal RNA
Photosystem I
RNA polymerase
Cytochrome
0 37822 75644 113466 151288 bp
Forward strand 5′ → 3′
atpA trnS-GCU trnQ-UUG rps16 trnK-UUU matK psbA trnH-GUG ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19 rpl22 rps3 rpl16 rpl14 rps8 infA rpl36 rps11 rpoA psbN clpP rps12 rpl20 trnP-UGG trnW-CCA psbE psbF psbL psbJ atpB atpE trnV-UAC ndhC ndhK ndhJ trnT-UGU rps4 ycf3 psaA psaB rps14 trnM-CAU trnS-UGA trnE-UUC trnY-GUA trnD-GUC psbM rpoB rpoC2 rps2 atpI atpH atpF
trnR-UCU trnG-UCC psbI psbK rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2 petD petB psbH psbT psbB rps18 rpl33 psaJ petG petL petA cemA ycf4 psaI accD rbcL trnM-CAU trnP-GAA trnL-UAA trnS-GGA trnG-GCC psbZ psbC psbD trnT-GGU petN trnC-GCA
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
130 local segments
Gene Type Group Strand Start End Length
atpA gene + 1 1524 1524 Locate
trnR-UCU gene − 1629 1700 72 Locate
trnG-UCC gene − 1887 2651 765 Locate
trnS-GCU gene + 3262 3349 88 Locate
psbI gene − 3467 3577 111 Locate
psbK gene − 3986 4171 186 Locate
trnQ-UUG gene + 4535 4606 72 Locate
rps16 gene + 5585 6748 1164 Locate
trnK-UUU gene + 7315 9899 2585 Locate
matK gene + 8056 9591 1536 Locate
psbA gene + 10115 11173 1059 Locate
trnH-GUG gene + 11484 11557 74 Locate
rpl2 gene − 11654 13145 1492 Locate
rpl23 gene − 13164 13445 282 Locate
trnI-CAU gene − 13605 13678 74 Locate
ycf2 gene + 13767 20600 6834 Locate
trnL-CAA gene − 21206 21286 81 Locate
ndhB gene − 21836 24047 2212 Locate
rps7 gene − 24322 24789 468 Locate
rps12 gene − 24843 25639 797 Locate
trnV-GAC gene + 27221 27292 72 Locate
rrn16 gene + 27520 29009 1490 Locate
trnI-GAU gene + 29308 30327 1020 Locate
trnA-UGC gene + 30392 31272 881 Locate
rrn23 gene + 31434 34240 2807 Locate
rrn4.5 gene + 34342 34444 103 Locate
rrn5 gene + 34705 34825 121 Locate
trnR-ACG gene + 35067 35140 74 Locate
trnN-GUU gene − 35704 35775 72 Locate
ycf1 gene + 36117 37211 1095 Locate
ndhF gene − 37208 39433 2226 Locate
rpl32 gene + 39986 40162 177 Locate
trnL-UAG gene + 40622 40701 80 Locate
ccsA gene + 40796 41749 954 Locate
ndhD gene − 42007 43509 1503 Locate
psaC gene − 43637 43882 246 Locate
ndhE gene − 44133 44438 306 Locate
ndhG gene − 44669 45199 531 Locate
ndhI gene − 45563 46069 507 Locate
ndhH gene − 48154 49335 1182 Locate
rps15 gene − 49432 49704 273 Locate
ycf1 gene − 50054 55585 5532 Locate
trnN-GUU gene + 55927 55998 72 Locate
trnR-ACG gene − 56562 56635 74 Locate
rrn5 gene − 56877 56997 121 Locate
rrn4.5 gene − 57258 57360 103 Locate
rrn23 gene − 57462 60268 2807 Locate
trnA-UGC gene − 60430 61310 881 Locate
trnI-GAU gene − 61375 62394 1020 Locate
rrn16 gene − 62693 64182 1490 Locate
trnV-GAC gene − 64410 64481 72 Locate
rps12 gene + 66063 66859 797 Locate
rps7 gene + 66913 67380 468 Locate
ndhB gene + 67655 69866 2212 Locate
trnL-CAA gene + 70416 70496 81 Locate
ycf2 gene − 71102 77935 6834 Locate
trnI-CAU gene + 78024 78097 74 Locate
rpl23 gene + 78257 78538 282 Locate
rpl2 gene + 78557 80048 1492 Locate
rps19 gene + 80102 80380 279 Locate
rpl22 gene + 80436 80903 468 Locate
rps3 gene + 80888 81544 657 Locate
rpl16 gene + 81704 83006 1303 Locate
rpl14 gene + 83123 83491 369 Locate
rps8 gene + 83652 84056 405 Locate
infA gene + 84182 84415 234 Locate
rpl36 gene + 84511 84624 114 Locate
rps11 gene + 84726 85142 417 Locate
rpoA gene + 85221 86234 1014 Locate
petD gene − 86424 87641 1218 Locate
petB gene − 87831 89203 1373 Locate
psbH gene − 89325 89546 222 Locate
psbN gene + 89652 89783 132 Locate
psbT gene − 89844 89951 108 Locate
psbB gene − 90130 91656 1527 Locate
clpP gene + 92084 94058 1975 Locate
rps12 gene + 94192 94305 114 Locate
rpl20 gene + 95035 95421 387 Locate
rps18 gene − 95657 95962 306 Locate
rpl33 gene − 96129 96329 201 Locate
psaJ gene − 96801 96935 135 Locate
trnP-UGG gene + 97273 97346 74 Locate
trnW-CCA gene + 97514 97587 74 Locate
petG gene − 97710 97823 114 Locate
petL gene − 98006 98101 96 Locate
psbE gene + 99020 99271 252 Locate
psbF gene + 99286 99405 120 Locate
psbL gene + 99429 99545 117 Locate
psbJ gene + 99679 99801 123 Locate
petA gene − 100708 101670 963 Locate
cemA gene − 101871 102560 690 Locate
ycf4 gene − 103216 103770 555 Locate
psaI gene − 104194 104304 111 Locate
accD gene − 104926 106458 1533 Locate
rbcL gene − 107110 108549 1440 Locate
atpB gene + 109338 110834 1497 Locate
atpE gene + 110831 111232 402 Locate
trnM-CAU gene − 111449 111521 73 Locate
trnV-UAC gene + 111707 112370 664 Locate
ndhC gene + 113252 113614 363 Locate
ndhK gene + 113669 114346 678 Locate
ndhJ gene + 114447 114923 477 Locate
trnP-GAA gene − 115560 115632 73 Locate
trnL-UAA gene − 115931 116497 567 Locate
trnT-UGU gene + 117177 117249 73 Locate
rps4 gene + 117624 118229 606 Locate
trnS-GGA gene − 118539 118625 87 Locate
ycf3 gene + 119305 121254 1950 Locate
psaA gene + 121960 124212 2253 Locate
psaB gene + 124238 126442 2205 Locate
rps14 gene + 126565 126867 303 Locate
trnM-CAU gene + 127012 127085 74 Locate
trnG-GCC gene − 127266 127336 71 Locate
psbZ gene − 127554 127742 189 Locate
trnS-UGA gene + 128075 128167 93 Locate
psbC gene − 128435 129856 1422 Locate
psbD gene − 129804 130865 1062 Locate
trnT-GGU gene − 132024 132095 72 Locate
trnE-UUC gene + 132639 132711 73 Locate
trnY-GUA gene + 132778 132861 84 Locate
trnD-GUC gene + 132987 133060 74 Locate
psbM gene + 133582 133686 105 Locate
petN gene − 134469 134558 90 Locate
trnC-GCA gene − 135094 135164 71 Locate
rpoB gene + 136368 139580 3213 Locate
rpoC2 gene + 142589 146755 4167 Locate
rps2 gene + 146965 147675 711 Locate
atpI gene + 147841 148584 744 Locate
atpH gene + 149336 149581 246 Locate
atpF gene + 149959 151186 1228 Locate
Status Available
Accession MN814861.1
Length 151,288 bp
GC content 38.2%
Annotated genes 129
Gene sequence records 8
Atp Synthase 6 Translation Rna 37 Photosystem Ii 15 Ribosomal Protein 26 Other 13 Nad Dehydrogenase 11 Ribosomal Rna 8 Photosystem I 5 Rna Polymerase 3 Cytochrome 6
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources