Clerodendrum paniculatum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_073114.1 · 3–77 bp · −
psbA · NC_073114.1 · 404–1,462 bp · −
trnK-UUU · NC_073114.1 · 1,678–4,249 bp · −
matK · NC_073114.1 · 1,970–3,487 bp · −
rps16 · NC_073114.1 · 4,895–6,037 bp · −
trnQ-UUG · NC_073114.1 · 7,287–7,358 bp · −
trnS-GCU · NC_073114.1 · 8,541–8,628 bp · −
atpA · NC_073114.1 · 10,402–11,925 bp · −
atpF · NC_073114.1 · 12,020–13,247 bp · −
atpH · NC_073114.1 · 13,632–13,877 bp · −
atpI · NC_073114.1 · 14,895–15,638 bp · −
rps2 · NC_073114.1 · 15,845–16,555 bp · −
rpoC2 · NC_073114.1 · 16,769–20,947 bp · −
rpoC1 · NC_073114.1 · 21,049–23,912 bp · −
rpoB · NC_073114.1 · 23,939–27,151 bp · −
psbM · NC_073114.1 · 29,941–30,045 bp · −
trnD-GUC · NC_073114.1 · 30,568–30,641 bp · −
trnY-GUA · NC_073114.1 · 30,759–30,842 bp · −
trnE-UUC · NC_073114.1 · 30,902–30,974 bp · −
trnS-UGA · NC_073114.1 · 35,457–35,549 bp · −
trnfM-CAU · NC_073114.1 · 36,518–36,591 bp · −
rps14 · NC_073114.1 · 36,736–37,038 bp · −
psaB · NC_073114.1 · 37,164–39,368 bp · −
psaA · NC_073114.1 · 39,394–41,646 bp · −
ycf3 · NC_073114.1 · 42,374–44,312 bp · −
rps4 · NC_073114.1 · 45,393–45,998 bp · −
trnT-UGU · NC_073114.1 · 46,374–46,446 bp · −
ndhJ · NC_073114.1 · 48,723–49,199 bp · −
ndhK · NC_073114.1 · 49,300–50,040 bp · −
ndhC · NC_073114.1 · 50,031–50,393 bp · −
trnV-UAC · NC_073114.1 · 51,231–51,894 bp · −
atpE · NC_073114.1 · 52,379–52,780 bp · −
atpB · NC_073114.1 · 52,777–54,273 bp · −
psbJ · NC_073114.1 · 63,825–63,947 bp · −
psbL · NC_073114.1 · 64,081–64,197 bp · −
psbF · NC_073114.1 · 64,221–64,340 bp · −
psbE · NC_073114.1 · 64,355–64,606 bp · −
trnW-CCA · NC_073114.1 · 66,014–66,087 bp · −
trnP-UGG · NC_073114.1 · 66,250–66,323 bp · −
rpl20 · NC_073114.1 · 68,129–68,527 bp · −
rps12 · NC_073114.1 · 69,358–69,471 bp · −
rps12 · NC_073114.1 · 96,773–97,569 bp · −
clpP1 · NC_073114.1 · 69,603–71,560 bp · −
psbN · NC_073114.1 · 73,877–74,008 bp · −
rpoA · NC_073114.1 · 77,417–78,430 bp · −
rps11 · NC_073114.1 · 78,508–78,924 bp · −
rpl36 · NC_073114.1 · 79,026–79,139 bp · −
infA · NC_073114.1 · 79,236–79,469 bp · −
rps8 · NC_073114.1 · 79,592–79,996 bp · −
rpl14 · NC_073114.1 · 80,157–80,525 bp · −
rpl16 · NC_073114.1 · 80,642–81,917 bp · −
rps3 · NC_073114.1 · 82,076–82,732 bp · −
rpl22 · NC_073114.1 · 82,717–83,184 bp · −
rps19 · NC_073114.1 · 83,240–83,518 bp · −
rpl2 · NC_073114.1 · 83,572–85,063 bp · −
rpl23 · NC_073114.1 · 85,082–85,363 bp · −
trnM-CAU · NC_073114.1 · 85,529–85,602 bp · −
ndhB · NC_073114.1 · 93,766–95,977 bp · −
rps7 · NC_073114.1 · 96,252–96,719 bp · −
trnN-GUU · NC_073114.1 · 107,658–107,729 bp · −
ndhF · NC_073114.1 · 109,179–111,413 bp · −
ndhD · NC_073114.1 · 114,007–115,542 bp · −
psaC · NC_073114.1 · 115,636–115,881 bp · −
ndhE · NC_073114.1 · 116,133–116,438 bp · −
ndhG · NC_073114.1 · 116,649–117,179 bp · −
ndhI · NC_073114.1 · 117,533–118,039 bp · −
ndhA · NC_073114.1 · 118,120–120,141 bp · −
ndhH · NC_073114.1 · 120,143–121,324 bp · −
rps15 · NC_073114.1 · 121,421–121,693 bp · −
ycf1 · NC_073114.1 · 122,065–127,632 bp · −
trnR-ACG · NC_073114.1 · 128,610–128,682 bp · −
rrn5 · NC_073114.1 · 128,924–129,044 bp · −
rrn4.5 · NC_073114.1 · 129,305–129,407 bp · −
rrn23 · NC_073114.1 · 129,506–132,315 bp · −
trnA-UGC · NC_073114.1 · 132,477–133,356 bp · −
trnI-GAU · NC_073114.1 · 133,421–134,442 bp · −
rrn16 · NC_073114.1 · 134,740–136,230 bp · −
trnV-GAC · NC_073114.1 · 136,458–136,529 bp · −
ycf15 · NC_073114.1 · 142,840–143,088 bp · −
ycf2 · NC_073114.1 · 143,179–150,012 bp · −
psbK · NC_073114.1 · 7,707–7,892 bp · +
psbI · NC_073114.1 · 8,307–8,417 bp · +
trnG-UCC · NC_073114.1 · 9,271–10,039 bp · +
trnR-UCU · NC_073114.1 · 10,225–10,296 bp · +
trnC-GCA · NC_073114.1 · 28,370–28,440 bp · +
petN · NC_073114.1 · 29,002–29,091 bp · +
trnT-GGU · NC_073114.1 · 31,533–31,604 bp · +
psbD · NC_073114.1 · 32,766–33,827 bp · +
psbC · NC_073114.1 · 33,811–35,196 bp · +
psbZ · NC_073114.1 · 35,875–36,063 bp · +
trnG-GCC · NC_073114.1 · 36,279–36,349 bp · +
trnS-GGA · NC_073114.1 · 45,000–45,086 bp · +
trnL-UAA · NC_073114.1 · 47,158–47,722 bp · +
trnF-GAA · NC_073114.1 · 48,013–48,085 bp · +
trnM-CAU · NC_073114.1 · 52,075–52,147 bp · +
rbcL · NC_073114.1 · 55,069–56,508 bp · +
accD · NC_073114.1 · 57,168–58,700 bp · +
psaI · NC_073114.1 · 59,328–59,438 bp · +
ycf4 · NC_073114.1 · 59,860–60,414 bp · +
cemA · NC_073114.1 · 61,075–61,764 bp · +
petA · NC_073114.1 · 61,973–62,935 bp · +
petL · NC_073114.1 · 65,509–65,604 bp · +
petG · NC_073114.1 · 65,779–65,892 bp · +
psaJ · NC_073114.1 · 66,626–66,760 bp · +
rpl33 · NC_073114.1 · 67,242–67,442 bp · +
rps18 · NC_073114.1 · 67,609–67,914 bp · +
rps12 · NC_073114.1 · 138,134–138,930 bp · +
psbB · NC_073114.1 · 72,005–73,531 bp · +
psbT · NC_073114.1 · 73,709–73,816 bp · +
psbH · NC_073114.1 · 74,114–74,335 bp · +
petB · NC_073114.1 · 74,458–75,828 bp · +
petD · NC_073114.1 · 76,017–77,227 bp · +
ycf2 · NC_073114.1 · 85,691–92,524 bp · +
ycf15 · NC_073114.1 · 92,615–92,863 bp · +
trnL-CAA · NC_073114.1 · 93,136–93,216 bp · +
trnV-GAC · NC_073114.1 · 99,174–99,245 bp · +
rrn16 · NC_073114.1 · 99,473–100,962 bp · +
trnI-GAU · NC_073114.1 · 101,261–102,282 bp · +
trnA-UGC · NC_073114.1 · 102,347–103,226 bp · +
rrn23 · NC_073114.1 · 103,388–106,197 bp · +
rrn4.5 · NC_073114.1 · 106,296–106,398 bp · +
rrn5 · NC_073114.1 · 106,659–106,779 bp · +
trnR-ACG · NC_073114.1 · 107,021–107,094 bp · +
ycf1 · NC_073114.1 · 108,071–109,189 bp · +
rpl32 · NC_073114.1 · 111,974–112,150 bp · +
trnL-UAG · NC_073114.1 · 112,618–112,697 bp · +
ccsA · NC_073114.1 · 112,797–113,762 bp · +
trnN-GUU · NC_073114.1 · 127,974–128,045 bp · +
rps7 · NC_073114.1 · 138,984–139,451 bp · +
ndhB · NC_073114.1 · 139,726–141,937 bp · +
trnL-CAA · NC_073114.1 · 142,487–142,567 bp · +
trnM-CAU · NC_073114.1 · 150,101–150,174 bp · +
rpl23 · NC_073114.1 · 150,340–150,621 bp · +
rpl2 · NC_073114.1 · 150,640–152,131 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clerodendrum paniculatum
ANNOTATED PLASTOME
NC_073114.1
152,225 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38056 76112 114169 152225 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnL-CAA trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 77 75 Locate
psbA gene − 404 1462 1059 Locate
trnK-UUU gene − 1678 4249 2572 Locate
matK gene − 1970 3487 1518 Locate
rps16 gene − 4895 6037 1143 Locate
trnQ-UUG gene − 7287 7358 72 Locate
psbK gene + 7707 7892 186 Locate
psbI gene + 8307 8417 111 Locate
trnS-GCU gene − 8541 8628 88 Locate
trnG-UCC gene + 9271 10039 769 Locate
trnR-UCU gene + 10225 10296 72 Locate
atpA gene − 10402 11925 1524 Locate
atpF gene − 12020 13247 1228 Locate
atpH gene − 13632 13877 246 Locate
atpI gene − 14895 15638 744 Locate
rps2 gene − 15845 16555 711 Locate
rpoC2 gene − 16769 20947 4179 Locate
rpoC1 gene − 21049 23912 2864 Locate
rpoB gene − 23939 27151 3213 Locate
trnC-GCA gene + 28370 28440 71 Locate
petN gene + 29002 29091 90 Locate
psbM gene − 29941 30045 105 Locate
trnD-GUC gene − 30568 30641 74 Locate
trnY-GUA gene − 30759 30842 84 Locate
trnE-UUC gene − 30902 30974 73 Locate
trnT-GGU gene + 31533 31604 72 Locate
psbD gene + 32766 33827 1062 Locate
psbC gene + 33811 35196 1386 Locate
trnS-UGA gene − 35457 35549 93 Locate
psbZ gene + 35875 36063 189 Locate
trnG-GCC gene + 36279 36349 71 Locate
trnfM-CAU gene − 36518 36591 74 Locate
rps14 gene − 36736 37038 303 Locate
psaB gene − 37164 39368 2205 Locate
psaA gene − 39394 41646 2253 Locate
ycf3 gene − 42374 44312 1939 Locate
trnS-GGA gene + 45000 45086 87 Locate
rps4 gene − 45393 45998 606 Locate
trnT-UGU gene − 46374 46446 73 Locate
trnL-UAA gene + 47158 47722 565 Locate
trnF-GAA gene + 48013 48085 73 Locate
ndhJ gene − 48723 49199 477 Locate
ndhK gene − 49300 50040 741 Locate
ndhC gene − 50031 50393 363 Locate
trnV-UAC gene − 51231 51894 664 Locate
trnM-CAU gene + 52075 52147 73 Locate
atpE gene − 52379 52780 402 Locate
atpB gene − 52777 54273 1497 Locate
rbcL gene + 55069 56508 1440 Locate
accD gene + 57168 58700 1533 Locate
psaI gene + 59328 59438 111 Locate
ycf4 gene + 59860 60414 555 Locate
cemA gene + 61075 61764 690 Locate
petA gene + 61973 62935 963 Locate
psbJ gene − 63825 63947 123 Locate
psbL gene − 64081 64197 117 Locate
psbF gene − 64221 64340 120 Locate
psbE gene − 64355 64606 252 Locate
petL gene + 65509 65604 96 Locate
petG gene + 65779 65892 114 Locate
trnW-CCA gene − 66014 66087 74 Locate
trnP-UGG gene − 66250 66323 74 Locate
psaJ gene + 66626 66760 135 Locate
rpl33 gene + 67242 67442 201 Locate
rps18 gene + 67609 67914 306 Locate
rpl20 gene − 68129 68527 399 Locate
rps12 gene − 69358 69471 114 Locate
clpP1 gene − 69603 71560 1958 Locate
psbB gene + 72005 73531 1527 Locate
psbT gene + 73709 73816 108 Locate
psbN gene − 73877 74008 132 Locate
psbH gene + 74114 74335 222 Locate
petB gene + 74458 75828 1371 Locate
petD gene + 76017 77227 1211 Locate
rpoA gene − 77417 78430 1014 Locate
rps11 gene − 78508 78924 417 Locate
rpl36 gene − 79026 79139 114 Locate
infA gene − 79236 79469 234 Locate
rps8 gene − 79592 79996 405 Locate
rpl14 gene − 80157 80525 369 Locate
rpl16 gene − 80642 81917 1276 Locate
rps3 gene − 82076 82732 657 Locate
rpl22 gene − 82717 83184 468 Locate
rps19 gene − 83240 83518 279 Locate
rpl2 gene − 83572 85063 1492 Locate
rpl23 gene − 85082 85363 282 Locate
trnM-CAU gene − 85529 85602 74 Locate
ycf2 gene + 85691 92524 6834 Locate
ycf15 gene + 92615 92863 249 Locate
trnL-CAA gene + 93136 93216 81 Locate
ndhB gene − 93766 95977 2212 Locate
rps7 gene − 96252 96719 468 Locate
rps12 gene − 96773 97569 797 Locate
trnV-GAC gene + 99174 99245 72 Locate
rrn16 gene + 99473 100962 1490 Locate
trnI-GAU gene + 101261 102282 1022 Locate
trnA-UGC gene + 102347 103226 880 Locate
rrn23 gene + 103388 106197 2810 Locate
rrn4.5 gene + 106296 106398 103 Locate
rrn5 gene + 106659 106779 121 Locate
trnR-ACG gene + 107021 107094 74 Locate
trnN-GUU gene − 107658 107729 72 Locate
ycf1 gene + 108071 109189 1119 Locate
ndhF gene − 109179 111413 2235 Locate
rpl32 gene + 111974 112150 177 Locate
trnL-UAG gene + 112618 112697 80 Locate
ccsA gene + 112797 113762 966 Locate
ndhD gene − 114007 115542 1536 Locate
psaC gene − 115636 115881 246 Locate
ndhE gene − 116133 116438 306 Locate
ndhG gene − 116649 117179 531 Locate
ndhI gene − 117533 118039 507 Locate
ndhA gene − 118120 120141 2022 Locate
ndhH gene − 120143 121324 1182 Locate
rps15 gene − 121421 121693 273 Locate
ycf1 gene − 122065 127632 5568 Locate
trnN-GUU gene + 127974 128045 72 Locate
trnR-ACG gene − 128610 128682 73 Locate
rrn5 gene − 128924 129044 121 Locate
rrn4.5 gene − 129305 129407 103 Locate
rrn23 gene − 129506 132315 2810 Locate
trnA-UGC gene − 132477 133356 880 Locate
trnI-GAU gene − 133421 134442 1022 Locate
rrn16 gene − 134740 136230 1491 Locate
trnV-GAC gene − 136458 136529 72 Locate
rps12 gene + 138134 138930 797 Locate
rps7 gene + 138984 139451 468 Locate
ndhB gene + 139726 141937 2212 Locate
trnL-CAA gene + 142487 142567 81 Locate
ycf15 gene − 142840 143088 249 Locate
ycf2 gene − 143179 150012 6834 Locate
trnM-CAU gene + 150101 150174 74 Locate
rpl23 gene + 150340 150621 282 Locate
rpl2 gene + 150640 152131 1492 Locate
Status Available
Accession NC_073114.1
Length 152,225 bp
GC content 38.1%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources