Clinopodium alpinum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP024531.1 · 11–85 bp · −
psbA · PP024531.1 · 416–1,474 bp · −
trnK-UUU · PP024531.1 · 1,694–4,290 bp · −
matK · PP024531.1 · 2,019–3,548 bp · −
rps16 · PP024531.1 · 4,849–5,981 bp · −
trnQ-UUG · PP024531.1 · 6,993–7,064 bp · −
trnS-GCU · PP024531.1 · 8,286–8,373 bp · −
atpA · PP024531.1 · 10,171–11,694 bp · −
atpF · PP024531.1 · 11,787–13,041 bp · −
atpH · PP024531.1 · 13,314–13,559 bp · −
atpI · PP024531.1 · 14,591–15,334 bp · −
rps2 · PP024531.1 · 15,559–16,269 bp · −
rpoC2 · PP024531.1 · 16,498–20,697 bp · −
rpoC1 · PP024531.1 · 20,858–23,669 bp · −
rpoB · PP024531.1 · 23,696–26,908 bp · −
psbM · PP024531.1 · 29,310–29,414 bp · −
trnD-GUC · PP024531.1 · 29,929–30,005 bp · −
trnY-GUA · PP024531.1 · 30,121–30,206 bp · −
trnE-UUC · PP024531.1 · 30,285–30,357 bp · −
trnS-UGA · PP024531.1 · 35,031–35,123 bp · −
trnM-CAU · PP024531.1 · 36,165–36,239 bp · −
rps14 · PP024531.1 · 36,389–36,691 bp · −
psaB · PP024531.1 · 36,817–39,021 bp · −
psaA · PP024531.1 · 39,047–41,299 bp · −
ycf3 · PP024531.1 · 42,109–44,051 bp · −
rps4 · PP024531.1 · 45,277–45,882 bp · −
trnT-UGU · PP024531.1 · 46,249–46,323 bp · −
ndhJ · PP024531.1 · 48,583–49,059 bp · −
ndhK · PP024531.1 · 49,170–49,847 bp · −
ndhC · PP024531.1 · 49,899–50,261 bp · −
trnV-UAC · PP024531.1 · 51,230–51,875 bp · −
atpE · PP024531.1 · 52,339–52,740 bp · −
atpB · PP024531.1 · 52,737–54,227 bp · −
psbJ · PP024531.1 · 63,500–63,622 bp · −
psbL · PP024531.1 · 63,757–63,873 bp · −
psbF · PP024531.1 · 63,897–64,016 bp · −
psbE · PP024531.1 · 64,031–64,282 bp · −
trnW-CCA · PP024531.1 · 65,655–65,728 bp · −
trnP-UGG · PP024531.1 · 65,900–65,975 bp · −
rpl20 · PP024531.1 · 67,724–68,110 bp · −
rps12 · PP024531.1 · 68,914–69,027 bp · −
rps12 · PP024531.1 · 96,357–97,150 bp · −
clpP1 · PP024531.1 · 69,150–71,082 bp · −
psbN · PP024531.1 · 73,431–73,562 bp · −
rpoA · PP024531.1 · 76,966–77,973 bp · −
rps11 · PP024531.1 · 78,044–78,460 bp · −
rpl36 · PP024531.1 · 78,570–78,683 bp · −
infA · PP024531.1 · 78,779–79,012 bp · −
rps8 · PP024531.1 · 79,138–79,542 bp · −
rpl14 · PP024531.1 · 79,725–80,093 bp · −
rpl16 · PP024531.1 · 80,225–81,503 bp · −
rps3 · PP024531.1 · 81,654–82,316 bp · −
rpl22 · PP024531.1 · 82,301–82,768 bp · −
rps19 · PP024531.1 · 82,838–83,116 bp · −
rpl2 · PP024531.1 · 83,176–84,667 bp · −
rpl23 · PP024531.1 · 84,686–84,967 bp · −
trnM-CAU · PP024531.1 · 85,132–85,206 bp · −
trnL-CAA · PP024531.1 · 92,721–92,803 bp · −
ndhB · PP024531.1 · 93,363–95,570 bp · −
rps7 · PP024531.1 · 95,836–96,303 bp · −
trnN-GUU · PP024531.1 · 107,235–107,308 bp · −
ndhF · PP024531.1 · 108,661–110,892 bp · −
ndhD · PP024531.1 · 113,672–115,174 bp · −
psaC · PP024531.1 · 115,305–115,550 bp · −
ndhE · PP024531.1 · 115,796–116,101 bp · −
ndhG · PP024531.1 · 116,316–116,846 bp · −
ndhI · PP024531.1 · 117,232–117,738 bp · −
ndhA · PP024531.1 · 117,814–119,905 bp · −
ndhH · PP024531.1 · 119,907–121,142 bp · −
rps15 · PP024531.1 · 121,188–121,460 bp · −
ycf1 · PP024531.1 · 121,910–127,531 bp · −
trnR-ACG · PP024531.1 · 128,345–128,419 bp · −
rrn5 · PP024531.1 · 128,663–128,783 bp · −
rrn4.5 · PP024531.1 · 129,044–129,146 bp · −
rrn23 · PP024531.1 · 129,245–132,055 bp · −
trnA-UGC · PP024531.1 · 132,220–133,097 bp · −
trnE-UUC · PP024531.1 · 133,168–134,188 bp · −
rrn16 · PP024531.1 · 134,487–135,977 bp · −
trnV-GAC · PP024531.1 · 136,204–136,275 bp · −
ycf15 · PP024531.1 · 142,591–142,839 bp · −
ycf2 · PP024531.1 · 142,930–149,742 bp · −
psbK · PP024531.1 · 7,451–7,636 bp · +
psbI · PP024531.1 · 8,030–8,140 bp · +
trnG-UCC · PP024531.1 · 9,065–9,817 bp · +
trnR-UCU · PP024531.1 · 9,991–10,062 bp · +
trnC-GCA · PP024531.1 · 28,035–28,105 bp · +
petN · PP024531.1 · 28,266–28,355 bp · +
trnT-GGU · PP024531.1 · 30,908–30,981 bp · +
psbD · PP024531.1 · 32,356–33,417 bp · +
psbC · PP024531.1 · 33,365–34,786 bp · +
psbZ · PP024531.1 · 35,462–35,650 bp · +
trnG-GCC · PP024531.1 · 35,920–35,991 bp · +
trnS-GGA · PP024531.1 · 44,903–44,990 bp · +
trnL-UAA · PP024531.1 · 47,004–47,579 bp · +
trnF-GAA · PP024531.1 · 47,872–47,945 bp · +
trnM-CAU · PP024531.1 · 52,056–52,128 bp · +
rbcL · PP024531.1 · 54,989–56,443 bp · +
accD · PP024531.1 · 57,199–58,680 bp · +
psaI · PP024531.1 · 59,153–59,263 bp · +
ycf4 · PP024531.1 · 59,681–60,235 bp · +
cemA · PP024531.1 · 60,615–61,304 bp · +
petA · PP024531.1 · 61,523–62,485 bp · +
petL · PP024531.1 · 65,162–65,257 bp · +
petG · PP024531.1 · 65,427–65,540 bp · +
psaJ · PP024531.1 · 66,249–66,383 bp · +
rpl33 · PP024531.1 · 66,832–67,035 bp · +
rps18 · PP024531.1 · 67,186–67,491 bp · +
rps12 · PP024531.1 · 137,907–138,700 bp · +
psbB · PP024531.1 · 71,541–73,067 bp · +
psbT · PP024531.1 · 73,261–73,362 bp · +
psbH · PP024531.1 · 73,668–73,889 bp · +
petB · PP024531.1 · 74,023–75,395 bp · +
petD · PP024531.1 · 75,583–76,772 bp · +
ycf2 · PP024531.1 · 85,315–92,127 bp · +
ycf15 · PP024531.1 · 92,218–92,466 bp · +
trnV-GAC · PP024531.1 · 98,782–98,853 bp · +
rrn16 · PP024531.1 · 99,080–100,570 bp · +
trnE-UUC · PP024531.1 · 100,869–101,889 bp · +
trnA-UGC · PP024531.1 · 101,960–102,837 bp · +
rrn23 · PP024531.1 · 103,002–105,812 bp · +
rrn4.5 · PP024531.1 · 105,911–106,013 bp · +
rrn5 · PP024531.1 · 106,274–106,394 bp · +
trnR-ACG · PP024531.1 · 106,638–106,712 bp · +
ycf1 · PP024531.1 · 107,637–108,767 bp · +
rpl32 · PP024531.1 · 111,334–111,504 bp · +
trnL-UAG · PP024531.1 · 112,257–112,336 bp · +
ccsA · PP024531.1 · 112,438–113,415 bp · +
trnN-GUU · PP024531.1 · 127,749–127,822 bp · +
rps7 · PP024531.1 · 138,754–139,221 bp · +
ndhB · PP024531.1 · 139,487–141,694 bp · +
trnL-CAA · PP024531.1 · 142,254–142,336 bp · +
trnM-CAU · PP024531.1 · 149,851–149,925 bp · +
rpl23 · PP024531.1 · 150,090–150,371 bp · +
rpl2 · PP024531.1 · 150,390–151,881 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clinopodium alpinum
ANNOTATED PLASTOME
PP024531.1
151,983 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37996 75992 113987 151983 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnE-UUC trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnE-UUC rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 416 1474 1059 Locate
trnK-UUU gene − 1694 4290 2597 Locate
matK gene − 2019 3548 1530 Locate
rps16 gene − 4849 5981 1133 Locate
trnQ-UUG gene − 6993 7064 72 Locate
psbK gene + 7451 7636 186 Locate
psbI gene + 8030 8140 111 Locate
trnS-GCU gene − 8286 8373 88 Locate
trnG-UCC gene + 9065 9817 753 Locate
trnR-UCU gene + 9991 10062 72 Locate
atpA gene − 10171 11694 1524 Locate
atpF gene − 11787 13041 1255 Locate
atpH gene − 13314 13559 246 Locate
atpI gene − 14591 15334 744 Locate
rps2 gene − 15559 16269 711 Locate
rpoC2 gene − 16498 20697 4200 Locate
rpoC1 gene − 20858 23669 2812 Locate
rpoB gene − 23696 26908 3213 Locate
trnC-GCA gene + 28035 28105 71 Locate
petN gene + 28266 28355 90 Locate
psbM gene − 29310 29414 105 Locate
trnD-GUC gene − 29929 30005 77 Locate
trnY-GUA gene − 30121 30206 86 Locate
trnE-UUC gene − 30285 30357 73 Locate
trnT-GGU gene + 30908 30981 74 Locate
psbD gene + 32356 33417 1062 Locate
psbC gene + 33365 34786 1422 Locate
trnS-UGA gene − 35031 35123 93 Locate
psbZ gene + 35462 35650 189 Locate
trnG-GCC gene + 35920 35991 72 Locate
trnM-CAU gene − 36165 36239 75 Locate
rps14 gene − 36389 36691 303 Locate
psaB gene − 36817 39021 2205 Locate
psaA gene − 39047 41299 2253 Locate
ycf3 gene − 42109 44051 1943 Locate
trnS-GGA gene + 44903 44990 88 Locate
rps4 gene − 45277 45882 606 Locate
trnT-UGU gene − 46249 46323 75 Locate
trnL-UAA gene + 47004 47579 576 Locate
trnF-GAA gene + 47872 47945 74 Locate
ndhJ gene − 48583 49059 477 Locate
ndhK gene − 49170 49847 678 Locate
ndhC gene − 49899 50261 363 Locate
trnV-UAC gene − 51230 51875 646 Locate
trnM-CAU gene + 52056 52128 73 Locate
atpE gene − 52339 52740 402 Locate
atpB gene − 52737 54227 1491 Locate
rbcL gene + 54989 56443 1455 Locate
accD gene + 57199 58680 1482 Locate
psaI gene + 59153 59263 111 Locate
ycf4 gene + 59681 60235 555 Locate
cemA gene + 60615 61304 690 Locate
petA gene + 61523 62485 963 Locate
psbJ gene − 63500 63622 123 Locate
psbL gene − 63757 63873 117 Locate
psbF gene − 63897 64016 120 Locate
psbE gene − 64031 64282 252 Locate
petL gene + 65162 65257 96 Locate
petG gene + 65427 65540 114 Locate
trnW-CCA gene − 65655 65728 74 Locate
trnP-UGG gene − 65900 65975 76 Locate
psaJ gene + 66249 66383 135 Locate
rpl33 gene + 66832 67035 204 Locate
rps18 gene + 67186 67491 306 Locate
rpl20 gene − 67724 68110 387 Locate
rps12 gene − 68914 69027 114 Locate
clpP1 gene − 69150 71082 1933 Locate
psbB gene + 71541 73067 1527 Locate
psbT gene + 73261 73362 102 Locate
psbN gene − 73431 73562 132 Locate
psbH gene + 73668 73889 222 Locate
petB gene + 74023 75395 1373 Locate
petD gene + 75583 76772 1190 Locate
rpoA gene − 76966 77973 1008 Locate
rps11 gene − 78044 78460 417 Locate
rpl36 gene − 78570 78683 114 Locate
infA gene − 78779 79012 234 Locate
rps8 gene − 79138 79542 405 Locate
rpl14 gene − 79725 80093 369 Locate
rpl16 gene − 80225 81503 1279 Locate
rps3 gene − 81654 82316 663 Locate
rpl22 gene − 82301 82768 468 Locate
rps19 gene − 82838 83116 279 Locate
rpl2 gene − 83176 84667 1492 Locate
rpl23 gene − 84686 84967 282 Locate
trnM-CAU gene − 85132 85206 75 Locate
ycf2 gene + 85315 92127 6813 Locate
ycf15 gene + 92218 92466 249 Locate
trnL-CAA gene − 92721 92803 83 Locate
ndhB gene − 93363 95570 2208 Locate
rps7 gene − 95836 96303 468 Locate
rps12 gene − 96357 97150 794 Locate
trnV-GAC gene + 98782 98853 72 Locate
rrn16 gene + 99080 100570 1491 Locate
trnE-UUC gene + 100869 101889 1021 Locate
trnA-UGC gene + 101960 102837 878 Locate
rrn23 gene + 103002 105812 2811 Locate
rrn4.5 gene + 105911 106013 103 Locate
rrn5 gene + 106274 106394 121 Locate
trnR-ACG gene + 106638 106712 75 Locate
trnN-GUU gene − 107235 107308 74 Locate
ycf1 gene + 107637 108767 1131 Locate
ndhF gene − 108661 110892 2232 Locate
rpl32 gene + 111334 111504 171 Locate
trnL-UAG gene + 112257 112336 80 Locate
ccsA gene + 112438 113415 978 Locate
ndhD gene − 113672 115174 1503 Locate
psaC gene − 115305 115550 246 Locate
ndhE gene − 115796 116101 306 Locate
ndhG gene − 116316 116846 531 Locate
ndhI gene − 117232 117738 507 Locate
ndhA gene − 117814 119905 2092 Locate
ndhH gene − 119907 121142 1236 Locate
rps15 gene − 121188 121460 273 Locate
ycf1 gene − 121910 127531 5622 Locate
trnN-GUU gene + 127749 127822 74 Locate
trnR-ACG gene − 128345 128419 75 Locate
rrn5 gene − 128663 128783 121 Locate
rrn4.5 gene − 129044 129146 103 Locate
rrn23 gene − 129245 132055 2811 Locate
trnA-UGC gene − 132220 133097 878 Locate
trnE-UUC gene − 133168 134188 1021 Locate
rrn16 gene − 134487 135977 1491 Locate
trnV-GAC gene − 136204 136275 72 Locate
rps12 gene + 137907 138700 794 Locate
rps7 gene + 138754 139221 468 Locate
ndhB gene + 139487 141694 2208 Locate
trnL-CAA gene + 142254 142336 83 Locate
ycf15 gene − 142591 142839 249 Locate
ycf2 gene − 142930 149742 6813 Locate
trnM-CAU gene + 149851 149925 75 Locate
rpl23 gene + 150090 150371 282 Locate
rpl2 gene + 150390 151881 1492 Locate
Status Available
Accession PP024531.1
Length 151,983 bp
GC content 37.8%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources