Clinopodium barosmum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_085322.1 · 11–84 bp · −
psbA · NC_085322.1 · 409–1,467 bp · −
trnK-UUU · NC_085322.1 · 1,688–4,284 bp · −
matK · NC_085322.1 · 2,012–3,547 bp · −
rps16 · NC_085322.1 · 4,821–5,964 bp · −
trnQ-UUG · NC_085322.1 · 6,963–7,034 bp · −
trnS-GCU · NC_085322.1 · 8,261–8,348 bp · −
atpA · NC_085322.1 · 10,157–11,680 bp · −
atpF · NC_085322.1 · 11,779–13,038 bp · −
atpH · NC_085322.1 · 13,311–13,556 bp · −
atpI · NC_085322.1 · 14,578–15,321 bp · −
rps2 · NC_085322.1 · 15,546–16,256 bp · −
rpoC2 · NC_085322.1 · 16,489–20,688 bp · −
rpoC1 · NC_085322.1 · 20,842–23,653 bp · −
rpoB · NC_085322.1 · 23,680–26,892 bp · −
psbM · NC_085322.1 · 29,304–29,408 bp · −
trnD-GUC · NC_085322.1 · 29,927–30,000 bp · −
trnY-GUA · NC_085322.1 · 30,118–30,201 bp · −
trnE-UUC · NC_085322.1 · 30,281–30,353 bp · −
trnS-UGA · NC_085322.1 · 35,055–35,147 bp · −
trnfM-CAU · NC_085322.1 · 36,192–36,265 bp · −
rps14 · NC_085322.1 · 36,420–36,722 bp · −
psaB · NC_085322.1 · 36,845–39,049 bp · −
psaA · NC_085322.1 · 39,075–41,327 bp · −
ycf3 · NC_085322.1 · 42,102–44,058 bp · −
rps4 · NC_085322.1 · 45,296–45,901 bp · −
trnT-UGU · NC_085322.1 · 46,273–46,345 bp · −
ndhJ · NC_085322.1 · 48,607–49,083 bp · −
ndhC · NC_085322.1 · 49,923–50,285 bp · −
trnV-UAC · NC_085322.1 · 51,243–51,895 bp · −
atpE · NC_085322.1 · 52,359–52,760 bp · −
atpB · NC_085322.1 · 52,757–54,247 bp · −
psbJ · NC_085322.1 · 63,778–63,900 bp · −
psbL · NC_085322.1 · 64,035–64,256 bp · −
psbF · NC_085322.1 · 64,175–64,294 bp · −
psbE · NC_085322.1 · 64,309–64,560 bp · −
trnW-CCA · NC_085322.1 · 65,938–66,011 bp · −
trnP-UGG · NC_085322.1 · 66,185–66,258 bp · −
rpl20 · NC_085322.1 · 68,037–68,423 bp · −
rps12 · NC_085322.1 · 69,231–69,344 bp · −
rps12 · NC_085322.1 · 96,638–97,431 bp · −
clpP · NC_085322.1 · 69,483–71,419 bp · −
psbN · NC_085322.1 · 73,760–73,891 bp · −
rpoA · NC_085322.1 · 77,298–78,305 bp · −
rps11 · NC_085322.1 · 78,379–78,795 bp · −
rpl36 · NC_085322.1 · 78,905–79,018 bp · −
infA · NC_085322.1 · 79,114–79,347 bp · −
rps8 · NC_085322.1 · 79,476–79,880 bp · −
rpl14 · NC_085322.1 · 80,065–80,433 bp · −
rpl16 · NC_085322.1 · 80,565–81,844 bp · −
rps3 · NC_085322.1 · 81,994–82,656 bp · −
rpl22 · NC_085322.1 · 82,641–83,108 bp · −
rps19 · NC_085322.1 · 83,178–83,456 bp · −
rpl2 · NC_085322.1 · 83,516–85,004 bp · −
rpl23 · NC_085322.1 · 85,023–85,304 bp · −
trnI-CAU · NC_085322.1 · 85,470–85,543 bp · −
trnL-CAA · NC_085322.1 · 93,003–93,083 bp · −
ndhB · NC_085322.1 · 93,644–95,797 bp · −
rps7 · NC_085322.1 · 96,117–96,584 bp · −
trnN-GUU · NC_085322.1 · 107,531–107,602 bp · −
ndhF · NC_085322.1 · 108,956–111,187 bp · −
ndhD · NC_085322.1 · 113,987–115,516 bp · −
psaC · NC_085322.1 · 115,611–115,856 bp · −
ndhE · NC_085322.1 · 116,104–116,406 bp · −
ndhG · NC_085322.1 · 116,645–117,175 bp · −
ndhI · NC_085322.1 · 117,555–118,061 bp · −
ndhA · NC_085322.1 · 118,137–120,235 bp · −
ndhH · NC_085322.1 · 120,237–121,472 bp · −
rps15 · NC_085322.1 · 121,518–121,790 bp · −
ycf1 · NC_085322.1 · 122,221–127,854 bp · −
trnR-ACG · NC_085322.1 · 128,669–128,742 bp · −
rrn5 · NC_085322.1 · 128,986–129,106 bp · −
rrn4.5 · NC_085322.1 · 129,367–129,469 bp · −
rrn23 · NC_085322.1 · 129,570–132,378 bp · −
trnA-UGC · NC_085322.1 · 132,549–133,426 bp · −
trnI-GAU · NC_085322.1 · 133,497–134,517 bp · −
rrn16 · NC_085322.1 · 134,816–136,306 bp · −
trnV-GAC · NC_085322.1 · 136,533–136,604 bp · −
ycf15 · NC_085322.1 · 142,928–143,125 bp · −
ycf2 · NC_085322.1 · 143,267–150,043 bp · −
psbK · NC_085322.1 · 7,415–7,600 bp · +
psbI · NC_085322.1 · 7,991–8,101 bp · +
trnG-UCC · NC_085322.1 · 9,043–9,795 bp · +
trnR-UCU · NC_085322.1 · 9,977–10,048 bp · +
trnC-GCA · NC_085322.1 · 28,032–28,102 bp · +
petN · NC_085322.1 · 28,263–28,352 bp · +
trnT-GGU · NC_085322.1 · 30,943–31,014 bp · +
psbD · NC_085322.1 · 32,380–33,441 bp · +
psbC · NC_085322.1 · 33,389–34,810 bp · +
psbZ · NC_085322.1 · 35,486–35,674 bp · +
trnG-GCC · NC_085322.1 · 35,946–36,016 bp · +
trnS-GGA · NC_085322.1 · 44,909–44,995 bp · +
trnL-UAA · NC_085322.1 · 47,022–47,599 bp · +
trnF-GAA · NC_085322.1 · 47,891–47,963 bp · +
trnM-CAU · NC_085322.1 · 52,076–52,148 bp · +
rbcL · NC_085322.1 · 55,016–56,470 bp · +
accD · NC_085322.1 · 57,166–58,647 bp · +
psaI · NC_085322.1 · 59,120–59,230 bp · +
ycf4 · NC_085322.1 · 59,678–60,232 bp · +
cemA · NC_085322.1 · 60,880–61,569 bp · +
petA · NC_085322.1 · 61,791–62,753 bp · +
petL · NC_085322.1 · 65,437–65,532 bp · +
petG · NC_085322.1 · 65,702–65,815 bp · +
psaJ · NC_085322.1 · 66,508–66,666 bp · +
rpl33 · NC_085322.1 · 67,118–67,321 bp · +
rps18 · NC_085322.1 · 67,492–67,797 bp · +
rps12 · NC_085322.1 · 138,244–139,037 bp · +
psbB · NC_085322.1 · 71,872–73,398 bp · +
psbT · NC_085322.1 · 73,590–73,691 bp · +
psbH · NC_085322.1 · 73,997–74,218 bp · +
petB · NC_085322.1 · 74,344–75,730 bp · +
petD · NC_085322.1 · 75,918–77,104 bp · +
ycf2 · NC_085322.1 · 85,632–92,408 bp · +
ycf15 · NC_085322.1 · 92,550–92,747 bp · +
trnV-GAC · NC_085322.1 · 99,071–99,142 bp · +
rrn16 · NC_085322.1 · 99,369–100,859 bp · +
trnI-GAU · NC_085322.1 · 101,158–102,178 bp · +
trnA-UGC · NC_085322.1 · 102,249–103,126 bp · +
rrn23 · NC_085322.1 · 103,297–106,105 bp · +
rrn4.5 · NC_085322.1 · 106,206–106,308 bp · +
rrn5 · NC_085322.1 · 106,569–106,689 bp · +
trnR-ACG · NC_085322.1 · 106,933–107,006 bp · +
rpl32 · NC_085322.1 · 111,639–111,809 bp · +
trnL-UAG · NC_085322.1 · 112,575–112,654 bp · +
ccsA · NC_085322.1 · 112,763–113,740 bp · +
trnN-GUU · NC_085322.1 · 128,073–128,144 bp · +
rps7 · NC_085322.1 · 139,091–139,558 bp · +
ndhB · NC_085322.1 · 139,878–142,031 bp · +
trnL-CAA · NC_085322.1 · 142,592–142,672 bp · +
trnI-CAU · NC_085322.1 · 150,132–150,205 bp · +
rpl23 · NC_085322.1 · 150,371–150,652 bp · +
rpl2 · NC_085322.1 · 150,671–152,159 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clinopodium barosmum
ANNOTATED PLASTOME
NC_085322.1
152,261 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38065 76130 114196 152261 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 409 1467 1059 Locate
trnK-UUU gene − 1688 4284 2597 Locate
matK gene − 2012 3547 1536 Locate
rps16 gene − 4821 5964 1144 Locate
trnQ-UUG gene − 6963 7034 72 Locate
psbK gene + 7415 7600 186 Locate
psbI gene + 7991 8101 111 Locate
trnS-GCU gene − 8261 8348 88 Locate
trnG-UCC gene + 9043 9795 753 Locate
trnR-UCU gene + 9977 10048 72 Locate
atpA gene − 10157 11680 1524 Locate
atpF gene − 11779 13038 1260 Locate
atpH gene − 13311 13556 246 Locate
atpI gene − 14578 15321 744 Locate
rps2 gene − 15546 16256 711 Locate
rpoC2 gene − 16489 20688 4200 Locate
rpoC1 gene − 20842 23653 2812 Locate
rpoB gene − 23680 26892 3213 Locate
trnC-GCA gene + 28032 28102 71 Locate
petN gene + 28263 28352 90 Locate
psbM gene − 29304 29408 105 Locate
trnD-GUC gene − 29927 30000 74 Locate
trnY-GUA gene − 30118 30201 84 Locate
trnE-UUC gene − 30281 30353 73 Locate
trnT-GGU gene + 30943 31014 72 Locate
psbD gene + 32380 33441 1062 Locate
psbC gene + 33389 34810 1422 Locate
trnS-UGA gene − 35055 35147 93 Locate
psbZ gene + 35486 35674 189 Locate
trnG-GCC gene + 35946 36016 71 Locate
trnfM-CAU gene − 36192 36265 74 Locate
rps14 gene − 36420 36722 303 Locate
psaB gene − 36845 39049 2205 Locate
psaA gene − 39075 41327 2253 Locate
ycf3 gene − 42102 44058 1957 Locate
trnS-GGA gene + 44909 44995 87 Locate
rps4 gene − 45296 45901 606 Locate
trnT-UGU gene − 46273 46345 73 Locate
trnL-UAA gene + 47022 47599 578 Locate
trnF-GAA gene + 47891 47963 73 Locate
ndhJ gene − 48607 49083 477 Locate
ndhC gene − 49923 50285 363 Locate
trnV-UAC gene − 51243 51895 653 Locate
trnM-CAU gene + 52076 52148 73 Locate
atpE gene − 52359 52760 402 Locate
atpB gene − 52757 54247 1491 Locate
rbcL gene + 55016 56470 1455 Locate
accD gene + 57166 58647 1482 Locate
psaI gene + 59120 59230 111 Locate
ycf4 gene + 59678 60232 555 Locate
cemA gene + 60880 61569 690 Locate
petA gene + 61791 62753 963 Locate
psbJ gene − 63778 63900 123 Locate
psbL gene − 64035 64256 222 Locate
psbF gene − 64175 64294 120 Locate
psbE gene − 64309 64560 252 Locate
petL gene + 65437 65532 96 Locate
petG gene + 65702 65815 114 Locate
trnW-CCA gene − 65938 66011 74 Locate
trnP-UGG gene − 66185 66258 74 Locate
psaJ gene + 66508 66666 159 Locate
rpl33 gene + 67118 67321 204 Locate
rps18 gene + 67492 67797 306 Locate
rpl20 gene − 68037 68423 387 Locate
rps12 gene − 69231 69344 114 Locate
clpP gene − 69483 71419 1937 Locate
psbB gene + 71872 73398 1527 Locate
psbT gene + 73590 73691 102 Locate
psbN gene − 73760 73891 132 Locate
psbH gene + 73997 74218 222 Locate
petB gene + 74344 75730 1387 Locate
petD gene + 75918 77104 1187 Locate
rpoA gene − 77298 78305 1008 Locate
rps11 gene − 78379 78795 417 Locate
rpl36 gene − 78905 79018 114 Locate
infA gene − 79114 79347 234 Locate
rps8 gene − 79476 79880 405 Locate
rpl14 gene − 80065 80433 369 Locate
rpl16 gene − 80565 81844 1280 Locate
rps3 gene − 81994 82656 663 Locate
rpl22 gene − 82641 83108 468 Locate
rps19 gene − 83178 83456 279 Locate
rpl2 gene − 83516 85004 1489 Locate
rpl23 gene − 85023 85304 282 Locate
trnI-CAU gene − 85470 85543 74 Locate
ycf2 gene + 85632 92408 6777 Locate
ycf15 gene + 92550 92747 198 Locate
trnL-CAA gene − 93003 93083 81 Locate
ndhB gene − 93644 95797 2154 Locate
rps7 gene − 96117 96584 468 Locate
rps12 gene − 96638 97431 794 Locate
trnV-GAC gene + 99071 99142 72 Locate
rrn16 gene + 99369 100859 1491 Locate
trnI-GAU gene + 101158 102178 1021 Locate
trnA-UGC gene + 102249 103126 878 Locate
rrn23 gene + 103297 106105 2809 Locate
rrn4.5 gene + 106206 106308 103 Locate
rrn5 gene + 106569 106689 121 Locate
trnR-ACG gene + 106933 107006 74 Locate
trnN-GUU gene − 107531 107602 72 Locate
ndhF gene − 108956 111187 2232 Locate
rpl32 gene + 111639 111809 171 Locate
trnL-UAG gene + 112575 112654 80 Locate
ccsA gene + 112763 113740 978 Locate
ndhD gene − 113987 115516 1530 Locate
psaC gene − 115611 115856 246 Locate
ndhE gene − 116104 116406 303 Locate
ndhG gene − 116645 117175 531 Locate
ndhI gene − 117555 118061 507 Locate
ndhA gene − 118137 120235 2099 Locate
ndhH gene − 120237 121472 1236 Locate
rps15 gene − 121518 121790 273 Locate
ycf1 gene − 122221 127854 5634 Locate
trnN-GUU gene + 128073 128144 72 Locate
trnR-ACG gene − 128669 128742 74 Locate
rrn5 gene − 128986 129106 121 Locate
rrn4.5 gene − 129367 129469 103 Locate
rrn23 gene − 129570 132378 2809 Locate
trnA-UGC gene − 132549 133426 878 Locate
trnI-GAU gene − 133497 134517 1021 Locate
rrn16 gene − 134816 136306 1491 Locate
trnV-GAC gene − 136533 136604 72 Locate
rps12 gene + 138244 139037 794 Locate
rps7 gene + 139091 139558 468 Locate
ndhB gene + 139878 142031 2154 Locate
trnL-CAA gene + 142592 142672 81 Locate
ycf15 gene − 142928 143125 198 Locate
ycf2 gene − 143267 150043 6777 Locate
trnI-CAU gene + 150132 150205 74 Locate
rpl23 gene + 150371 150652 282 Locate
rpl2 gene + 150671 152159 1489 Locate
Status Available
Accession NC_085322.1
Length 152,261 bp
GC content 37.8%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 11 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources