Clinopodium chinense chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_050943.1 · 11–84 bp · −
psbA · NC_050943.1 · 389–1,447 bp · −
trnK-UUU · NC_050943.1 · 1,668–4,258 bp · −
matK · NC_050943.1 · 1,992–3,521 bp · −
rps16 · NC_050943.1 · 4,801–5,938 bp · −
trnQ-UUG · NC_050943.1 · 6,865–6,936 bp · −
trnS-GCU · NC_050943.1 · 8,150–8,237 bp · −
atpA · NC_050943.1 · 10,060–11,583 bp · −
atpF · NC_050943.1 · 11,681–12,936 bp · −
atpH · NC_050943.1 · 13,209–13,454 bp · −
atpI · NC_050943.1 · 14,480–15,223 bp · −
rps2 · NC_050943.1 · 15,448–16,158 bp · −
rpoC2 · NC_050943.1 · 16,382–20,581 bp · −
rpoC1 · NC_050943.1 · 20,742–23,553 bp · −
rpoB · NC_050943.1 · 23,580–26,792 bp · −
psbM · NC_050943.1 · 29,231–29,335 bp · −
trnD-GUC · NC_050943.1 · 29,854–29,927 bp · −
trnY-GUA · NC_050943.1 · 30,046–30,129 bp · −
trnS-UGA · NC_050943.1 · 34,932–35,023 bp · −
trnfM-CAU · NC_050943.1 · 36,056–36,129 bp · −
rps14 · NC_050943.1 · 36,279–36,581 bp · −
psaB · NC_050943.1 · 36,704–38,908 bp · −
psaA · NC_050943.1 · 38,934–41,186 bp · −
ycf3 · NC_050943.1 · 41,970–43,907 bp · −
rps4 · NC_050943.1 · 45,107–45,712 bp · −
trnT-UGU · NC_050943.1 · 46,098–46,170 bp · −
ndhJ · NC_050943.1 · 48,412–48,888 bp · −
ndhK · NC_050943.1 · 48,999–49,676 bp · −
ndhC · NC_050943.1 · 49,728–50,090 bp · −
trnV-UAC · NC_050943.1 · 51,039–51,683 bp · −
atpE · NC_050943.1 · 52,138–52,539 bp · −
atpB · NC_050943.1 · 52,536–54,002 bp · −
psbJ · NC_050943.1 · 63,563–63,685 bp · −
psbL · NC_050943.1 · 63,820–63,936 bp · −
psbF · NC_050943.1 · 63,960–64,079 bp · −
psbE · NC_050943.1 · 64,094–64,345 bp · −
trnW-CCA · NC_050943.1 · 65,716–65,789 bp · −
trnP-UGG · NC_050943.1 · 65,969–66,042 bp · −
rpl20 · NC_050943.1 · 67,829–68,215 bp · −
rps12 · NC_050943.1 · 69,011–69,136 bp · −
rps12 · NC_050943.1 · 96,435–97,225 bp · −
clpP · NC_050943.1 · 69,276–71,206 bp · −
psbN · NC_050943.1 · 73,545–73,676 bp · −
rpoA · NC_050943.1 · 77,062–78,069 bp · −
rps11 · NC_050943.1 · 78,141–78,557 bp · −
rpl36 · NC_050943.1 · 78,667–78,780 bp · −
infA · NC_050943.1 · 78,876–79,109 bp · −
rps8 · NC_050943.1 · 79,235–79,639 bp · −
rpl14 · NC_050943.1 · 79,827–80,195 bp · −
rpl16 · NC_050943.1 · 80,327–81,609 bp · −
rps3 · NC_050943.1 · 81,754–82,416 bp · −
rpl22 · NC_050943.1 · 82,401–82,868 bp · −
rps19 · NC_050943.1 · 82,954–83,235 bp · −
rpl2 · NC_050943.1 · 83,292–84,781 bp · −
rpl23 · NC_050943.1 · 84,800–85,081 bp · −
trnI-CAU · NC_050943.1 · 85,247–85,320 bp · −
trnL-CAA · NC_050943.1 · 92,789–92,869 bp · −
ndhB · NC_050943.1 · 93,441–95,648 bp · −
rps7 · NC_050943.1 · 95,914–96,381 bp · −
trnN-GUU · NC_050943.1 · 107,323–107,394 bp · −
ndhF · NC_050943.1 · 108,748–110,979 bp · −
ndhD · NC_050943.1 · 113,733–115,262 bp · −
psaC · NC_050943.1 · 115,356–115,601 bp · −
ndhE · NC_050943.1 · 115,842–116,147 bp · −
ndhG · NC_050943.1 · 116,371–116,901 bp · −
ndhI · NC_050943.1 · 117,282–117,788 bp · −
ndhA · NC_050943.1 · 117,864–119,950 bp · −
ndhH · NC_050943.1 · 119,952–121,187 bp · −
rps15 · NC_050943.1 · 121,233–121,505 bp · −
ycf1 · NC_050943.1 · 121,936–127,566 bp · −
trnR-ACG · NC_050943.1 · 128,381–128,454 bp · −
rrn5 · NC_050943.1 · 128,698–128,818 bp · −
rrn4.5 · NC_050943.1 · 129,079–129,181 bp · −
rrn23 · NC_050943.1 · 129,280–132,090 bp · −
trnA-UGC · NC_050943.1 · 132,261–133,138 bp · −
trnI-GAU · NC_050943.1 · 133,209–134,227 bp · −
rrn16 · NC_050943.1 · 134,526–136,016 bp · −
trnV-GAC · NC_050943.1 · 136,243–136,314 bp · −
ycf15 · NC_050943.1 · 142,646–142,894 bp · −
ycf2 · NC_050943.1 · 142,985–149,770 bp · −
psbK · NC_050943.1 · 7,318–7,503 bp · +
psbI · NC_050943.1 · 7,894–8,004 bp · +
trnG-UCC · NC_050943.1 · 8,944–9,697 bp · +
trnR-UCU · NC_050943.1 · 9,880–9,951 bp · +
trnC-GCA · NC_050943.1 · 27,942–28,012 bp · +
petN · NC_050943.1 · 28,173–28,262 bp · +
trnT-GGU · NC_050943.1 · 30,833–30,904 bp · +
psbD · NC_050943.1 · 32,257–33,318 bp · +
psbC · NC_050943.1 · 33,266–34,687 bp · +
psbZ · NC_050943.1 · 35,363–35,551 bp · +
trnG-GCC · NC_050943.1 · 35,823–35,893 bp · +
trnS-GGA · NC_050943.1 · 44,729–44,815 bp · +
trnL-UAA · NC_050943.1 · 46,841–47,417 bp · +
trnF-GAA · NC_050943.1 · 47,700–47,772 bp · +
trnM-CAU · NC_050943.1 · 51,870–51,942 bp · +
rbcL · NC_050943.1 · 54,771–56,225 bp · +
accD · NC_050943.1 · 56,922–58,403 bp · +
psaI · NC_050943.1 · 58,895–59,005 bp · +
ycf4 · NC_050943.1 · 59,450–60,004 bp · +
cemA · NC_050943.1 · 60,662–61,351 bp · +
petA · NC_050943.1 · 61,565–62,527 bp · +
petL · NC_050943.1 · 65,217–65,312 bp · +
petG · NC_050943.1 · 65,482–65,595 bp · +
psaJ · NC_050943.1 · 66,320–66,454 bp · +
rpl33 · NC_050943.1 · 66,910–67,113 bp · +
rps18 · NC_050943.1 · 67,284–67,589 bp · +
rps12 · NC_050943.1 · 137,954–138,744 bp · +
psbB · NC_050943.1 · 71,658–73,184 bp · +
psbT · NC_050943.1 · 73,375–73,476 bp · +
psbH · NC_050943.1 · 73,782–74,003 bp · +
petB · NC_050943.1 · 74,129–75,505 bp · +
petD · NC_050943.1 · 75,693–76,879 bp · +
ycf2 · NC_050943.1 · 85,409–92,194 bp · +
ycf15 · NC_050943.1 · 92,285–92,533 bp · +
trnV-GAC · NC_050943.1 · 98,865–98,936 bp · +
rrn16 · NC_050943.1 · 99,163–100,653 bp · +
trnI-GAU · NC_050943.1 · 100,952–101,970 bp · +
trnA-UGC · NC_050943.1 · 102,041–102,918 bp · +
rrn23 · NC_050943.1 · 103,089–105,899 bp · +
rrn4.5 · NC_050943.1 · 105,998–106,100 bp · +
rrn5 · NC_050943.1 · 106,361–106,481 bp · +
trnR-ACG · NC_050943.1 · 106,725–106,798 bp · +
rpl32 · NC_050943.1 · 111,442–111,612 bp · +
trnL-UAG · NC_050943.1 · 112,342–112,421 bp · +
ccsA · NC_050943.1 · 112,522–113,499 bp · +
trnN-GUU · NC_050943.1 · 127,785–127,856 bp · +
rps7 · NC_050943.1 · 138,798–139,265 bp · +
ndhB · NC_050943.1 · 139,531–141,738 bp · +
trnL-CAA · NC_050943.1 · 142,310–142,390 bp · +
trnI-CAU · NC_050943.1 · 149,859–149,932 bp · +
rpl23 · NC_050943.1 · 150,098–150,379 bp · +
rpl2 · NC_050943.1 · 150,398–151,887 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clinopodium chinense
ANNOTATED PLASTOME
NC_050943.1
151,989 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37997 75994 113992 151989 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 389 1447 1059 Locate
trnK-UUU gene − 1668 4258 2591 Locate
matK gene − 1992 3521 1530 Locate
rps16 gene − 4801 5938 1138 Locate
trnQ-UUG gene − 6865 6936 72 Locate
psbK gene + 7318 7503 186 Locate
psbI gene + 7894 8004 111 Locate
trnS-GCU gene − 8150 8237 88 Locate
trnG-UCC gene + 8944 9697 754 Locate
trnR-UCU gene + 9880 9951 72 Locate
atpA gene − 10060 11583 1524 Locate
atpF gene − 11681 12936 1256 Locate
atpH gene − 13209 13454 246 Locate
atpI gene − 14480 15223 744 Locate
rps2 gene − 15448 16158 711 Locate
rpoC2 gene − 16382 20581 4200 Locate
rpoC1 gene − 20742 23553 2812 Locate
rpoB gene − 23580 26792 3213 Locate
trnC-GCA gene + 27942 28012 71 Locate
petN gene + 28173 28262 90 Locate
psbM gene − 29231 29335 105 Locate
trnD-GUC gene − 29854 29927 74 Locate
trnY-GUA gene − 30046 30129 84 Locate
trnT-GGU gene + 30833 30904 72 Locate
psbD gene + 32257 33318 1062 Locate
psbC gene + 33266 34687 1422 Locate
trnS-UGA gene − 34932 35023 92 Locate
psbZ gene + 35363 35551 189 Locate
trnG-GCC gene + 35823 35893 71 Locate
trnfM-CAU gene − 36056 36129 74 Locate
rps14 gene − 36279 36581 303 Locate
psaB gene − 36704 38908 2205 Locate
psaA gene − 38934 41186 2253 Locate
ycf3 gene − 41970 43907 1938 Locate
trnS-GGA gene + 44729 44815 87 Locate
rps4 gene − 45107 45712 606 Locate
trnT-UGU gene − 46098 46170 73 Locate
trnL-UAA gene + 46841 47417 577 Locate
trnF-GAA gene + 47700 47772 73 Locate
ndhJ gene − 48412 48888 477 Locate
ndhK gene − 48999 49676 678 Locate
ndhC gene − 49728 50090 363 Locate
trnV-UAC gene − 51039 51683 645 Locate
trnM-CAU gene + 51870 51942 73 Locate
atpE gene − 52138 52539 402 Locate
atpB gene − 52536 54002 1467 Locate
rbcL gene + 54771 56225 1455 Locate
accD gene + 56922 58403 1482 Locate
psaI gene + 58895 59005 111 Locate
ycf4 gene + 59450 60004 555 Locate
cemA gene + 60662 61351 690 Locate
petA gene + 61565 62527 963 Locate
psbJ gene − 63563 63685 123 Locate
psbL gene − 63820 63936 117 Locate
psbF gene − 63960 64079 120 Locate
psbE gene − 64094 64345 252 Locate
petL gene + 65217 65312 96 Locate
petG gene + 65482 65595 114 Locate
trnW-CCA gene − 65716 65789 74 Locate
trnP-UGG gene − 65969 66042 74 Locate
psaJ gene + 66320 66454 135 Locate
rpl33 gene + 66910 67113 204 Locate
rps18 gene + 67284 67589 306 Locate
rpl20 gene − 67829 68215 387 Locate
rps12 gene − 69011 69136 126 Locate
clpP gene − 69276 71206 1931 Locate
psbB gene + 71658 73184 1527 Locate
psbT gene + 73375 73476 102 Locate
psbN gene − 73545 73676 132 Locate
psbH gene + 73782 74003 222 Locate
petB gene + 74129 75505 1377 Locate
petD gene + 75693 76879 1187 Locate
rpoA gene − 77062 78069 1008 Locate
rps11 gene − 78141 78557 417 Locate
rpl36 gene − 78667 78780 114 Locate
infA gene − 78876 79109 234 Locate
rps8 gene − 79235 79639 405 Locate
rpl14 gene − 79827 80195 369 Locate
rpl16 gene − 80327 81609 1283 Locate
rps3 gene − 81754 82416 663 Locate
rpl22 gene − 82401 82868 468 Locate
rps19 gene − 82954 83235 282 Locate
rpl2 gene − 83292 84781 1490 Locate
rpl23 gene − 84800 85081 282 Locate
trnI-CAU gene − 85247 85320 74 Locate
ycf2 gene + 85409 92194 6786 Locate
ycf15 gene + 92285 92533 249 Locate
trnL-CAA gene − 92789 92869 81 Locate
ndhB gene − 93441 95648 2208 Locate
rps7 gene − 95914 96381 468 Locate
rps12 gene − 96435 97225 791 Locate
trnV-GAC gene + 98865 98936 72 Locate
rrn16 gene + 99163 100653 1491 Locate
trnI-GAU gene + 100952 101970 1019 Locate
trnA-UGC gene + 102041 102918 878 Locate
rrn23 gene + 103089 105899 2811 Locate
rrn4.5 gene + 105998 106100 103 Locate
rrn5 gene + 106361 106481 121 Locate
trnR-ACG gene + 106725 106798 74 Locate
trnN-GUU gene − 107323 107394 72 Locate
ndhF gene − 108748 110979 2232 Locate
rpl32 gene + 111442 111612 171 Locate
trnL-UAG gene + 112342 112421 80 Locate
ccsA gene + 112522 113499 978 Locate
ndhD gene − 113733 115262 1530 Locate
psaC gene − 115356 115601 246 Locate
ndhE gene − 115842 116147 306 Locate
ndhG gene − 116371 116901 531 Locate
ndhI gene − 117282 117788 507 Locate
ndhA gene − 117864 119950 2087 Locate
ndhH gene − 119952 121187 1236 Locate
rps15 gene − 121233 121505 273 Locate
ycf1 gene − 121936 127566 5631 Locate
trnN-GUU gene + 127785 127856 72 Locate
trnR-ACG gene − 128381 128454 74 Locate
rrn5 gene − 128698 128818 121 Locate
rrn4.5 gene − 129079 129181 103 Locate
rrn23 gene − 129280 132090 2811 Locate
trnA-UGC gene − 132261 133138 878 Locate
trnI-GAU gene − 133209 134227 1019 Locate
rrn16 gene − 134526 136016 1491 Locate
trnV-GAC gene − 136243 136314 72 Locate
rps12 gene + 137954 138744 791 Locate
rps7 gene + 138798 139265 468 Locate
ndhB gene + 139531 141738 2208 Locate
trnL-CAA gene + 142310 142390 81 Locate
ycf15 gene − 142646 142894 249 Locate
ycf2 gene − 142985 149770 6786 Locate
trnI-CAU gene + 149859 149932 74 Locate
rpl23 gene + 150098 150379 282 Locate
rpl2 gene + 150398 151887 1490 Locate
Status Available
Accession NC_050943.1
Length 151,989 bp
GC content 37.8%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources