Clinopodium euosmum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
IR
trnH-GUG · NC_071895.1 · 11–84 bp · −
psbA · NC_071895.1 · 398–1,456 bp · −
trnK-UUU · NC_071895.1 · 1,688–4,278 bp · −
matK · NC_071895.1 · 2,012–3,541 bp · −
rps16 · NC_071895.1 · 4,831–5,970 bp · −
trnQ-UUG · NC_071895.1 · 6,925–6,996 bp · −
trnS-GCU · NC_071895.1 · 8,229–8,316 bp · −
atpA · NC_071895.1 · 10,084–11,607 bp · −
atpF · NC_071895.1 · 11,702–12,946 bp · −
atpH · NC_071895.1 · 13,219–13,464 bp · −
atpI · NC_071895.1 · 14,480–15,223 bp · −
rps2 · NC_071895.1 · 15,449–16,159 bp · −
rpoC2 · NC_071895.1 · 16,385–20,578 bp · −
rpoC1 · NC_071895.1 · 20,739–23,550 bp · −
rpoB · NC_071895.1 · 23,577–26,789 bp · −
psbM · NC_071895.1 · 29,208–29,312 bp · −
trnD-GUC · NC_071895.1 · 29,831–29,904 bp · −
trnY-GUA · NC_071895.1 · 30,015–30,098 bp · −
trnE-UUC · NC_071895.1 · 30,177–30,249 bp · −
trnS-UGA · NC_071895.1 · 34,933–35,025 bp · −
trnfM-CAU · NC_071895.1 · 36,058–36,131 bp · −
rps14 · NC_071895.1 · 36,287–36,589 bp · −
psaB · NC_071895.1 · 36,712–38,916 bp · −
psaA · NC_071895.1 · 38,942–41,194 bp · −
ycf3 · NC_071895.1 · 41,958–43,896 bp · −
rps4 · NC_071895.1 · 45,100–45,705 bp · −
trnT-UGU · NC_071895.1 · 46,073–46,145 bp · −
ndhJ · NC_071895.1 · 48,393–48,869 bp · −
ndhK · NC_071895.1 · 48,980–49,657 bp · −
ndhC · NC_071895.1 · 49,709–50,071 bp · −
trnV-UAC · NC_071895.1 · 51,017–51,655 bp · −
atpE · NC_071895.1 · 52,119–52,520 bp · −
atpB · NC_071895.1 · 52,517–54,013 bp · −
psbJ · NC_071895.1 · 63,117–63,239 bp · −
psbL · NC_071895.1 · 63,374–63,595 bp · −
psbF · NC_071895.1 · 63,514–63,633 bp · −
psbE · NC_071895.1 · 63,648–63,899 bp · −
trnW-CCA · NC_071895.1 · 65,268–65,341 bp · −
trnP-UGG · NC_071895.1 · 65,515–65,588 bp · −
rpl20 · NC_071895.1 · 67,375–67,761 bp · −
rps12 · NC_071895.1 · 68,580–68,693 bp · −
rps12 · NC_071895.1 · 95,933–96,726 bp · −
clpP · NC_071895.1 · 68,818–70,744 bp · −
psbN · NC_071895.1 · 73,077–73,208 bp · −
rpoA · NC_071895.1 · 76,604–77,611 bp · −
rps11 · NC_071895.1 · 77,683–78,099 bp · −
rpl36 · NC_071895.1 · 78,209–78,322 bp · −
infA · NC_071895.1 · 78,418–78,651 bp · −
rps8 · NC_071895.1 · 78,776–79,180 bp · −
rpl14 · NC_071895.1 · 79,367–79,735 bp · −
rpl16 · NC_071895.1 · 79,867–81,150 bp · −
rps3 · NC_071895.1 · 81,304–81,966 bp · −
rpl22 · NC_071895.1 · 81,951–82,418 bp · −
rps19 · NC_071895.1 · 82,488–82,766 bp · −
rpl2 · NC_071895.1 · 82,828–84,317 bp · −
rpl23 · NC_071895.1 · 84,336–84,617 bp · −
trnI-CAU · NC_071895.1 · 84,783–84,856 bp · −
trnL-CAA · NC_071895.1 · 92,298–92,378 bp · −
ndhB · NC_071895.1 · 92,939–95,092 bp · −
rps7 · NC_071895.1 · 95,412–95,879 bp · −
trnN-GUU · NC_071895.1 · 106,805–106,876 bp · −
ndhF · NC_071895.1 · 108,230–110,461 bp · −
ndhD · NC_071895.1 · 113,065–114,594 bp · −
psaC · NC_071895.1 · 114,688–114,933 bp · −
ndhE · NC_071895.1 · 115,179–115,481 bp · −
ndhG · NC_071895.1 · 115,708–116,238 bp · −
ndhI · NC_071895.1 · 116,637–117,143 bp · −
ndhA · NC_071895.1 · 117,224–119,309 bp · −
ndhH · NC_071895.1 · 119,311–120,546 bp · −
rps15 · NC_071895.1 · 120,587–120,859 bp · −
ycf1 · NC_071895.1 · 121,266–126,929 bp · −
trnR-ACG · NC_071895.1 · 127,744–127,817 bp · −
rrn5 · NC_071895.1 · 128,061–128,181 bp · −
rrn4.5 · NC_071895.1 · 128,442–128,544 bp · −
rrn23 · NC_071895.1 · 128,645–131,453 bp · −
trnA-UGC · NC_071895.1 · 131,619–132,496 bp · −
trnI-GAU · NC_071895.1 · 132,566–133,584 bp · −
rrn16 · NC_071895.1 · 133,883–135,373 bp · −
trnV-GAC · NC_071895.1 · 135,600–135,671 bp · −
ycf15 · NC_071895.1 · 141,982–142,179 bp · −
ycf2 · NC_071895.1 · 142,321–149,079 bp · −
psbK · NC_071895.1 · 7,377–7,562 bp · +
psbI · NC_071895.1 · 7,957–8,067 bp · +
trnG-UCC · NC_071895.1 · 8,960–9,723 bp · +
trnR-UCU · NC_071895.1 · 9,905–9,976 bp · +
trnC-GCA · NC_071895.1 · 27,928–27,998 bp · +
petN · NC_071895.1 · 28,154–28,243 bp · +
trnT-GGU · NC_071895.1 · 30,814–30,885 bp · +
psbD · NC_071895.1 · 32,253–33,314 bp · +
psbC · NC_071895.1 · 33,262–34,683 bp · +
psbZ · NC_071895.1 · 35,365–35,553 bp · +
trnG-GCC · NC_071895.1 · 35,825–35,895 bp · +
trnS-GGA · NC_071895.1 · 44,731–44,817 bp · +
trnL-UAA · NC_071895.1 · 46,812–47,386 bp · +
trnF-GAA · NC_071895.1 · 47,684–47,756 bp · +
trnM-CAU · NC_071895.1 · 51,836–51,908 bp · +
rbcL · NC_071895.1 · 54,792–56,246 bp · +
accD · NC_071895.1 · 56,894–58,426 bp · +
psaI · NC_071895.1 · 58,899–59,009 bp · +
ycf4 · NC_071895.1 · 59,452–60,006 bp · +
cemA · NC_071895.1 · 60,670–61,359 bp · +
petA · NC_071895.1 · 61,573–62,535 bp · +
petL · NC_071895.1 · 64,771–64,866 bp · +
petG · NC_071895.1 · 65,038–65,151 bp · +
psaJ · NC_071895.1 · 65,816–66,004 bp · +
rpl33 · NC_071895.1 · 66,462–66,665 bp · +
rps18 · NC_071895.1 · 66,836–67,141 bp · +
rps12 · NC_071895.1 · 137,298–138,091 bp · +
psbB · NC_071895.1 · 71,197–72,723 bp · +
psbT · NC_071895.1 · 72,907–73,008 bp · +
psbH · NC_071895.1 · 73,314–73,535 bp · +
petB · NC_071895.1 · 73,661–75,042 bp · +
petD · NC_071895.1 · 75,230–76,421 bp · +
ycf2 · NC_071895.1 · 84,945–91,703 bp · +
ycf15 · NC_071895.1 · 91,845–92,042 bp · +
trnV-GAC · NC_071895.1 · 98,353–98,424 bp · +
rrn16 · NC_071895.1 · 98,651–100,141 bp · +
trnI-GAU · NC_071895.1 · 100,440–101,458 bp · +
trnA-UGC · NC_071895.1 · 101,528–102,405 bp · +
rrn23 · NC_071895.1 · 102,571–105,379 bp · +
rrn4.5 · NC_071895.1 · 105,480–105,582 bp · +
rrn5 · NC_071895.1 · 105,843–105,963 bp · +
trnR-ACG · NC_071895.1 · 106,207–106,280 bp · +
rpl32 · NC_071895.1 · 110,936–111,106 bp · +
trnL-UAG · NC_071895.1 · 111,649–111,728 bp · +
ccsA · NC_071895.1 · 111,832–112,809 bp · +
trnN-GUU · NC_071895.1 · 127,148–127,219 bp · +
rps7 · NC_071895.1 · 138,145–138,612 bp · +
ndhB · NC_071895.1 · 138,932–141,085 bp · +
trnL-CAA · NC_071895.1 · 141,646–141,726 bp · +
trnI-CAU · NC_071895.1 · 149,168–149,241 bp · +
rpl23 · NC_071895.1 · 149,407–149,688 bp · +
rpl2 · NC_071895.1 · 149,707–151,196 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clinopodium euosmum
ANNOTATED PLASTOME
NC_071895.1
151,300 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37825 75650 113475 151300 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 398 1456 1059 Locate
trnK-UUU gene − 1688 4278 2591 Locate
matK gene − 2012 3541 1530 Locate
rps16 gene − 4831 5970 1140 Locate
trnQ-UUG gene − 6925 6996 72 Locate
psbK gene + 7377 7562 186 Locate
psbI gene + 7957 8067 111 Locate
trnS-GCU gene − 8229 8316 88 Locate
trnG-UCC gene + 8960 9723 764 Locate
trnR-UCU gene + 9905 9976 72 Locate
atpA gene − 10084 11607 1524 Locate
atpF gene − 11702 12946 1245 Locate
atpH gene − 13219 13464 246 Locate
atpI gene − 14480 15223 744 Locate
rps2 gene − 15449 16159 711 Locate
rpoC2 gene − 16385 20578 4194 Locate
rpoC1 gene − 20739 23550 2812 Locate
rpoB gene − 23577 26789 3213 Locate
trnC-GCA gene + 27928 27998 71 Locate
petN gene + 28154 28243 90 Locate
psbM gene − 29208 29312 105 Locate
trnD-GUC gene − 29831 29904 74 Locate
trnY-GUA gene − 30015 30098 84 Locate
trnE-UUC gene − 30177 30249 73 Locate
trnT-GGU gene + 30814 30885 72 Locate
psbD gene + 32253 33314 1062 Locate
psbC gene + 33262 34683 1422 Locate
trnS-UGA gene − 34933 35025 93 Locate
psbZ gene + 35365 35553 189 Locate
trnG-GCC gene + 35825 35895 71 Locate
trnfM-CAU gene − 36058 36131 74 Locate
rps14 gene − 36287 36589 303 Locate
psaB gene − 36712 38916 2205 Locate
psaA gene − 38942 41194 2253 Locate
ycf3 gene − 41958 43896 1939 Locate
trnS-GGA gene + 44731 44817 87 Locate
rps4 gene − 45100 45705 606 Locate
trnT-UGU gene − 46073 46145 73 Locate
trnL-UAA gene + 46812 47386 575 Locate
trnF-GAA gene + 47684 47756 73 Locate
ndhJ gene − 48393 48869 477 Locate
ndhK gene − 48980 49657 678 Locate
ndhC gene − 49709 50071 363 Locate
trnV-UAC gene − 51017 51655 639 Locate
trnM-CAU gene + 51836 51908 73 Locate
atpE gene − 52119 52520 402 Locate
atpB gene − 52517 54013 1497 Locate
rbcL gene + 54792 56246 1455 Locate
accD gene + 56894 58426 1533 Locate
psaI gene + 58899 59009 111 Locate
ycf4 gene + 59452 60006 555 Locate
cemA gene + 60670 61359 690 Locate
petA gene + 61573 62535 963 Locate
psbJ gene − 63117 63239 123 Locate
psbL gene − 63374 63595 222 Locate
psbF gene − 63514 63633 120 Locate
psbE gene − 63648 63899 252 Locate
petL gene + 64771 64866 96 Locate
petG gene + 65038 65151 114 Locate
trnW-CCA gene − 65268 65341 74 Locate
trnP-UGG gene − 65515 65588 74 Locate
psaJ gene + 65816 66004 189 Locate
rpl33 gene + 66462 66665 204 Locate
rps18 gene + 66836 67141 306 Locate
rpl20 gene − 67375 67761 387 Locate
rps12 gene − 68580 68693 114 Locate
clpP gene − 68818 70744 1927 Locate
psbB gene + 71197 72723 1527 Locate
psbT gene + 72907 73008 102 Locate
psbN gene − 73077 73208 132 Locate
psbH gene + 73314 73535 222 Locate
petB gene + 73661 75042 1382 Locate
petD gene + 75230 76421 1192 Locate
rpoA gene − 76604 77611 1008 Locate
rps11 gene − 77683 78099 417 Locate
rpl36 gene − 78209 78322 114 Locate
infA gene − 78418 78651 234 Locate
rps8 gene − 78776 79180 405 Locate
rpl14 gene − 79367 79735 369 Locate
rpl16 gene − 79867 81150 1284 Locate
rps3 gene − 81304 81966 663 Locate
rpl22 gene − 81951 82418 468 Locate
rps19 gene − 82488 82766 279 Locate
rpl2 gene − 82828 84317 1490 Locate
rpl23 gene − 84336 84617 282 Locate
trnI-CAU gene − 84783 84856 74 Locate
ycf2 gene + 84945 91703 6759 Locate
ycf15 gene + 91845 92042 198 Locate
trnL-CAA gene − 92298 92378 81 Locate
ndhB gene − 92939 95092 2154 Locate
rps7 gene − 95412 95879 468 Locate
rps12 gene − 95933 96726 794 Locate
trnV-GAC gene + 98353 98424 72 Locate
rrn16 gene + 98651 100141 1491 Locate
trnI-GAU gene + 100440 101458 1019 Locate
trnA-UGC gene + 101528 102405 878 Locate
rrn23 gene + 102571 105379 2809 Locate
rrn4.5 gene + 105480 105582 103 Locate
rrn5 gene + 105843 105963 121 Locate
trnR-ACG gene + 106207 106280 74 Locate
trnN-GUU gene − 106805 106876 72 Locate
ndhF gene − 108230 110461 2232 Locate
rpl32 gene + 110936 111106 171 Locate
trnL-UAG gene + 111649 111728 80 Locate
ccsA gene + 111832 112809 978 Locate
ndhD gene − 113065 114594 1530 Locate
psaC gene − 114688 114933 246 Locate
ndhE gene − 115179 115481 303 Locate
ndhG gene − 115708 116238 531 Locate
ndhI gene − 116637 117143 507 Locate
ndhA gene − 117224 119309 2086 Locate
ndhH gene − 119311 120546 1236 Locate
rps15 gene − 120587 120859 273 Locate
ycf1 gene − 121266 126929 5664 Locate
trnN-GUU gene + 127148 127219 72 Locate
trnR-ACG gene − 127744 127817 74 Locate
rrn5 gene − 128061 128181 121 Locate
rrn4.5 gene − 128442 128544 103 Locate
rrn23 gene − 128645 131453 2809 Locate
trnA-UGC gene − 131619 132496 878 Locate
trnI-GAU gene − 132566 133584 1019 Locate
rrn16 gene − 133883 135373 1491 Locate
trnV-GAC gene − 135600 135671 72 Locate
rps12 gene + 137298 138091 794 Locate
rps7 gene + 138145 138612 468 Locate
ndhB gene + 138932 141085 2154 Locate
trnL-CAA gene + 141646 141726 81 Locate
ycf15 gene − 141982 142179 198 Locate
ycf2 gene − 142321 149079 6759 Locate
trnI-CAU gene + 149168 149241 74 Locate
rpl23 gene + 149407 149688 282 Locate
rpl2 gene + 149707 151196 1490 Locate
Status Available
Accession NC_071895.1
Length 151,300 bp
GC content 37.9%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 3
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources