Colquhounia coccinea var. mollis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
psbA · MN165115.1 · 30–1,088 bp · −
trnK-UUU · MN165115.1 · 1,321–3,910 bp · −
matK · MN165115.1 · 1,625–3,160 bp · −
rps16 · MN165115.1 · 4,682–5,822 bp · −
trnQ-UUG · MN165115.1 · 6,980–7,052 bp · −
trnS-GCU · MN165115.1 · 8,186–8,273 bp · −
atpA · MN165115.1 · 10,071–11,594 bp · −
atpF · MN165115.1 · 11,683–12,907 bp · −
atpH · MN165115.1 · 13,277–13,522 bp · −
atpI · MN165115.1 · 14,539–15,282 bp · −
rps2 · MN165115.1 · 15,513–16,223 bp · −
rpoC2 · MN165115.1 · 16,444–20,634 bp · −
rpoC1 · MN165115.1 · 20,789–23,627 bp · −
rpoB · MN165115.1 · 23,654–26,866 bp · −
psbM · MN165115.1 · 29,825–29,929 bp · −
trnD-GUC · MN165115.1 · 30,453–30,526 bp · −
trnY-GUA · MN165115.1 · 30,641–30,724 bp · −
trnE-UUC · MN165115.1 · 30,784–30,856 bp · −
trnS-UGA · MN165115.1 · 35,375–35,467 bp · −
trnfM-CAU · MN165115.1 · 36,425–36,498 bp · −
rps14 · MN165115.1 · 36,648–36,950 bp · −
psaB · MN165115.1 · 37,078–39,282 bp · −
psaA · MN165115.1 · 39,308–41,560 bp · −
ycf3 · MN165115.1 · 42,289–44,235 bp · −
rps4 · MN165115.1 · 44,938–45,543 bp · −
trnT-UGU · MN165115.1 · 45,936–46,008 bp · −
ndhJ · MN165115.1 · 48,299–48,793 bp · −
ndhK · MN165115.1 · 48,876–49,727 bp · −
ndhC · MN165115.1 · 49,607–49,969 bp · −
trnV-UAC · MN165115.1 · 50,914–51,566 bp · −
atpE · MN165115.1 · 52,052–52,453 bp · −
atpB · MN165115.1 · 52,450–53,946 bp · −
psbJ · MN165115.1 · 63,618–63,740 bp · −
psbL · MN165115.1 · 63,878–63,994 bp · −
psbF · MN165115.1 · 64,018–64,137 bp · −
psbE · MN165115.1 · 64,152–64,403 bp · −
trnW-CCA · MN165115.1 · 65,442–65,515 bp · −
trnP-UGG · MN165115.1 · 65,685–65,758 bp · −
rpl20 · MN165115.1 · 67,533–67,919 bp · −
rps12 · MN165115.1 · 68,668–68,793 bp · −
rps12 · MN165115.1 · 96,034–96,827 bp · −
clpP · MN165115.1 · 68,921–70,798 bp · −
psbN · MN165115.1 · 73,125–73,256 bp · −
rpoA · MN165115.1 · 76,656–77,669 bp · −
rps11 · MN165115.1 · 77,741–78,172 bp · −
rpl36 · MN165115.1 · 78,260–78,373 bp · −
infA · MN165115.1 · 78,469–78,702 bp · −
rps8 · MN165115.1 · 78,826–79,239 bp · −
rpl14 · MN165115.1 · 79,414–79,782 bp · −
rpl16 · MN165115.1 · 79,909–81,216 bp · −
rps3 · MN165115.1 · 81,363–82,025 bp · −
rpl22 · MN165115.1 · 82,010–82,474 bp · −
rps19 · MN165115.1 · 82,534–82,812 bp · −
rpl2 · MN165115.1 · 82,865–84,356 bp · −
rpl23 · MN165115.1 · 84,375–84,656 bp · −
trnI-CAU · MN165115.1 · 84,822–84,895 bp · −
trnL-CAA · MN165115.1 · 92,402–92,482 bp · −
ndhB · MN165115.1 · 93,027–95,238 bp · −
rps7 · MN165115.1 · 95,513–95,980 bp · −
trnN-GUU · MN165115.1 · 106,933–107,004 bp · −
ndhF · MN165115.1 · 108,394–110,616 bp · −
ndhD · MN165115.1 · 113,168–114,670 bp · −
psaC · MN165115.1 · 114,796–115,041 bp · −
ndhE · MN165115.1 · 115,304–115,609 bp · −
ndhG · MN165115.1 · 115,825–116,355 bp · −
ndhI · MN165115.1 · 116,735–117,241 bp · −
ndhA · MN165115.1 · 117,322–119,495 bp · −
ndhH · MN165115.1 · 119,497–120,678 bp · −
rps15 · MN165115.1 · 120,779–121,114 bp · −
ycf1 · MN165115.1 · 121,453–127,011 bp · −
trnR-ACG · MN165115.1 · 127,981–128,054 bp · −
rrn5 · MN165115.1 · 128,289–128,409 bp · −
rrn4.5 · MN165115.1 · 128,665–128,767 bp · −
rrn23 · MN165115.1 · 128,866–131,675 bp · −
trnA-UGC · MN165115.1 · 131,868–132,746 bp · −
trnI-GAU · MN165115.1 · 132,811–133,818 bp · −
rrn16 · MN165115.1 · 134,108–135,598 bp · −
trnV-GAC · MN165115.1 · 135,826–135,897 bp · −
ycf2 · MN165115.1 · 142,491–149,357 bp · −
trnH-GUG · MN165115.1 · 151,572–151,646 bp · −
psbK · MN165115.1 · 7,389–7,574 bp · +
psbI · MN165115.1 · 7,952–8,062 bp · +
trnG-GCC · MN165115.1 · 8,965–9,725 bp · +
trnR-UCU · MN165115.1 · 9,903–9,974 bp · +
trnC-GCA · MN165115.1 · 28,034–28,114 bp · +
petN · MN165115.1 · 28,940–29,035 bp · +
trnT-GGU · MN165115.1 · 31,417–31,488 bp · +
psbD · MN165115.1 · 32,714–33,775 bp · +
psbC · MN165115.1 · 33,723–35,144 bp · +
lhbA · MN165115.1 · 35,793–35,981 bp · +
trnG-UCC · MN165115.1 · 36,205–36,275 bp · +
trnS-GGA · MN165115.1 · 44,562–44,648 bp · +
trnL-UAA · MN165115.1 · 46,689–47,262 bp · +
trnF-GAA · MN165115.1 · 47,562–47,634 bp · +
trnM-CAU · MN165115.1 · 51,756–51,827 bp · +
rbcL · MN165115.1 · 54,735–56,201 bp · +
accD · MN165115.1 · 56,891–58,357 bp · +
psaI · MN165115.1 · 59,044–59,154 bp · +
ycf4 · MN165115.1 · 59,588–60,142 bp · +
cemA · MN165115.1 · 60,698–61,387 bp · +
petA · MN165115.1 · 61,604–62,566 bp · +
petL · MN165115.1 · 64,933–65,028 bp · +
petG · MN165115.1 · 65,203–65,316 bp · +
psaJ · MN165115.1 · 66,034–66,168 bp · +
rpl33 · MN165115.1 · 66,639–66,839 bp · +
rps18 · MN165115.1 · 67,010–67,315 bp · +
rps12 · MN165115.1 · 137,514–138,307 bp · +
psbB · MN165115.1 · 71,236–72,762 bp · +
psbT · MN165115.1 · 72,957–73,064 bp · +
psbH · MN165115.1 · 73,360–73,581 bp · +
petB · MN165115.1 · 73,706–75,085 bp · +
petD · MN165115.1 · 75,280–76,493 bp · +
ycf2 · MN165115.1 · 84,984–91,850 bp · +
trnV-GAC · MN165115.1 · 98,444–98,515 bp · +
rrn16 · MN165115.1 · 98,743–100,233 bp · +
trnI-GAU · MN165115.1 · 100,523–101,530 bp · +
trnA-UGC · MN165115.1 · 101,595–102,473 bp · +
rrn23 · MN165115.1 · 102,666–105,475 bp · +
rrn4.5 · MN165115.1 · 105,574–105,676 bp · +
rrn5 · MN165115.1 · 105,932–106,052 bp · +
trnR-ACG · MN165115.1 · 106,287–106,360 bp · +
rpl32 · MN165115.1 · 110,949–111,125 bp · +
trnL-UAG · MN165115.1 · 111,852–111,931 bp · +
ccsA · MN165115.1 · 112,015–112,986 bp · +
trnN-GUU · MN165115.1 · 127,337–127,408 bp · +
rps7 · MN165115.1 · 138,361–138,828 bp · +
ndhB · MN165115.1 · 139,103–141,314 bp · +
trnL-CAA · MN165115.1 · 141,859–141,939 bp · +
trnI-CAU · MN165115.1 · 149,446–149,519 bp · +
rpl23 · MN165115.1 · 149,685–149,966 bp · +
rpl2 · MN165115.1 · 149,985–151,476 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Colquhounia coccinea var. mollis
ANNOTATED PLASTOME
MN165115.1
151,965 bp · 130 genes
Gene function
Photosystem II
Transfer RNA
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37991 75982 113974 151965 bp
Forward strand 5′ → 3′
psbK psbI trnG-GCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC lhbA trnG-UCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2 trnH-GUG
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
psbA gene − 30 1088 1059 Locate
trnK-UUU gene − 1321 3910 2590 Locate
matK gene − 1625 3160 1536 Locate
rps16 gene − 4682 5822 1141 Locate
trnQ-UUG gene − 6980 7052 73 Locate
psbK gene + 7389 7574 186 Locate
psbI gene + 7952 8062 111 Locate
trnS-GCU gene − 8186 8273 88 Locate
trnG-GCC gene + 8965 9725 761 Locate
trnR-UCU gene + 9903 9974 72 Locate
atpA gene − 10071 11594 1524 Locate
atpF gene − 11683 12907 1225 Locate
atpH gene − 13277 13522 246 Locate
atpI gene − 14539 15282 744 Locate
rps2 gene − 15513 16223 711 Locate
rpoC2 gene − 16444 20634 4191 Locate
rpoC1 gene − 20789 23627 2839 Locate
rpoB gene − 23654 26866 3213 Locate
trnC-GCA gene + 28034 28114 81 Locate
petN gene + 28940 29035 96 Locate
psbM gene − 29825 29929 105 Locate
trnD-GUC gene − 30453 30526 74 Locate
trnY-GUA gene − 30641 30724 84 Locate
trnE-UUC gene − 30784 30856 73 Locate
trnT-GGU gene + 31417 31488 72 Locate
psbD gene + 32714 33775 1062 Locate
psbC gene + 33723 35144 1422 Locate
trnS-UGA gene − 35375 35467 93 Locate
lhbA gene + 35793 35981 189 Locate
trnG-UCC gene + 36205 36275 71 Locate
trnfM-CAU gene − 36425 36498 74 Locate
rps14 gene − 36648 36950 303 Locate
psaB gene − 37078 39282 2205 Locate
psaA gene − 39308 41560 2253 Locate
ycf3 gene − 42289 44235 1947 Locate
trnS-GGA gene + 44562 44648 87 Locate
rps4 gene − 44938 45543 606 Locate
trnT-UGU gene − 45936 46008 73 Locate
trnL-UAA gene + 46689 47262 574 Locate
trnF-GAA gene + 47562 47634 73 Locate
ndhJ gene − 48299 48793 495 Locate
ndhK gene − 48876 49727 852 Locate
ndhC gene − 49607 49969 363 Locate
trnV-UAC gene − 50914 51566 653 Locate
trnM-CAU gene + 51756 51827 72 Locate
atpE gene − 52052 52453 402 Locate
atpB gene − 52450 53946 1497 Locate
rbcL gene + 54735 56201 1467 Locate
accD gene + 56891 58357 1467 Locate
psaI gene + 59044 59154 111 Locate
ycf4 gene + 59588 60142 555 Locate
cemA gene + 60698 61387 690 Locate
petA gene + 61604 62566 963 Locate
psbJ gene − 63618 63740 123 Locate
psbL gene − 63878 63994 117 Locate
psbF gene − 64018 64137 120 Locate
psbE gene − 64152 64403 252 Locate
petL gene + 64933 65028 96 Locate
petG gene + 65203 65316 114 Locate
trnW-CCA gene − 65442 65515 74 Locate
trnP-UGG gene − 65685 65758 74 Locate
psaJ gene + 66034 66168 135 Locate
rpl33 gene + 66639 66839 201 Locate
rps18 gene + 67010 67315 306 Locate
rpl20 gene − 67533 67919 387 Locate
rps12 gene − 68668 68793 126 Locate
clpP gene − 68921 70798 1878 Locate
psbB gene + 71236 72762 1527 Locate
psbT gene + 72957 73064 108 Locate
psbN gene − 73125 73256 132 Locate
psbH gene + 73360 73581 222 Locate
petB gene + 73706 75085 1380 Locate
petD gene + 75280 76493 1214 Locate
rpoA gene − 76656 77669 1014 Locate
rps11 gene − 77741 78172 432 Locate
rpl36 gene − 78260 78373 114 Locate
infA gene − 78469 78702 234 Locate
rps8 gene − 78826 79239 414 Locate
rpl14 gene − 79414 79782 369 Locate
rpl16 gene − 79909 81216 1308 Locate
rps3 gene − 81363 82025 663 Locate
rpl22 gene − 82010 82474 465 Locate
rps19 gene − 82534 82812 279 Locate
rpl2 gene − 82865 84356 1492 Locate
rpl23 gene − 84375 84656 282 Locate
trnI-CAU gene − 84822 84895 74 Locate
ycf2 gene + 84984 91850 6867 Locate
trnL-CAA gene − 92402 92482 81 Locate
ndhB gene − 93027 95238 2212 Locate
rps7 gene − 95513 95980 468 Locate
rps12 gene − 96034 96827 794 Locate
trnV-GAC gene + 98444 98515 72 Locate
rrn16 gene + 98743 100233 1491 Locate
trnI-GAU gene + 100523 101530 1008 Locate
trnA-UGC gene + 101595 102473 879 Locate
rrn23 gene + 102666 105475 2810 Locate
rrn4.5 gene + 105574 105676 103 Locate
rrn5 gene + 105932 106052 121 Locate
trnR-ACG gene + 106287 106360 74 Locate
trnN-GUU gene − 106933 107004 72 Locate
ndhF gene − 108394 110616 2223 Locate
rpl32 gene + 110949 111125 177 Locate
trnL-UAG gene + 111852 111931 80 Locate
ccsA gene + 112015 112986 972 Locate
ndhD gene − 113168 114670 1503 Locate
psaC gene − 114796 115041 246 Locate
ndhE gene − 115304 115609 306 Locate
ndhG gene − 115825 116355 531 Locate
ndhI gene − 116735 117241 507 Locate
ndhA gene − 117322 119495 2174 Locate
ndhH gene − 119497 120678 1182 Locate
rps15 gene − 120779 121114 336 Locate
ycf1 gene − 121453 127011 5559 Locate
trnN-GUU gene + 127337 127408 72 Locate
trnR-ACG gene − 127981 128054 74 Locate
rrn5 gene − 128289 128409 121 Locate
rrn4.5 gene − 128665 128767 103 Locate
rrn23 gene − 128866 131675 2810 Locate
trnA-UGC gene − 131868 132746 879 Locate
trnI-GAU gene − 132811 133818 1008 Locate
rrn16 gene − 134108 135598 1491 Locate
trnV-GAC gene − 135826 135897 72 Locate
rps12 gene + 137514 138307 794 Locate
rps7 gene + 138361 138828 468 Locate
ndhB gene + 139103 141314 2212 Locate
trnL-CAA gene + 141859 141939 81 Locate
ycf2 gene − 142491 149357 6867 Locate
trnI-CAU gene + 149446 149519 74 Locate
rpl23 gene + 149685 149966 282 Locate
rpl2 gene + 149985 151476 1492 Locate
trnH-GUG gene − 151572 151646 75 Locate
Status Available
Accession MN165115.1
Length 151,965 bp
GC content 38.4%
Annotated genes 130
Gene sequence records 8
Photosystem Ii 14 Translation Rna 37 Other 13 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources