Cymaria dichotoma chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_058333.1 · 2–75 bp · −
psbA · NC_058333.1 · 526–1,584 bp · −
trnK-UUU · NC_058333.1 · 1,814–4,403 bp · −
matK · NC_058333.1 · 2,116–3,651 bp · −
rps16 · NC_058333.1 · 5,319–6,480 bp · −
trnQ-UUG · NC_058333.1 · 7,521–7,592 bp · −
trnS-GCU · NC_058333.1 · 8,730–8,817 bp · −
atpA · NC_058333.1 · 10,606–12,129 bp · −
atpF · NC_058333.1 · 12,214–13,455 bp · −
atpH · NC_058333.1 · 13,823–14,068 bp · −
atpI · NC_058333.1 · 15,076–15,819 bp · −
rps2 · NC_058333.1 · 16,044–16,754 bp · −
rpoC2 · NC_058333.1 · 16,978–21,168 bp · −
rpoC1 · NC_058333.1 · 21,323–24,160 bp · −
rpoB · NC_058333.1 · 24,187–27,399 bp · −
psbM · NC_058333.1 · 30,049–30,153 bp · −
trnD-GUC · NC_058333.1 · 30,678–30,751 bp · −
trnY-GUA · NC_058333.1 · 30,866–30,949 bp · −
trnE-UUC · NC_058333.1 · 31,009–31,081 bp · −
trnS-UGA · NC_058333.1 · 35,706–35,798 bp · −
trnfM-CAU · NC_058333.1 · 36,837–36,910 bp · −
rps14 · NC_058333.1 · 37,060–37,362 bp · −
psaB · NC_058333.1 · 37,489–39,693 bp · −
psaA · NC_058333.1 · 39,719–41,971 bp · −
ycf3 · NC_058333.1 · 42,716–44,676 bp · −
rps4 · NC_058333.1 · 45,907–46,512 bp · −
trnT-UGU · NC_058333.1 · 46,925–46,997 bp · −
ndhJ · NC_058333.1 · 49,265–49,759 bp · −
ndhK · NC_058333.1 · 49,842–50,603 bp · −
ndhC · NC_058333.1 · 50,573–50,935 bp · −
trnV-UAC · NC_058333.1 · 51,934–52,588 bp · −
atpE · NC_058333.1 · 53,041–53,442 bp · −
atpB · NC_058333.1 · 53,439–54,935 bp · −
psbJ · NC_058333.1 · 64,669–64,791 bp · −
psbL · NC_058333.1 · 64,925–65,041 bp · −
psbF · NC_058333.1 · 65,065–65,184 bp · −
psbE · NC_058333.1 · 65,199–65,450 bp · −
trnW-CCA · NC_058333.1 · 66,894–66,967 bp · −
trnP-UGG · NC_058333.1 · 67,137–67,210 bp · −
rpl20 · NC_058333.1 · 69,017–69,373 bp · −
rps12 · NC_058333.1 · 70,205–70,318 bp · −
rps12 · NC_058333.1 · 97,592–98,385 bp · −
clpP · NC_058333.1 · 70,448–72,413 bp · −
psbN · NC_058333.1 · 74,741–74,872 bp · −
rpoA · NC_058333.1 · 78,211–79,224 bp · −
rps11 · NC_058333.1 · 79,296–79,703 bp · −
rpl36 · NC_058333.1 · 79,805–79,918 bp · −
infA · NC_058333.1 · 80,014–80,247 bp · −
rps8 · NC_058333.1 · 80,374–80,787 bp · −
rpl14 · NC_058333.1 · 80,971–81,339 bp · −
rpl16 · NC_058333.1 · 81,474–82,770 bp · −
rps3 · NC_058333.1 · 82,923–83,585 bp · −
rpl22 · NC_058333.1 · 83,570–84,034 bp · −
rps19 · NC_058333.1 · 84,095–84,373 bp · −
rpl2 · NC_058333.1 · 84,429–85,918 bp · −
rpl23 · NC_058333.1 · 85,937–86,218 bp · −
trnI-CAU · NC_058333.1 · 86,384–86,457 bp · −
trnL-CAA · NC_058333.1 · 93,952–94,032 bp · −
ndhB · NC_058333.1 · 94,577–96,796 bp · −
rps7 · NC_058333.1 · 97,071–97,538 bp · −
trnN-GUU · NC_058333.1 · 108,299–108,370 bp · −
ndhF · NC_058333.1 · 109,769–111,991 bp · −
ndhD · NC_058333.1 · 114,796–116,325 bp · −
psaC · NC_058333.1 · 116,422–116,667 bp · −
ndhE · NC_058333.1 · 116,927–117,229 bp · −
ndhG · NC_058333.1 · 117,447–117,977 bp · −
ndhI · NC_058333.1 · 118,329–118,835 bp · −
ndhA · NC_058333.1 · 118,916–121,085 bp · −
ndhH · NC_058333.1 · 121,087–122,268 bp · −
rps15 · NC_058333.1 · 122,369–122,641 bp · −
ycf1 · NC_058333.1 · 123,047–128,695 bp · −
trnR-ACG · NC_058333.1 · 129,562–129,635 bp · −
rrn5 · NC_058333.1 · 129,876–129,996 bp · −
rrn4.5 · NC_058333.1 · 130,221–130,323 bp · −
rrn23 · NC_058333.1 · 130,424–133,232 bp · −
trnA-UGC · NC_058333.1 · 133,412–134,298 bp · −
trnI-GAU · NC_058333.1 · 134,363–135,370 bp · −
rrn16 · NC_058333.1 · 135,659–137,149 bp · −
trnV-GAC · NC_058333.1 · 137,377–137,448 bp · −
ycf15 · NC_058333.1 · 143,604–143,852 bp · −
ycf2 · NC_058333.1 · 143,943–150,743 bp · −
psbK · NC_058333.1 · 7,920–8,114 bp · +
psbI · NC_058333.1 · 8,493–8,603 bp · +
trnG-UCC · NC_058333.1 · 9,500–10,261 bp · +
trnR-UCU · NC_058333.1 · 10,439–10,510 bp · +
trnC-GCA · NC_058333.1 · 28,566–28,636 bp · +
petN · NC_058333.1 · 28,968–29,057 bp · +
trnT-GGU · NC_058333.1 · 31,652–31,723 bp · +
psbD · NC_058333.1 · 33,047–34,108 bp · +
psbC · NC_058333.1 · 34,056–35,477 bp · +
psbZ · NC_058333.1 · 36,124–36,312 bp · +
trnG-GCC · NC_058333.1 · 36,589–36,659 bp · +
trnS-GGA · NC_058333.1 · 45,538–45,624 bp · +
trnL-UAA · NC_058333.1 · 47,675–48,248 bp · +
trnF-GAA · NC_058333.1 · 48,527–48,599 bp · +
trnM-CAU · NC_058333.1 · 52,769–52,841 bp · +
rbcL · NC_058333.1 · 55,721–57,187 bp · +
accD · NC_058333.1 · 57,860–59,341 bp · +
psaI · NC_058333.1 · 60,022–60,132 bp · +
ycf4 · NC_058333.1 · 60,566–61,120 bp · +
cemA · NC_058333.1 · 61,771–62,460 bp · +
petA · NC_058333.1 · 62,666–63,628 bp · +
petL · NC_058333.1 · 66,378–66,473 bp · +
petG · NC_058333.1 · 66,653–66,766 bp · +
psaJ · NC_058333.1 · 67,490–67,624 bp · +
rpl33 · NC_058333.1 · 68,103–68,303 bp · +
rps18 · NC_058333.1 · 68,470–68,775 bp · +
rps12 · NC_058333.1 · 138,904–139,697 bp · +
psbB · NC_058333.1 · 72,854–74,380 bp · +
psbT · NC_058333.1 · 74,573–74,680 bp · +
psbH · NC_058333.1 · 74,976–75,197 bp · +
petB · NC_058333.1 · 75,322–76,679 bp · +
petD · NC_058333.1 · 76,874–78,048 bp · +
ycf2 · NC_058333.1 · 86,546–93,346 bp · +
ycf15 · NC_058333.1 · 93,437–93,685 bp · +
trnV-GAC · NC_058333.1 · 99,841–99,912 bp · +
rrn16 · NC_058333.1 · 100,140–101,630 bp · +
trnI-GAU · NC_058333.1 · 101,919–102,926 bp · +
trnA-UGC · NC_058333.1 · 102,991–103,877 bp · +
rrn23 · NC_058333.1 · 104,057–106,865 bp · +
rrn4.5 · NC_058333.1 · 106,966–107,068 bp · +
rrn5 · NC_058333.1 · 107,293–107,413 bp · +
trnR-ACG · NC_058333.1 · 107,654–107,727 bp · +
rpl32 · NC_058333.1 · 112,493–112,669 bp · +
trnL-UAG · NC_058333.1 · 113,466–113,545 bp · +
ccsA · NC_058333.1 · 113,636–114,619 bp · +
trnN-GUU · NC_058333.1 · 128,919–128,990 bp · +
rps7 · NC_058333.1 · 139,751–140,218 bp · +
ndhB · NC_058333.1 · 140,493–142,712 bp · +
trnL-CAA · NC_058333.1 · 143,257–143,337 bp · +
trnI-CAU · NC_058333.1 · 150,832–150,905 bp · +
rpl23 · NC_058333.1 · 151,071–151,352 bp · +
rpl2 · NC_058333.1 · 151,371–152,860 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Cymaria dichotoma
ANNOTATED PLASTOME
NC_058333.1
152,957 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38239 76478 114718 152957 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 526 1584 1059 Locate
trnK-UUU gene − 1814 4403 2590 Locate
matK gene − 2116 3651 1536 Locate
rps16 gene − 5319 6480 1162 Locate
trnQ-UUG gene − 7521 7592 72 Locate
psbK gene + 7920 8114 195 Locate
psbI gene + 8493 8603 111 Locate
trnS-GCU gene − 8730 8817 88 Locate
trnG-UCC gene + 9500 10261 762 Locate
trnR-UCU gene + 10439 10510 72 Locate
atpA gene − 10606 12129 1524 Locate
atpF gene − 12214 13455 1242 Locate
atpH gene − 13823 14068 246 Locate
atpI gene − 15076 15819 744 Locate
rps2 gene − 16044 16754 711 Locate
rpoC2 gene − 16978 21168 4191 Locate
rpoC1 gene − 21323 24160 2838 Locate
rpoB gene − 24187 27399 3213 Locate
trnC-GCA gene + 28566 28636 71 Locate
petN gene + 28968 29057 90 Locate
psbM gene − 30049 30153 105 Locate
trnD-GUC gene − 30678 30751 74 Locate
trnY-GUA gene − 30866 30949 84 Locate
trnE-UUC gene − 31009 31081 73 Locate
trnT-GGU gene + 31652 31723 72 Locate
psbD gene + 33047 34108 1062 Locate
psbC gene + 34056 35477 1422 Locate
trnS-UGA gene − 35706 35798 93 Locate
psbZ gene + 36124 36312 189 Locate
trnG-GCC gene + 36589 36659 71 Locate
trnfM-CAU gene − 36837 36910 74 Locate
rps14 gene − 37060 37362 303 Locate
psaB gene − 37489 39693 2205 Locate
psaA gene − 39719 41971 2253 Locate
ycf3 gene − 42716 44676 1961 Locate
trnS-GGA gene + 45538 45624 87 Locate
rps4 gene − 45907 46512 606 Locate
trnT-UGU gene − 46925 46997 73 Locate
trnL-UAA gene + 47675 48248 574 Locate
trnF-GAA gene + 48527 48599 73 Locate
ndhJ gene − 49265 49759 495 Locate
ndhK gene − 49842 50603 762 Locate
ndhC gene − 50573 50935 363 Locate
trnV-UAC gene − 51934 52588 655 Locate
trnM-CAU gene + 52769 52841 73 Locate
atpE gene − 53041 53442 402 Locate
atpB gene − 53439 54935 1497 Locate
rbcL gene + 55721 57187 1467 Locate
accD gene + 57860 59341 1482 Locate
psaI gene + 60022 60132 111 Locate
ycf4 gene + 60566 61120 555 Locate
cemA gene + 61771 62460 690 Locate
petA gene + 62666 63628 963 Locate
psbJ gene − 64669 64791 123 Locate
psbL gene − 64925 65041 117 Locate
psbF gene − 65065 65184 120 Locate
psbE gene − 65199 65450 252 Locate
petL gene + 66378 66473 96 Locate
petG gene + 66653 66766 114 Locate
trnW-CCA gene − 66894 66967 74 Locate
trnP-UGG gene − 67137 67210 74 Locate
psaJ gene + 67490 67624 135 Locate
rpl33 gene + 68103 68303 201 Locate
rps18 gene + 68470 68775 306 Locate
rpl20 gene − 69017 69373 357 Locate
rps12 gene − 70205 70318 114 Locate
clpP gene − 70448 72413 1966 Locate
psbB gene + 72854 74380 1527 Locate
psbT gene + 74573 74680 108 Locate
psbN gene − 74741 74872 132 Locate
psbH gene + 74976 75197 222 Locate
petB gene + 75322 76679 1358 Locate
petD gene + 76874 78048 1175 Locate
rpoA gene − 78211 79224 1014 Locate
rps11 gene − 79296 79703 408 Locate
rpl36 gene − 79805 79918 114 Locate
infA gene − 80014 80247 234 Locate
rps8 gene − 80374 80787 414 Locate
rpl14 gene − 80971 81339 369 Locate
rpl16 gene − 81474 82770 1297 Locate
rps3 gene − 82923 83585 663 Locate
rpl22 gene − 83570 84034 465 Locate
rps19 gene − 84095 84373 279 Locate
rpl2 gene − 84429 85918 1490 Locate
rpl23 gene − 85937 86218 282 Locate
trnI-CAU gene − 86384 86457 74 Locate
ycf2 gene + 86546 93346 6801 Locate
ycf15 gene + 93437 93685 249 Locate
trnL-CAA gene − 93952 94032 81 Locate
ndhB gene − 94577 96796 2220 Locate
rps7 gene − 97071 97538 468 Locate
rps12 gene − 97592 98385 794 Locate
trnV-GAC gene + 99841 99912 72 Locate
rrn16 gene + 100140 101630 1491 Locate
trnI-GAU gene + 101919 102926 1008 Locate
trnA-UGC gene + 102991 103877 887 Locate
rrn23 gene + 104057 106865 2809 Locate
rrn4.5 gene + 106966 107068 103 Locate
rrn5 gene + 107293 107413 121 Locate
trnR-ACG gene + 107654 107727 74 Locate
trnN-GUU gene − 108299 108370 72 Locate
ndhF gene − 109769 111991 2223 Locate
rpl32 gene + 112493 112669 177 Locate
trnL-UAG gene + 113466 113545 80 Locate
ccsA gene + 113636 114619 984 Locate
ndhD gene − 114796 116325 1530 Locate
psaC gene − 116422 116667 246 Locate
ndhE gene − 116927 117229 303 Locate
ndhG gene − 117447 117977 531 Locate
ndhI gene − 118329 118835 507 Locate
ndhA gene − 118916 121085 2170 Locate
ndhH gene − 121087 122268 1182 Locate
rps15 gene − 122369 122641 273 Locate
ycf1 gene − 123047 128695 5649 Locate
trnN-GUU gene + 128919 128990 72 Locate
trnR-ACG gene − 129562 129635 74 Locate
rrn5 gene − 129876 129996 121 Locate
rrn4.5 gene − 130221 130323 103 Locate
rrn23 gene − 130424 133232 2809 Locate
trnA-UGC gene − 133412 134298 887 Locate
trnI-GAU gene − 134363 135370 1008 Locate
rrn16 gene − 135659 137149 1491 Locate
trnV-GAC gene − 137377 137448 72 Locate
rps12 gene + 138904 139697 794 Locate
rps7 gene + 139751 140218 468 Locate
ndhB gene + 140493 142712 2220 Locate
trnL-CAA gene + 143257 143337 81 Locate
ycf15 gene − 143604 143852 249 Locate
ycf2 gene − 143943 150743 6801 Locate
trnI-CAU gene + 150832 150905 74 Locate
rpl23 gene + 151071 151352 282 Locate
rpl2 gene + 151371 152860 1490 Locate
Status Available
Accession NC_058333.1
Length 152,957 bp
GC content 38.2%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources