Dicrastylis parvifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_058335.1 · 3–77 bp · −
psbA · NC_058335.1 · 386–1,444 bp · −
matK · NC_058335.1 · 1,961–3,496 bp · −
rps16 · NC_058335.1 · 5,156–6,286 bp · −
trnQ-UUG · NC_058335.1 · 7,347–7,418 bp · −
trnS-GCU · NC_058335.1 · 8,574–8,661 bp · −
atpA · NC_058335.1 · 10,507–12,030 bp · −
atpF · NC_058335.1 · 12,112–13,361 bp · −
atpH · NC_058335.1 · 13,730–13,975 bp · −
atpI · NC_058335.1 · 14,937–15,686 bp · −
rps2 · NC_058335.1 · 15,923–16,633 bp · −
rpoC · NC_058335.1 · 16,850–21,031 bp · −
rpoC1 · NC_058335.1 · 21,187–24,001 bp · −
rpoB · NC_058335.1 · 24,028–27,216 bp · −
psbM · NC_058335.1 · 30,397–30,501 bp · −
trnD-GUC · NC_058335.1 · 31,032–31,105 bp · −
trnY-GUA · NC_058335.1 · 31,217–31,300 bp · −
trnE-UUC · NC_058335.1 · 31,360–31,432 bp · −
trnS-UGA · NC_058335.1 · 36,095–36,187 bp · −
trnfM-CAU · NC_058335.1 · 37,220–37,293 bp · −
rps14 · NC_058335.1 · 37,443–37,745 bp · −
psaB · NC_058335.1 · 37,871–40,075 bp · −
psaA · NC_058335.1 · 40,101–42,353 bp · −
ycf3 · NC_058335.1 · 43,129–45,080 bp · −
rps4 · NC_058335.1 · 46,298–46,903 bp · −
trnT-UGU · NC_058335.1 · 47,321–47,393 bp · −
ndhJ · NC_058335.1 · 49,729–50,205 bp · −
ndhK · NC_058335.1 · 50,306–50,983 bp · −
ndhC · NC_058335.1 · 51,035–51,397 bp · −
trnV-UAC · NC_058335.1 · 52,455–53,107 bp · −
atpE · NC_058335.1 · 53,576–53,977 bp · −
atpB · NC_058335.1 · 53,974–55,470 bp · −
psbJ · NC_058335.1 · 65,243–65,365 bp · −
psbL · NC_058335.1 · 65,501–65,617 bp · −
psbF · NC_058335.1 · 65,641–65,760 bp · −
psbE · NC_058335.1 · 65,775–66,026 bp · −
trnW-CCA · NC_058335.1 · 67,474–67,555 bp · −
trnP-UGG · NC_058335.1 · 67,719–67,792 bp · −
rpl20 · NC_058335.1 · 69,702–70,088 bp · −
rps12 · NC_058335.1 · 70,916–71,029 bp · −
rps12 · NC_058335.1 · 97,965–98,758 bp · −
clpP · NC_058335.1 · 71,157–73,094 bp · −
psbN · NC_058335.1 · 75,455–75,586 bp · −
rpoA · NC_058335.1 · 78,972–79,985 bp · −
rps11 · NC_058335.1 · 80,053–80,469 bp · −
rpl36 · NC_058335.1 · 80,571–80,684 bp · −
infA · NC_058335.1 · 80,789–81,022 bp · −
rps8 · NC_058335.1 · 81,146–81,550 bp · −
rpl14 · NC_058335.1 · 81,732–82,100 bp · −
rpl16 · NC_058335.1 · 82,227–83,520 bp · −
rps3 · NC_058335.1 · 83,663–84,319 bp · −
rpl22 · NC_058335.1 · 84,329–84,769 bp · −
rps19 · NC_058335.1 · 84,833–85,111 bp · −
rpl2 · NC_058335.1 · 85,168–86,659 bp · −
rpl23 · NC_058335.1 · 86,678–86,959 bp · −
trnI-CAU · NC_058335.1 · 87,138–87,211 bp · −
trnL-CAA · NC_058335.1 · 94,330–94,410 bp · −
ndhB · NC_058335.1 · 96,393–97,169 bp · −
ndhB · NC_058335.1 · 94,958–95,713 bp · −
ndhB · NC_058335.1 · 94,958–97,170 bp · −
rps7 · NC_058335.1 · 97,444–97,911 bp · −
trnN-GUU · NC_058335.1 · 108,885–108,956 bp · −
ndhF · NC_058335.1 · 110,413–112,656 bp · −
ndhD · NC_058335.1 · 115,269–116,798 bp · −
psaC · NC_058335.1 · 116,896–117,141 bp · −
ndhE · NC_058335.1 · 117,392–117,697 bp · −
ndhG · NC_058335.1 · 117,912–118,442 bp · −
ndhI · NC_058335.1 · 118,795–119,301 bp · −
ndhA · NC_058335.1 · 119,381–121,454 bp · −
ndhH · NC_058335.1 · 121,456–122,637 bp · −
rps15 · NC_058335.1 · 122,734–123,006 bp · −
ycf1 · NC_058335.1 · 123,426–129,017 bp · −
trnR-ACG · NC_058335.1 · 129,870–129,943 bp · −
rrn5 · NC_058335.1 · 130,187–130,307 bp · −
rrn4.5 · NC_058335.1 · 130,563–130,665 bp · −
rrn23 · NC_058335.1 · 130,764–133,574 bp · −
trnA-UGC · NC_058335.1 · 133,744–134,622 bp · −
trnI-GAU · NC_058335.1 · 134,687–135,706 bp · −
rrn16 · NC_058335.1 · 136,005–137,495 bp · −
trnV-GAC · NC_058335.1 · 137,723–137,794 bp · −
ycf15 · NC_058335.1 · 144,123–144,272 bp · −
ycf15 · NC_058335.1 · 144,123–144,375 bp · −
ycf2 · NC_058335.1 · 144,466–150,876 bp · −
psbK · NC_058335.1 · 7,740–7,949 bp · +
psbI · NC_058335.1 · 8,341–8,451 bp · +
trnG-UCC · NC_058335.1 · 9,398–10,153 bp · +
trnR-UCU · NC_058335.1 · 10,339–10,410 bp · +
trnC-GCA · NC_058335.1 · 28,431–28,501 bp · +
petN · NC_058335.1 · 29,327–29,416 bp · +
trnT-GGU · NC_058335.1 · 31,988–32,059 bp · +
psbD · NC_058335.1 · 33,422–34,483 bp · +
psbC · NC_058335.1 · 34,431–35,852 bp · +
psbZ · NC_058335.1 · 36,509–36,697 bp · +
trnG-GCC · NC_058335.1 · 36,989–37,059 bp · +
trnS-GGA · NC_058335.1 · 45,913–45,999 bp · +
trnL-UAA · NC_058335.1 · 48,101–48,675 bp · +
trnF-GAA · NC_058335.1 · 49,012–49,084 bp · +
trnM-CAU · NC_058335.1 · 53,287–53,359 bp · +
rbcL · NC_058335.1 · 56,249–57,703 bp · +
accD · NC_058335.1 · 58,365–59,867 bp · +
psaI · NC_058335.1 · 60,571–60,681 bp · +
ycf4 · NC_058335.1 · 61,125–61,679 bp · +
cemA · NC_058335.1 · 62,326–63,015 bp · +
petA · NC_058335.1 · 63,225–64,187 bp · +
petL · NC_058335.1 · 66,970–67,065 bp · +
petG · NC_058335.1 · 67,241–67,354 bp · +
psaJ · NC_058335.1 · 68,203–68,337 bp · +
rpl33 · NC_058335.1 · 68,838–69,038 bp · +
rps18 · NC_058335.1 · 69,207–69,512 bp · +
rps12 · NC_058335.1 · 139,434–140,227 bp · +
psbB · NC_058335.1 · 73,567–75,093 bp · +
psbT · NC_058335.1 · 75,287–75,394 bp · +
psbH · NC_058335.1 · 75,674–75,913 bp · +
petB · NC_058335.1 · 76,038–77,388 bp · +
petD · NC_058335.1 · 77,577–78,795 bp · +
ycf2 · NC_058335.1 · 87,316–93,726 bp · +
ycf15 · NC_058335.1 · 93,817–94,069 bp · +
ycf15 · NC_058335.1 · 93,920–94,069 bp · +
trnV-GAC · NC_058335.1 · 100,398–100,469 bp · +
rrn16 · NC_058335.1 · 100,697–102,187 bp · +
trnI-GAU · NC_058335.1 · 102,486–103,505 bp · +
trnA-UGC · NC_058335.1 · 103,570–104,448 bp · +
rrn23 · NC_058335.1 · 104,618–107,428 bp · +
rrn4.5 · NC_058335.1 · 107,527–107,629 bp · +
rrn5 · NC_058335.1 · 107,885–108,005 bp · +
trnR-ACG · NC_058335.1 · 108,249–108,322 bp · +
ycf1 · NC_058335.1 · 109,175–110,416 bp · +
rpl32 · NC_058335.1 · 113,161–113,325 bp · +
trnL-UAG; trnL-CAA · NC_058335.1 · 113,869–113,948 bp · +
ccsA · NC_058335.1 · 114,038–115,009 bp · +
trnN-GUU · NC_058335.1 · 129,236–129,307 bp · +
rps7 · NC_058335.1 · 140,281–140,748 bp · +
ndhB · NC_058335.1 · 141,023–143,234 bp · +
trnL-CAA · NC_058335.1 · 143,782–143,862 bp · +
trnI-CAU · NC_058335.1 · 150,981–151,054 bp · +
rpl23 · NC_058335.1 · 151,233–151,514 bp · +
rpl2 · NC_058335.1 · 151,533–153,024 bp · +
rps19 · NC_058335.1 · 153,087–153,116 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Dicrastylis parvifolia
ANNOTATED PLASTOME
NC_058335.1
153,121 bp · 136 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38280 76560 114841 153121 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG; trnL-CAA ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB ndhB ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
138 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 77 75 Locate
psbA gene − 386 1444 1059 Locate
matK gene − 1961 3496 1536 Locate
rps16 gene − 5156 6286 1131 Locate
trnQ-UUG gene − 7347 7418 72 Locate
psbK gene + 7740 7949 210 Locate
psbI gene + 8341 8451 111 Locate
trnS-GCU gene − 8574 8661 88 Locate
trnG-UCC gene + 9398 10153 756 Locate
trnR-UCU gene + 10339 10410 72 Locate
atpA gene − 10507 12030 1524 Locate
atpF gene − 12112 13361 1250 Locate
atpH gene − 13730 13975 246 Locate
atpI gene − 14937 15686 750 Locate
rps2 gene − 15923 16633 711 Locate
rpoC gene − 16850 21031 4182 Locate
rpoC1 gene − 21187 24001 2815 Locate
rpoB gene − 24028 27216 3189 Locate
trnC-GCA gene + 28431 28501 71 Locate
petN gene + 29327 29416 90 Locate
psbM gene − 30397 30501 105 Locate
trnD-GUC gene − 31032 31105 74 Locate
trnY-GUA gene − 31217 31300 84 Locate
trnE-UUC gene − 31360 31432 73 Locate
trnT-GGU gene + 31988 32059 72 Locate
psbD gene + 33422 34483 1062 Locate
psbC gene + 34431 35852 1422 Locate
trnS-UGA gene − 36095 36187 93 Locate
psbZ gene + 36509 36697 189 Locate
trnG-GCC gene + 36989 37059 71 Locate
trnfM-CAU gene − 37220 37293 74 Locate
rps14 gene − 37443 37745 303 Locate
psaB gene − 37871 40075 2205 Locate
psaA gene − 40101 42353 2253 Locate
ycf3 gene − 43129 45080 1952 Locate
trnS-GGA gene + 45913 45999 87 Locate
rps4 gene − 46298 46903 606 Locate
trnT-UGU gene − 47321 47393 73 Locate
trnL-UAA gene + 48101 48675 575 Locate
trnF-GAA gene + 49012 49084 73 Locate
ndhJ gene − 49729 50205 477 Locate
ndhK gene − 50306 50983 678 Locate
ndhC gene − 51035 51397 363 Locate
trnV-UAC gene − 52455 53107 653 Locate
trnM-CAU gene + 53287 53359 73 Locate
atpE gene − 53576 53977 402 Locate
atpB gene − 53974 55470 1497 Locate
rbcL gene + 56249 57703 1455 Locate
accD gene + 58365 59867 1503 Locate
psaI gene + 60571 60681 111 Locate
ycf4 gene + 61125 61679 555 Locate
cemA gene + 62326 63015 690 Locate
petA gene + 63225 64187 963 Locate
psbJ gene − 65243 65365 123 Locate
psbL gene − 65501 65617 117 Locate
psbF gene − 65641 65760 120 Locate
psbE gene − 65775 66026 252 Locate
petL gene + 66970 67065 96 Locate
petG gene + 67241 67354 114 Locate
trnW-CCA gene − 67474 67555 82 Locate
trnP-UGG gene − 67719 67792 74 Locate
psaJ gene + 68203 68337 135 Locate
rpl33 gene + 68838 69038 201 Locate
rps18 gene + 69207 69512 306 Locate
rpl20 gene − 69702 70088 387 Locate
rps12 gene − 70916 71029 114 Locate
clpP gene − 71157 73094 1938 Locate
psbB gene + 73567 75093 1527 Locate
psbT gene + 75287 75394 108 Locate
psbN gene − 75455 75586 132 Locate
psbH gene + 75674 75913 240 Locate
petB gene + 76038 77388 1351 Locate
petD gene + 77577 78795 1219 Locate
rpoA gene − 78972 79985 1014 Locate
rps11 gene − 80053 80469 417 Locate
rpl36 gene − 80571 80684 114 Locate
infA gene − 80789 81022 234 Locate
rps8 gene − 81146 81550 405 Locate
rpl14 gene − 81732 82100 369 Locate
rpl16 gene − 82227 83520 1294 Locate
rps3 gene − 83663 84319 657 Locate
rpl22 gene − 84329 84769 441 Locate
rps19 gene − 84833 85111 279 Locate
rpl2 gene − 85168 86659 1492 Locate
rpl23 gene − 86678 86959 282 Locate
trnI-CAU gene − 87138 87211 74 Locate
ycf2 gene + 87316 93726 6411 Locate
ycf15 gene + 93817 94069 253 Locate
ycf15 CDS + 93920 94069 150 Locate
trnL-CAA gene − 94330 94410 81 Locate
ndhB CDS − 94958 95713 756 Locate
ndhB gene − 94958 97170 2213 Locate
ndhB CDS − 96393 97169 777 Locate
rps7 gene − 97444 97911 468 Locate
rps12 gene − 97965 98758 794 Locate
trnV-GAC gene + 100398 100469 72 Locate
rrn16 gene + 100697 102187 1491 Locate
trnI-GAU gene + 102486 103505 1020 Locate
trnA-UGC gene + 103570 104448 879 Locate
rrn23 gene + 104618 107428 2811 Locate
rrn4.5 gene + 107527 107629 103 Locate
rrn5 gene + 107885 108005 121 Locate
trnR-ACG gene + 108249 108322 74 Locate
trnN-GUU gene − 108885 108956 72 Locate
ycf1 gene + 109175 110416 1242 Locate
ndhF gene − 110413 112656 2244 Locate
rpl32 gene + 113161 113325 165 Locate
trnL-UAG; trnL-CAA gene + 113869 113948 80 Locate
ccsA gene + 114038 115009 972 Locate
ndhD gene − 115269 116798 1530 Locate
psaC gene − 116896 117141 246 Locate
ndhE gene − 117392 117697 306 Locate
ndhG gene − 117912 118442 531 Locate
ndhI gene − 118795 119301 507 Locate
ndhA gene − 119381 121454 2074 Locate
ndhH gene − 121456 122637 1182 Locate
rps15 gene − 122734 123006 273 Locate
ycf1 gene − 123426 129017 5592 Locate
trnN-GUU gene + 129236 129307 72 Locate
trnR-ACG gene − 129870 129943 74 Locate
rrn5 gene − 130187 130307 121 Locate
rrn4.5 gene − 130563 130665 103 Locate
rrn23 gene − 130764 133574 2811 Locate
trnA-UGC gene − 133744 134622 879 Locate
trnI-GAU gene − 134687 135706 1020 Locate
rrn16 gene − 136005 137495 1491 Locate
trnV-GAC gene − 137723 137794 72 Locate
rps12 gene + 139434 140227 794 Locate
rps7 gene + 140281 140748 468 Locate
ndhB gene + 141023 143234 2212 Locate
trnL-CAA gene + 143782 143862 81 Locate
ycf15 CDS − 144123 144272 150 Locate
ycf15 gene − 144123 144375 253 Locate
ycf2 gene − 144466 150876 6411 Locate
trnI-CAU gene + 150981 151054 74 Locate
rpl23 gene + 151233 151514 282 Locate
rpl2 gene + 151533 153024 1492 Locate
rps19 gene + 153087 153116 30 Locate
Status Available
Accession NC_058335.1
Length 153,121 bp
GC content 38.0%
Annotated genes 136
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 17 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 14 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources