Elsholtzia capituligera chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP357162.1 · 12–85 bp · −
psbA · PP357162.1 · 415–1,473 bp · −
trnK-UUU · PP357162.1 · 1,701–4,256 bp · −
matK · PP357162.1 · 2,010–3,533 bp · −
rps16 · PP357162.1 · 4,785–5,913 bp · −
trnQ-UUG · PP357162.1 · 6,816–6,887 bp · −
trnS-GCU · PP357162.1 · 8,104–8,191 bp · −
atpA · PP357162.1 · 10,025–11,548 bp · −
atpF · PP357162.1 · 11,650–12,900 bp · −
atpH · PP357162.1 · 13,173–13,418 bp · −
atpI · PP357162.1 · 14,446–15,189 bp · −
rps2 · PP357162.1 · 15,423–16,133 bp · −
rpoC2 · PP357162.1 · 16,365–20,546 bp · −
rpoC1 · PP357162.1 · 20,711–23,524 bp · −
rpoB · PP357162.1 · 23,551–26,763 bp · −
psbM · PP357162.1 · 29,265–29,369 bp · −
trnD-GUC · PP357162.1 · 29,735–29,808 bp · −
trnY-GUA · PP357162.1 · 29,919–30,002 bp · −
trnE-UUC · PP357162.1 · 30,076–30,148 bp · −
trnS-UGA · PP357162.1 · 34,596–34,677 bp · −
trnfM-CAU · PP357162.1 · 35,714–35,787 bp · −
rps14 · PP357162.1 · 35,932–36,234 bp · −
psaB · PP357162.1 · 36,357–38,561 bp · −
psaA · PP357162.1 · 38,587–40,839 bp · −
ycf3 · PP357162.1 · 41,514–43,481 bp · −
rps4 · PP357162.1 · 44,720–45,325 bp · −
trnT-UGU · PP357162.1 · 45,727–45,799 bp · −
ndhJ · PP357162.1 · 48,140–48,616 bp · −
ndhK · PP357162.1 · 48,728–49,405 bp · −
ndhC · PP357162.1 · 49,457–49,819 bp · −
trnV-UAC · PP357162.1 · 50,780–51,429 bp · −
atpE · PP357162.1 · 51,898–52,299 bp · −
atpB · PP357162.1 · 52,296–53,792 bp · −
psbJ · PP357162.1 · 63,504–63,626 bp · −
psbL · PP357162.1 · 63,761–63,877 bp · −
psbF · PP357162.1 · 63,901–64,020 bp · −
psbE · PP357162.1 · 64,035–64,286 bp · −
trnW-CCA · PP357162.1 · 65,699–65,772 bp · −
trnP-UGG · PP357162.1 · 65,941–66,014 bp · −
rpl20 · PP357162.1 · 67,788–68,174 bp · −
rps12 · PP357162.1 · 68,984–69,109 bp · −
rps12 · PP357162.1 · 96,405–97,195 bp · −
clpP · PP357162.1 · 69,225–71,169 bp · −
psbN · PP357162.1 · 73,505–73,636 bp · −
rpoA · PP357162.1 · 77,031–78,038 bp · −
rps11 · PP357162.1 · 78,110–78,526 bp · −
rpl36 · PP357162.1 · 78,636–78,749 bp · −
infA · PP357162.1 · 78,853–79,086 bp · −
rps8 · PP357162.1 · 79,214–79,618 bp · −
rpl14 · PP357162.1 · 79,791–80,159 bp · −
rpl16 · PP357162.1 · 80,292–81,563 bp · −
rps3 · PP357162.1 · 81,656–82,318 bp · −
rpl22 · PP357162.1 · 82,303–82,770 bp · −
rps19 · PP357162.1 · 82,854–83,132 bp · −
rpl2 · PP357162.1 · 83,194–84,682 bp · −
rpl23 · PP357162.1 · 84,701–84,982 bp · −
trnI-CAU · PP357162.1 · 85,148–85,221 bp · −
trnL-CAA · PP357162.1 · 92,754–92,834 bp · −
ndhB · PP357162.1 · 93,412–95,565 bp · −
rps7 · PP357162.1 · 95,884–96,351 bp · −
trnN-GUU · PP357162.1 · 107,293–107,364 bp · −
ndhF · PP357162.1 · 108,717–110,948 bp · −
ndhD · PP357162.1 · 113,584–115,113 bp · −
psaC · PP357162.1 · 115,210–115,455 bp · −
ndhE · PP357162.1 · 115,708–116,013 bp · −
ndhG · PP357162.1 · 116,240–116,770 bp · −
ndhI · PP357162.1 · 117,114–117,620 bp · −
ndhA · PP357162.1 · 117,702–119,816 bp · −
ndhH · PP357162.1 · 119,818–121,053 bp · −
rps15 · PP357162.1 · 121,099–121,371 bp · −
ycf1 · PP357162.1 · 121,803–127,451 bp · −
trnR-ACG · PP357162.1 · 128,301–128,374 bp · −
rrn5 · PP357162.1 · 128,618–128,738 bp · −
rrn4.5 · PP357162.1 · 128,999–129,101 bp · −
rrn23 · PP357162.1 · 129,201–132,018 bp · −
trnA-UGC · PP357162.1 · 132,178–133,061 bp · −
trnI-GAU · PP357162.1 · 133,126–134,145 bp · −
rrn16 · PP357162.1 · 134,454–135,944 bp · −
trnV-GAC · PP357162.1 · 136,171–136,242 bp · −
ycf2 · PP357162.1 · 142,866–149,723 bp · −
psbK · PP357162.1 · 7,266–7,460 bp · +
psbI · PP357162.1 · 7,847–7,957 bp · +
trnG-UCC · PP357162.1 · 8,894–9,647 bp · +
trnR-UCU · PP357162.1 · 9,849–9,920 bp · +
trnC-GCA · PP357162.1 · 27,932–28,002 bp · +
petN · PP357162.1 · 28,159–28,254 bp · +
trnT-GGU · PP357162.1 · 30,682–30,753 bp · +
psbD · PP357162.1 · 31,900–32,961 bp · +
psbC · PP357162.1 · 32,909–34,330 bp · +
psbZ · PP357162.1 · 35,020–35,208 bp · +
trnG-GCC · PP357162.1 · 35,475–35,545 bp · +
trnS-GGA · PP357162.1 · 44,330–44,416 bp · +
trnL-UAA · PP357162.1 · 46,525–47,093 bp · +
trnF-GAA · PP357162.1 · 47,388–47,460 bp · +
trnM-CAU · PP357162.1 · 51,610–51,682 bp · +
rbcL · PP357162.1 · 54,591–56,051 bp · +
accD · PP357162.1 · 56,724–58,205 bp · +
psaI · PP357162.1 · 58,913–59,023 bp · +
ycf4 · PP357162.1 · 59,496–60,050 bp · +
cemA · PP357162.1 · 60,709–61,398 bp · +
petA · PP357162.1 · 61,633–62,595 bp · +
petL · PP357162.1 · 65,187–65,282 bp · +
petG · PP357162.1 · 65,458–65,571 bp · +
psaJ · PP357162.1 · 66,297–66,431 bp · +
rpl33 · PP357162.1 · 66,871–67,071 bp · +
rps18 · PP357162.1 · 67,242–67,547 bp · +
rps12 · PP357162.1 · 137,838–138,628 bp · +
psbB · PP357162.1 · 71,627–73,153 bp · +
psbT · PP357162.1 · 73,338–73,439 bp · +
psbH · PP357162.1 · 73,742–73,963 bp · +
petB · PP357162.1 · 74,091–75,465 bp · +
petD · PP357162.1 · 75,654–76,848 bp · +
ycf2 · PP357162.1 · 85,310–92,167 bp · +
trnV-GAC · PP357162.1 · 98,791–98,862 bp · +
rrn16 · PP357162.1 · 99,089–100,579 bp · +
trnI-GAU · PP357162.1 · 100,888–101,907 bp · +
trnA-UGC · PP357162.1 · 101,972–102,855 bp · +
rrn23 · PP357162.1 · 103,015–105,832 bp · +
rrn4.5 · PP357162.1 · 105,932–106,034 bp · +
rrn5 · PP357162.1 · 106,295–106,415 bp · +
trnR-ACG · PP357162.1 · 106,659–106,732 bp · +
rpl32 · PP357162.1 · 111,342–111,512 bp · +
trnL-UAG · PP357162.1 · 112,201–112,280 bp · +
ccsA · PP357162.1 · 112,368–113,339 bp · +
trnN-GUU · PP357162.1 · 127,669–127,740 bp · +
rps7 · PP357162.1 · 138,682–139,149 bp · +
ndhB · PP357162.1 · 139,468–141,621 bp · +
trnL-CAA · PP357162.1 · 142,199–142,279 bp · +
trnI-CAU · PP357162.1 · 149,812–149,885 bp · +
rpl23 · PP357162.1 · 150,051–150,332 bp · +
rpl2 · PP357162.1 · 150,351–151,839 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Elsholtzia capituligera
ANNOTATED PLASTOME
PP357162.1
151,943 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37986 75972 113957 151943 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 85 74 Locate
psbA gene − 415 1473 1059 Locate
trnK-UUU gene − 1701 4256 2556 Locate
matK gene − 2010 3533 1524 Locate
rps16 gene − 4785 5913 1129 Locate
trnQ-UUG gene − 6816 6887 72 Locate
psbK gene + 7266 7460 195 Locate
psbI gene + 7847 7957 111 Locate
trnS-GCU gene − 8104 8191 88 Locate
trnG-UCC gene + 8894 9647 754 Locate
trnR-UCU gene + 9849 9920 72 Locate
atpA gene − 10025 11548 1524 Locate
atpF gene − 11650 12900 1251 Locate
atpH gene − 13173 13418 246 Locate
atpI gene − 14446 15189 744 Locate
rps2 gene − 15423 16133 711 Locate
rpoC2 gene − 16365 20546 4182 Locate
rpoC1 gene − 20711 23524 2814 Locate
rpoB gene − 23551 26763 3213 Locate
trnC-GCA gene + 27932 28002 71 Locate
petN gene + 28159 28254 96 Locate
psbM gene − 29265 29369 105 Locate
trnD-GUC gene − 29735 29808 74 Locate
trnY-GUA gene − 29919 30002 84 Locate
trnE-UUC gene − 30076 30148 73 Locate
trnT-GGU gene + 30682 30753 72 Locate
psbD gene + 31900 32961 1062 Locate
psbC gene + 32909 34330 1422 Locate
trnS-UGA gene − 34596 34677 82 Locate
psbZ gene + 35020 35208 189 Locate
trnG-GCC gene + 35475 35545 71 Locate
trnfM-CAU gene − 35714 35787 74 Locate
rps14 gene − 35932 36234 303 Locate
psaB gene − 36357 38561 2205 Locate
psaA gene − 38587 40839 2253 Locate
ycf3 gene − 41514 43481 1968 Locate
trnS-GGA gene + 44330 44416 87 Locate
rps4 gene − 44720 45325 606 Locate
trnT-UGU gene − 45727 45799 73 Locate
trnL-UAA gene + 46525 47093 569 Locate
trnF-GAA gene + 47388 47460 73 Locate
ndhJ gene − 48140 48616 477 Locate
ndhK gene − 48728 49405 678 Locate
ndhC gene − 49457 49819 363 Locate
trnV-UAC gene − 50780 51429 650 Locate
trnM-CAU gene + 51610 51682 73 Locate
atpE gene − 51898 52299 402 Locate
atpB gene − 52296 53792 1497 Locate
rbcL gene + 54591 56051 1461 Locate
accD gene + 56724 58205 1482 Locate
psaI gene + 58913 59023 111 Locate
ycf4 gene + 59496 60050 555 Locate
cemA gene + 60709 61398 690 Locate
petA gene + 61633 62595 963 Locate
psbJ gene − 63504 63626 123 Locate
psbL gene − 63761 63877 117 Locate
psbF gene − 63901 64020 120 Locate
psbE gene − 64035 64286 252 Locate
petL gene + 65187 65282 96 Locate
petG gene + 65458 65571 114 Locate
trnW-CCA gene − 65699 65772 74 Locate
trnP-UGG gene − 65941 66014 74 Locate
psaJ gene + 66297 66431 135 Locate
rpl33 gene + 66871 67071 201 Locate
rps18 gene + 67242 67547 306 Locate
rpl20 gene − 67788 68174 387 Locate
rps12 gene − 68984 69109 126 Locate
clpP gene − 69225 71169 1945 Locate
psbB gene + 71627 73153 1527 Locate
psbT gene + 73338 73439 102 Locate
psbN gene − 73505 73636 132 Locate
psbH gene + 73742 73963 222 Locate
petB gene + 74091 75465 1375 Locate
petD gene + 75654 76848 1195 Locate
rpoA gene − 77031 78038 1008 Locate
rps11 gene − 78110 78526 417 Locate
rpl36 gene − 78636 78749 114 Locate
infA gene − 78853 79086 234 Locate
rps8 gene − 79214 79618 405 Locate
rpl14 gene − 79791 80159 369 Locate
rpl16 gene − 80292 81563 1272 Locate
rps3 gene − 81656 82318 663 Locate
rpl22 gene − 82303 82770 468 Locate
rps19 gene − 82854 83132 279 Locate
rpl2 gene − 83194 84682 1489 Locate
rpl23 gene − 84701 84982 282 Locate
trnI-CAU gene − 85148 85221 74 Locate
ycf2 gene + 85310 92167 6858 Locate
trnL-CAA gene − 92754 92834 81 Locate
ndhB gene − 93412 95565 2154 Locate
rps7 gene − 95884 96351 468 Locate
rps12 gene − 96405 97195 791 Locate
trnV-GAC gene + 98791 98862 72 Locate
rrn16 gene + 99089 100579 1491 Locate
trnI-GAU gene + 100888 101907 1020 Locate
trnA-UGC gene + 101972 102855 884 Locate
rrn23 gene + 103015 105832 2818 Locate
rrn4.5 gene + 105932 106034 103 Locate
rrn5 gene + 106295 106415 121 Locate
trnR-ACG gene + 106659 106732 74 Locate
trnN-GUU gene − 107293 107364 72 Locate
ndhF gene − 108717 110948 2232 Locate
rpl32 gene + 111342 111512 171 Locate
trnL-UAG gene + 112201 112280 80 Locate
ccsA gene + 112368 113339 972 Locate
ndhD gene − 113584 115113 1530 Locate
psaC gene − 115210 115455 246 Locate
ndhE gene − 115708 116013 306 Locate
ndhG gene − 116240 116770 531 Locate
ndhI gene − 117114 117620 507 Locate
ndhA gene − 117702 119816 2115 Locate
ndhH gene − 119818 121053 1236 Locate
rps15 gene − 121099 121371 273 Locate
ycf1 gene − 121803 127451 5649 Locate
trnN-GUU gene + 127669 127740 72 Locate
trnR-ACG gene − 128301 128374 74 Locate
rrn5 gene − 128618 128738 121 Locate
rrn4.5 gene − 128999 129101 103 Locate
rrn23 gene − 129201 132018 2818 Locate
trnA-UGC gene − 132178 133061 884 Locate
trnI-GAU gene − 133126 134145 1020 Locate
rrn16 gene − 134454 135944 1491 Locate
trnV-GAC gene − 136171 136242 72 Locate
rps12 gene + 137838 138628 791 Locate
rps7 gene + 138682 139149 468 Locate
ndhB gene + 139468 141621 2154 Locate
trnL-CAA gene + 142199 142279 81 Locate
ycf2 gene − 142866 149723 6858 Locate
trnI-CAU gene + 149812 149885 74 Locate
rpl23 gene + 150051 150332 282 Locate
rpl2 gene + 150351 151839 1489 Locate
Status Available
Accession PP357162.1
Length 151,943 bp
GC content 37.8%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources