Elsholtzia ciliata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_067947.1 · 6–79 bp · −
psbA · NC_067947.1 · 403–1,461 bp · −
trnK-UUU · NC_067947.1 · 1,689–4,259 bp · −
matK · NC_067947.1 · 1,998–3,539 bp · −
rps16 · NC_067947.1 · 4,777–5,916 bp · −
trnQ-UUG · NC_067947.1 · 6,616–6,687 bp · −
trnS-GCU · NC_067947.1 · 7,882–7,969 bp · −
atpA · NC_067947.1 · 9,779–11,302 bp · −
atpF · NC_067947.1 · 11,407–12,665 bp · −
atpH · NC_067947.1 · 12,938–13,183 bp · −
atpI · NC_067947.1 · 13,801–14,544 bp · −
rps2 · NC_067947.1 · 14,784–15,494 bp · −
rpoC2 · NC_067947.1 · 15,779–19,897 bp · −
rpoC1 · NC_067947.1 · 20,074–22,885 bp · −
rpoB · NC_067947.1 · 22,912–26,124 bp · −
psbM · NC_067947.1 · 28,643–28,747 bp · −
trnD-GUC · NC_067947.1 · 29,106–29,179 bp · −
trnY-GUA · NC_067947.1 · 29,290–29,373 bp · −
trnE-UUC · NC_067947.1 · 29,448–29,520 bp · −
trnS-UGA · NC_067947.1 · 33,922–34,004 bp · −
trnfM-CAU · NC_067947.1 · 35,088–35,161 bp · −
rps14 · NC_067947.1 · 35,306–35,608 bp · −
psaB · NC_067947.1 · 35,731–37,935 bp · −
psaA · NC_067947.1 · 37,961–40,213 bp · −
ycf3 · NC_067947.1 · 40,863–42,828 bp · −
rps4 · NC_067947.1 · 44,082–44,687 bp · −
trnT-UGU · NC_067947.1 · 45,071–45,143 bp · −
ndhJ · NC_067947.1 · 47,443–47,919 bp · −
ndhK · NC_067947.1 · 48,031–48,708 bp · −
ndhC · NC_067947.1 · 48,761–49,123 bp · −
trnV-UAC · NC_067947.1 · 50,067–50,715 bp · −
atpE · NC_067947.1 · 51,186–51,587 bp · −
atpB · NC_067947.1 · 51,584–53,080 bp · −
psbJ · NC_067947.1 · 62,868–62,990 bp · −
psbL · NC_067947.1 · 63,125–63,241 bp · −
psbF · NC_067947.1 · 63,265–63,384 bp · −
psbE · NC_067947.1 · 63,399–63,650 bp · −
trnW-CCA · NC_067947.1 · 65,080–65,153 bp · −
trnP-UGG · NC_067947.1 · 65,289–65,362 bp · −
rpl20 · NC_067947.1 · 67,155–67,541 bp · −
rps12 · NC_067947.1 · 68,365–68,478 bp · −
rps12 · NC_067947.1 · 95,821–96,611 bp · −
clpP · NC_067947.1 · 68,594–70,550 bp · −
psbN · NC_067947.1 · 72,893–73,024 bp · −
rpoA · NC_067947.1 · 76,417–77,424 bp · −
rps11 · NC_067947.1 · 77,496–77,912 bp · −
rpl36 · NC_067947.1 · 78,023–78,136 bp · −
infA · NC_067947.1 · 78,240–78,473 bp · −
rps8 · NC_067947.1 · 78,599–79,003 bp · −
rpl14 · NC_067947.1 · 79,165–79,533 bp · −
rpl16 · NC_067947.1 · 79,666–80,942 bp · −
rps3 · NC_067947.1 · 81,085–81,747 bp · −
rpl22 · NC_067947.1 · 81,732–82,199 bp · −
rps19 · NC_067947.1 · 82,266–82,544 bp · −
rpl2 · NC_067947.1 · 82,604–84,093 bp · −
rpl23 · NC_067947.1 · 84,112–84,393 bp · −
trnI-CAU · NC_067947.1 · 84,559–84,632 bp · −
trnL-CAA · NC_067947.1 · 92,171–92,251 bp · −
ndhB · NC_067947.1 · 92,828–94,981 bp · −
rps7 · NC_067947.1 · 95,300–95,767 bp · −
trnN-GUU · NC_067947.1 · 106,673–106,744 bp · −
ndhF · NC_067947.1 · 108,097–110,328 bp · −
ndhD · NC_067947.1 · 112,949–114,451 bp · −
psaC · NC_067947.1 · 114,571–114,816 bp · −
ndhE · NC_067947.1 · 115,067–115,372 bp · −
ndhG · NC_067947.1 · 115,595–116,125 bp · −
ndhI · NC_067947.1 · 116,451–116,957 bp · −
ndhA · NC_067947.1 · 117,038–119,146 bp · −
ndhH · NC_067947.1 · 119,148–120,329 bp · −
rps15 · NC_067947.1 · 120,429–120,701 bp · −
ycf1 · NC_067947.1 · 121,121–126,553 bp · −
trnR-ACG · NC_067947.1 · 127,507–127,580 bp · −
rrn5 · NC_067947.1 · 127,814–127,944 bp · −
rrn4.5 · NC_067947.1 · 128,200–128,302 bp · −
rrn23 · NC_067947.1 · 128,402–131,218 bp · −
trnA-UGC · NC_067947.1 · 131,371–132,254 bp · −
trnI-GAU · NC_067947.1 · 132,317–133,336 bp · −
rrn16 · NC_067947.1 · 133,635–135,125 bp · −
trnV-GAC · NC_067947.1 · 135,352–135,423 bp · −
ycf15 · NC_067947.1 · 141,714–141,962 bp · −
ycf2 · NC_067947.1 · 142,053–148,901 bp · −
psbK · NC_067947.1 · 7,055–7,240 bp · +
psbI · NC_067947.1 · 7,630–7,740 bp · +
trnG-UCC · NC_067947.1 · 8,668–9,417 bp · +
trnR-UCU · NC_067947.1 · 9,603–9,674 bp · +
trnC-GCA · NC_067947.1 · 27,285–27,355 bp · +
petN · NC_067947.1 · 27,505–27,600 bp · +
trnT-GGU · NC_067947.1 · 30,061–30,132 bp · +
psbD · NC_067947.1 · 31,237–32,298 bp · +
psbC · NC_067947.1 · 32,246–33,667 bp · +
psbZ · NC_067947.1 · 34,375–34,563 bp · +
trnG-GCC · NC_067947.1 · 34,841–34,911 bp · +
trnS-GGA · NC_067947.1 · 43,695–43,781 bp · +
trnL-UAA · NC_067947.1 · 45,834–46,409 bp · +
trnF-GAA · NC_067947.1 · 46,700–46,772 bp · +
trnM-CAU · NC_067947.1 · 50,896–50,968 bp · +
rbcL · NC_067947.1 · 53,855–55,315 bp · +
accD · NC_067947.1 · 56,032–57,525 bp · +
psaI · NC_067947.1 · 58,208–58,318 bp · +
ycf4 · NC_067947.1 · 58,772–59,326 bp · +
cemA · NC_067947.1 · 59,996–60,685 bp · +
petA · NC_067947.1 · 60,924–61,886 bp · +
petL · NC_067947.1 · 64,568–64,663 bp · +
petG · NC_067947.1 · 64,839–64,952 bp · +
psaJ · NC_067947.1 · 65,658–65,792 bp · +
rpl33 · NC_067947.1 · 66,257–66,457 bp · +
rps18 · NC_067947.1 · 66,632–66,937 bp · +
rps12 · NC_067947.1 · 137,015–137,805 bp · +
psbB · NC_067947.1 · 71,017–72,543 bp · +
psbT · NC_067947.1 · 72,726–72,827 bp · +
psbH · NC_067947.1 · 73,128–73,349 bp · +
petB · NC_067947.1 · 73,477–74,836 bp · +
petD · NC_067947.1 · 75,026–76,228 bp · +
ycf2 · NC_067947.1 · 84,725–91,573 bp · +
ycf15 · NC_067947.1 · 91,664–91,912 bp · +
trnV-GAC · NC_067947.1 · 98,203–98,274 bp · +
rrn16 · NC_067947.1 · 98,501–99,991 bp · +
trnI-GAU · NC_067947.1 · 100,290–101,309 bp · +
trnA-UGC · NC_067947.1 · 101,372–102,255 bp · +
rrn23 · NC_067947.1 · 102,408–105,224 bp · +
rrn4.5 · NC_067947.1 · 105,324–105,426 bp · +
rrn5 · NC_067947.1 · 105,682–105,812 bp · +
trnR-ACG · NC_067947.1 · 106,046–106,119 bp · +
ycf1 · NC_067947.1 · 107,073–108,203 bp · +
rpl32 · NC_067947.1 · 110,743–110,913 bp · +
trnL-UAG · NC_067947.1 · 111,568–111,647 bp · +
ccsA · NC_067947.1 · 111,735–112,691 bp · +
trnN-GUU · NC_067947.1 · 126,882–126,953 bp · +
rps7 · NC_067947.1 · 137,859–138,326 bp · +
ndhB · NC_067947.1 · 138,645–140,798 bp · +
trnL-CAA · NC_067947.1 · 141,375–141,455 bp · +
trnI-CAU · NC_067947.1 · 148,994–149,067 bp · +
rpl23 · NC_067947.1 · 149,233–149,514 bp · +
rpl2 · NC_067947.1 · 149,533–151,022 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Elsholtzia ciliata
ANNOTATED PLASTOME
NC_067947.1
151,148 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37787 75574 113361 151148 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 6 79 74 Locate
psbA gene − 403 1461 1059 Locate
trnK-UUU gene − 1689 4259 2571 Locate
matK gene − 1998 3539 1542 Locate
rps16 gene − 4777 5916 1140 Locate
trnQ-UUG gene − 6616 6687 72 Locate
psbK gene + 7055 7240 186 Locate
psbI gene + 7630 7740 111 Locate
trnS-GCU gene − 7882 7969 88 Locate
trnG-UCC gene + 8668 9417 750 Locate
trnR-UCU gene + 9603 9674 72 Locate
atpA gene − 9779 11302 1524 Locate
atpF gene − 11407 12665 1259 Locate
atpH gene − 12938 13183 246 Locate
atpI gene − 13801 14544 744 Locate
rps2 gene − 14784 15494 711 Locate
rpoC2 gene − 15779 19897 4119 Locate
rpoC1 gene − 20074 22885 2812 Locate
rpoB gene − 22912 26124 3213 Locate
trnC-GCA gene + 27285 27355 71 Locate
petN gene + 27505 27600 96 Locate
psbM gene − 28643 28747 105 Locate
trnD-GUC gene − 29106 29179 74 Locate
trnY-GUA gene − 29290 29373 84 Locate
trnE-UUC gene − 29448 29520 73 Locate
trnT-GGU gene + 30061 30132 72 Locate
psbD gene + 31237 32298 1062 Locate
psbC gene + 32246 33667 1422 Locate
trnS-UGA gene − 33922 34004 83 Locate
psbZ gene + 34375 34563 189 Locate
trnG-GCC gene + 34841 34911 71 Locate
trnfM-CAU gene − 35088 35161 74 Locate
rps14 gene − 35306 35608 303 Locate
psaB gene − 35731 37935 2205 Locate
psaA gene − 37961 40213 2253 Locate
ycf3 gene − 40863 42828 1966 Locate
trnS-GGA gene + 43695 43781 87 Locate
rps4 gene − 44082 44687 606 Locate
trnT-UGU gene − 45071 45143 73 Locate
trnL-UAA gene + 45834 46409 576 Locate
trnF-GAA gene + 46700 46772 73 Locate
ndhJ gene − 47443 47919 477 Locate
ndhK gene − 48031 48708 678 Locate
ndhC gene − 48761 49123 363 Locate
trnV-UAC gene − 50067 50715 649 Locate
trnM-CAU gene + 50896 50968 73 Locate
atpE gene − 51186 51587 402 Locate
atpB gene − 51584 53080 1497 Locate
rbcL gene + 53855 55315 1461 Locate
accD gene + 56032 57525 1494 Locate
psaI gene + 58208 58318 111 Locate
ycf4 gene + 58772 59326 555 Locate
cemA gene + 59996 60685 690 Locate
petA gene + 60924 61886 963 Locate
psbJ gene − 62868 62990 123 Locate
psbL gene − 63125 63241 117 Locate
psbF gene − 63265 63384 120 Locate
psbE gene − 63399 63650 252 Locate
petL gene + 64568 64663 96 Locate
petG gene + 64839 64952 114 Locate
trnW-CCA gene − 65080 65153 74 Locate
trnP-UGG gene − 65289 65362 74 Locate
psaJ gene + 65658 65792 135 Locate
rpl33 gene + 66257 66457 201 Locate
rps18 gene + 66632 66937 306 Locate
rpl20 gene − 67155 67541 387 Locate
rps12 gene − 68365 68478 114 Locate
clpP gene − 68594 70550 1957 Locate
psbB gene + 71017 72543 1527 Locate
psbT gene + 72726 72827 102 Locate
psbN gene − 72893 73024 132 Locate
psbH gene + 73128 73349 222 Locate
petB gene + 73477 74836 1360 Locate
petD gene + 75026 76228 1203 Locate
rpoA gene − 76417 77424 1008 Locate
rps11 gene − 77496 77912 417 Locate
rpl36 gene − 78023 78136 114 Locate
infA gene − 78240 78473 234 Locate
rps8 gene − 78599 79003 405 Locate
rpl14 gene − 79165 79533 369 Locate
rpl16 gene − 79666 80942 1277 Locate
rps3 gene − 81085 81747 663 Locate
rpl22 gene − 81732 82199 468 Locate
rps19 gene − 82266 82544 279 Locate
rpl2 gene − 82604 84093 1490 Locate
rpl23 gene − 84112 84393 282 Locate
trnI-CAU gene − 84559 84632 74 Locate
ycf2 gene + 84725 91573 6849 Locate
ycf15 gene + 91664 91912 249 Locate
trnL-CAA gene − 92171 92251 81 Locate
ndhB gene − 92828 94981 2154 Locate
rps7 gene − 95300 95767 468 Locate
rps12 gene − 95821 96611 791 Locate
trnV-GAC gene + 98203 98274 72 Locate
rrn16 gene + 98501 99991 1491 Locate
trnI-GAU gene + 100290 101309 1020 Locate
trnA-UGC gene + 101372 102255 884 Locate
rrn23 gene + 102408 105224 2817 Locate
rrn4.5 gene + 105324 105426 103 Locate
rrn5 gene + 105682 105812 131 Locate
trnR-ACG gene + 106046 106119 74 Locate
trnN-GUU gene − 106673 106744 72 Locate
ycf1 gene + 107073 108203 1131 Locate
ndhF gene − 108097 110328 2232 Locate
rpl32 gene + 110743 110913 171 Locate
trnL-UAG gene + 111568 111647 80 Locate
ccsA gene + 111735 112691 957 Locate
ndhD gene − 112949 114451 1503 Locate
psaC gene − 114571 114816 246 Locate
ndhE gene − 115067 115372 306 Locate
ndhG gene − 115595 116125 531 Locate
ndhI gene − 116451 116957 507 Locate
ndhA gene − 117038 119146 2109 Locate
ndhH gene − 119148 120329 1182 Locate
rps15 gene − 120429 120701 273 Locate
ycf1 gene − 121121 126553 5433 Locate
trnN-GUU gene + 126882 126953 72 Locate
trnR-ACG gene − 127507 127580 74 Locate
rrn5 gene − 127814 127944 131 Locate
rrn4.5 gene − 128200 128302 103 Locate
rrn23 gene − 128402 131218 2817 Locate
trnA-UGC gene − 131371 132254 884 Locate
trnI-GAU gene − 132317 133336 1020 Locate
rrn16 gene − 133635 135125 1491 Locate
trnV-GAC gene − 135352 135423 72 Locate
rps12 gene + 137015 137805 791 Locate
rps7 gene + 137859 138326 468 Locate
ndhB gene + 138645 140798 2154 Locate
trnL-CAA gene + 141375 141455 81 Locate
ycf15 gene − 141714 141962 249 Locate
ycf2 gene − 142053 148901 6849 Locate
trnI-CAU gene + 148994 149067 74 Locate
rpl23 gene + 149233 149514 282 Locate
rpl2 gene + 149533 151022 1490 Locate
Status Available
Accession NC_067947.1
Length 151,148 bp
GC content 37.9%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources