Elsholtzia cyprianii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP357156.1 · 12–85 bp · −
psbA · PP357156.1 · 415–1,473 bp · −
trnK-UUU · PP357156.1 · 1,705–4,270 bp · −
matK · PP357156.1 · 1,978–3,537 bp · −
rps16 · PP357156.1 · 4,793–5,921 bp · −
trnQ-UUG · PP357156.1 · 6,831–6,902 bp · −
trnS-GCU · PP357156.1 · 8,124–8,211 bp · −
atpA · PP357156.1 · 10,014–11,537 bp · −
atpF · PP357156.1 · 11,640–12,891 bp · −
atpH · PP357156.1 · 13,167–13,412 bp · −
atpI · PP357156.1 · 14,447–15,190 bp · −
rps2 · PP357156.1 · 15,424–16,134 bp · −
rpoC2 · PP357156.1 · 16,365–20,546 bp · −
rpoC1 · PP357156.1 · 20,711–23,515 bp · −
rpoB · PP357156.1 · 23,542–26,754 bp · −
psbM · PP357156.1 · 29,266–29,370 bp · −
trnD-GUC · PP357156.1 · 29,734–29,807 bp · −
trnY-GUA · PP357156.1 · 29,918–30,001 bp · −
trnE-UUC · PP357156.1 · 30,080–30,152 bp · −
trnS-UGA · PP357156.1 · 34,600–34,681 bp · −
trnfM-CAU · PP357156.1 · 35,731–35,804 bp · −
rps14 · PP357156.1 · 35,949–36,251 bp · −
psaB · PP357156.1 · 36,374–38,578 bp · −
psaA · PP357156.1 · 38,604–40,856 bp · −
ycf3 · PP357156.1 · 41,525–43,498 bp · −
rps4 · PP357156.1 · 44,750–45,355 bp · −
trnT-UGU · PP357156.1 · 45,747–45,819 bp · −
ndhJ · PP357156.1 · 48,126–48,602 bp · −
ndhK · PP357156.1 · 48,714–49,391 bp · −
ndhC · PP357156.1 · 49,443–49,805 bp · −
trnV-UAC · PP357156.1 · 50,763–51,412 bp · −
atpE · PP357156.1 · 51,881–52,282 bp · −
atpB · PP357156.1 · 52,279–53,775 bp · −
psbJ · PP357156.1 · 63,468–63,590 bp · −
psbL · PP357156.1 · 63,732–63,848 bp · −
psbF · PP357156.1 · 63,872–63,991 bp · −
psbE · PP357156.1 · 64,006–64,257 bp · −
trnW-CCA · PP357156.1 · 65,672–65,745 bp · −
trnP-UGG · PP357156.1 · 65,914–65,987 bp · −
rpl20 · PP357156.1 · 67,759–68,145 bp · −
rps12 · PP357156.1 · 68,951–69,076 bp · −
rps12 · PP357156.1 · 96,428–97,218 bp · −
clpP · PP357156.1 · 69,202–71,147 bp · −
psbN · PP357156.1 · 73,484–73,615 bp · −
rpoA · PP357156.1 · 77,007–78,014 bp · −
rps11 · PP357156.1 · 78,086–78,502 bp · −
rpl36 · PP357156.1 · 78,612–78,725 bp · −
infA · PP357156.1 · 78,829–79,062 bp · −
rps8 · PP357156.1 · 79,189–79,593 bp · −
rpl14 · PP357156.1 · 79,766–80,134 bp · −
rpl16 · PP357156.1 · 80,267–81,540 bp · −
rps3 · PP357156.1 · 81,683–82,345 bp · −
rpl22 · PP357156.1 · 82,330–82,797 bp · −
rps19 · PP357156.1 · 82,880–83,158 bp · −
rpl2 · PP357156.1 · 83,219–84,707 bp · −
rpl23 · PP357156.1 · 84,726–85,007 bp · −
trnI-CAU · PP357156.1 · 85,173–85,246 bp · −
trnL-CAA · PP357156.1 · 92,778–92,858 bp · −
ndhB · PP357156.1 · 93,435–95,588 bp · −
rps7 · PP357156.1 · 95,907–96,374 bp · −
trnN-GUU · PP357156.1 · 107,322–107,393 bp · −
ndhF · PP357156.1 · 108,746–110,977 bp · −
ndhD · PP357156.1 · 113,616–115,145 bp · −
psaC · PP357156.1 · 115,242–115,487 bp · −
ndhE · PP357156.1 · 115,738–116,043 bp · −
ndhG · PP357156.1 · 116,270–116,800 bp · −
ndhI · PP357156.1 · 117,143–117,649 bp · −
ndhA · PP357156.1 · 117,731–119,848 bp · −
ndhH · PP357156.1 · 119,850–121,061 bp · −
rps15 · PP357156.1 · 121,131–121,403 bp · −
ycf1 · PP357156.1 · 121,835–127,483 bp · −
trnR-ACG · PP357156.1 · 128,333–128,406 bp · −
rrn5 · PP357156.1 · 128,650–128,770 bp · −
rrn4.5 · PP357156.1 · 129,031–129,133 bp · −
rrn23 · PP357156.1 · 129,233–132,042 bp · −
trnA-UGC · PP357156.1 · 132,202–133,085 bp · −
trnI-GAU · PP357156.1 · 133,150–134,168 bp · −
rrn16 · PP357156.1 · 134,484–135,974 bp · −
trnV-GAC · PP357156.1 · 136,201–136,272 bp · −
ycf2 · PP357156.1 · 142,902–149,759 bp · −
psbK · PP357156.1 · 7,281–7,475 bp · +
psbI · PP357156.1 · 7,862–7,972 bp · +
trnG-UCC · PP357156.1 · 8,886–9,639 bp · +
trnR-UCU · PP357156.1 · 9,838–9,909 bp · +
trnC-GCA · PP357156.1 · 27,931–28,001 bp · +
petN · PP357156.1 · 28,158–28,253 bp · +
trnT-GGU · PP357156.1 · 30,702–30,773 bp · +
psbD · PP357156.1 · 31,915–32,976 bp · +
psbC · PP357156.1 · 32,924–34,345 bp · +
psbZ · PP357156.1 · 35,025–35,213 bp · +
trnG-GCC · PP357156.1 · 35,488–35,558 bp · +
trnS-GGA · PP357156.1 · 44,360–44,446 bp · +
trnL-UAA · PP357156.1 · 46,520–47,080 bp · +
trnF-GAA · PP357156.1 · 47,375–47,447 bp · +
trnM-CAU · PP357156.1 · 51,593–51,665 bp · +
rbcL · PP357156.1 · 54,573–56,033 bp · +
accD · PP357156.1 · 56,700–58,181 bp · +
psaI · PP357156.1 · 58,888–58,998 bp · +
ycf4 · PP357156.1 · 59,452–60,006 bp · +
cemA · PP357156.1 · 60,666–61,355 bp · +
petA · PP357156.1 · 61,597–62,559 bp · +
petL · PP357156.1 · 65,159–65,254 bp · +
petG · PP357156.1 · 65,431–65,544 bp · +
psaJ · PP357156.1 · 66,270–66,404 bp · +
rpl33 · PP357156.1 · 66,838–67,038 bp · +
rps18 · PP357156.1 · 67,208–67,513 bp · +
rps12 · PP357156.1 · 137,876–138,666 bp · +
psbB · PP357156.1 · 71,606–73,132 bp · +
psbT · PP357156.1 · 73,317–73,418 bp · +
psbH · PP357156.1 · 73,721–73,942 bp · +
petB · PP357156.1 · 74,070–75,441 bp · +
petD · PP357156.1 · 75,630–76,824 bp · +
ycf2 · PP357156.1 · 85,335–92,192 bp · +
trnV-GAC · PP357156.1 · 98,822–98,893 bp · +
rrn16 · PP357156.1 · 99,120–100,610 bp · +
trnI-GAU · PP357156.1 · 100,926–101,944 bp · +
trnA-UGC · PP357156.1 · 102,009–102,892 bp · +
rrn23 · PP357156.1 · 103,052–105,861 bp · +
rrn4.5 · PP357156.1 · 105,961–106,063 bp · +
rrn5 · PP357156.1 · 106,324–106,444 bp · +
trnR-ACG · PP357156.1 · 106,688–106,761 bp · +
rpl32 · PP357156.1 · 111,367–111,537 bp · +
trnL-UAG · PP357156.1 · 112,226–112,305 bp · +
ccsA · PP357156.1 · 112,399–113,370 bp · +
trnN-GUU · PP357156.1 · 127,701–127,772 bp · +
rps7 · PP357156.1 · 138,720–139,187 bp · +
ndhB · PP357156.1 · 139,506–141,659 bp · +
trnL-CAA · PP357156.1 · 142,236–142,316 bp · +
trnI-CAU · PP357156.1 · 149,848–149,921 bp · +
rpl23 · PP357156.1 · 150,087–150,368 bp · +
rpl2 · PP357156.1 · 150,387–151,875 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Elsholtzia cyprianii
ANNOTATED PLASTOME
PP357156.1
151,978 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37994 75989 113984 151978 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 85 74 Locate
psbA gene − 415 1473 1059 Locate
trnK-UUU gene − 1705 4270 2566 Locate
matK gene − 1978 3537 1560 Locate
rps16 gene − 4793 5921 1129 Locate
trnQ-UUG gene − 6831 6902 72 Locate
psbK gene + 7281 7475 195 Locate
psbI gene + 7862 7972 111 Locate
trnS-GCU gene − 8124 8211 88 Locate
trnG-UCC gene + 8886 9639 754 Locate
trnR-UCU gene + 9838 9909 72 Locate
atpA gene − 10014 11537 1524 Locate
atpF gene − 11640 12891 1252 Locate
atpH gene − 13167 13412 246 Locate
atpI gene − 14447 15190 744 Locate
rps2 gene − 15424 16134 711 Locate
rpoC2 gene − 16365 20546 4182 Locate
rpoC1 gene − 20711 23515 2805 Locate
rpoB gene − 23542 26754 3213 Locate
trnC-GCA gene + 27931 28001 71 Locate
petN gene + 28158 28253 96 Locate
psbM gene − 29266 29370 105 Locate
trnD-GUC gene − 29734 29807 74 Locate
trnY-GUA gene − 29918 30001 84 Locate
trnE-UUC gene − 30080 30152 73 Locate
trnT-GGU gene + 30702 30773 72 Locate
psbD gene + 31915 32976 1062 Locate
psbC gene + 32924 34345 1422 Locate
trnS-UGA gene − 34600 34681 82 Locate
psbZ gene + 35025 35213 189 Locate
trnG-GCC gene + 35488 35558 71 Locate
trnfM-CAU gene − 35731 35804 74 Locate
rps14 gene − 35949 36251 303 Locate
psaB gene − 36374 38578 2205 Locate
psaA gene − 38604 40856 2253 Locate
ycf3 gene − 41525 43498 1974 Locate
trnS-GGA gene + 44360 44446 87 Locate
rps4 gene − 44750 45355 606 Locate
trnT-UGU gene − 45747 45819 73 Locate
trnL-UAA gene + 46520 47080 561 Locate
trnF-GAA gene + 47375 47447 73 Locate
ndhJ gene − 48126 48602 477 Locate
ndhK gene − 48714 49391 678 Locate
ndhC gene − 49443 49805 363 Locate
trnV-UAC gene − 50763 51412 650 Locate
trnM-CAU gene + 51593 51665 73 Locate
atpE gene − 51881 52282 402 Locate
atpB gene − 52279 53775 1497 Locate
rbcL gene + 54573 56033 1461 Locate
accD gene + 56700 58181 1482 Locate
psaI gene + 58888 58998 111 Locate
ycf4 gene + 59452 60006 555 Locate
cemA gene + 60666 61355 690 Locate
petA gene + 61597 62559 963 Locate
psbJ gene − 63468 63590 123 Locate
psbL gene − 63732 63848 117 Locate
psbF gene − 63872 63991 120 Locate
psbE gene − 64006 64257 252 Locate
petL gene + 65159 65254 96 Locate
petG gene + 65431 65544 114 Locate
trnW-CCA gene − 65672 65745 74 Locate
trnP-UGG gene − 65914 65987 74 Locate
psaJ gene + 66270 66404 135 Locate
rpl33 gene + 66838 67038 201 Locate
rps18 gene + 67208 67513 306 Locate
rpl20 gene − 67759 68145 387 Locate
rps12 gene − 68951 69076 126 Locate
clpP gene − 69202 71147 1946 Locate
psbB gene + 71606 73132 1527 Locate
psbT gene + 73317 73418 102 Locate
psbN gene − 73484 73615 132 Locate
psbH gene + 73721 73942 222 Locate
petB gene + 74070 75441 1372 Locate
petD gene + 75630 76824 1195 Locate
rpoA gene − 77007 78014 1008 Locate
rps11 gene − 78086 78502 417 Locate
rpl36 gene − 78612 78725 114 Locate
infA gene − 78829 79062 234 Locate
rps8 gene − 79189 79593 405 Locate
rpl14 gene − 79766 80134 369 Locate
rpl16 gene − 80267 81540 1274 Locate
rps3 gene − 81683 82345 663 Locate
rpl22 gene − 82330 82797 468 Locate
rps19 gene − 82880 83158 279 Locate
rpl2 gene − 83219 84707 1489 Locate
rpl23 gene − 84726 85007 282 Locate
trnI-CAU gene − 85173 85246 74 Locate
ycf2 gene + 85335 92192 6858 Locate
trnL-CAA gene − 92778 92858 81 Locate
ndhB gene − 93435 95588 2154 Locate
rps7 gene − 95907 96374 468 Locate
rps12 gene − 96428 97218 791 Locate
trnV-GAC gene + 98822 98893 72 Locate
rrn16 gene + 99120 100610 1491 Locate
trnI-GAU gene + 100926 101944 1019 Locate
trnA-UGC gene + 102009 102892 884 Locate
rrn23 gene + 103052 105861 2810 Locate
rrn4.5 gene + 105961 106063 103 Locate
rrn5 gene + 106324 106444 121 Locate
trnR-ACG gene + 106688 106761 74 Locate
trnN-GUU gene − 107322 107393 72 Locate
ndhF gene − 108746 110977 2232 Locate
rpl32 gene + 111367 111537 171 Locate
trnL-UAG gene + 112226 112305 80 Locate
ccsA gene + 112399 113370 972 Locate
ndhD gene − 113616 115145 1530 Locate
psaC gene − 115242 115487 246 Locate
ndhE gene − 115738 116043 306 Locate
ndhG gene − 116270 116800 531 Locate
ndhI gene − 117143 117649 507 Locate
ndhA gene − 117731 119848 2118 Locate
ndhH gene − 119850 121061 1212 Locate
rps15 gene − 121131 121403 273 Locate
ycf1 gene − 121835 127483 5649 Locate
trnN-GUU gene + 127701 127772 72 Locate
trnR-ACG gene − 128333 128406 74 Locate
rrn5 gene − 128650 128770 121 Locate
rrn4.5 gene − 129031 129133 103 Locate
rrn23 gene − 129233 132042 2810 Locate
trnA-UGC gene − 132202 133085 884 Locate
trnI-GAU gene − 133150 134168 1019 Locate
rrn16 gene − 134484 135974 1491 Locate
trnV-GAC gene − 136201 136272 72 Locate
rps12 gene + 137876 138666 791 Locate
rps7 gene + 138720 139187 468 Locate
ndhB gene + 139506 141659 2154 Locate
trnL-CAA gene + 142236 142316 81 Locate
ycf2 gene − 142902 149759 6858 Locate
trnI-CAU gene + 149848 149921 74 Locate
rpl23 gene + 150087 150368 282 Locate
rpl2 gene + 150387 151875 1489 Locate
Status Available
Accession PP357156.1
Length 151,978 bp
GC content 37.9%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources