Elsholtzia densa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_056994.1 · 1–72 bp · −
psbA · NC_056994.1 · 275–1,333 bp · −
trnK-UUU · NC_056994.1 · 1,564–4,158 bp · −
matK · NC_056994.1 · 1,868–3,430 bp · −
trnQ-UUG · NC_056994.1 · 6,876–6,947 bp · −
trnS-GCU · NC_056994.1 · 8,156–8,243 bp · −
atpA · NC_056994.1 · 10,059–11,582 bp · −
atpF · NC_056994.1 · 11,671–12,923 bp · −
atpH · NC_056994.1 · 13,195–13,440 bp · −
atpI · NC_056994.1 · 14,378–15,121 bp · −
rps2 · NC_056994.1 · 15,359–16,069 bp · −
rpoC2 · NC_056994.1 · 16,331–20,452 bp · −
rpoC1 · NC_056994.1 · 20,622–23,458 bp · −
rpoB · NC_056994.1 · 23,485–26,697 bp · −
psbM · NC_056994.1 · 28,868–28,972 bp · −
trnD-GUC · NC_056994.1 · 29,496–29,569 bp · −
trnY-GUA · NC_056994.1 · 29,680–29,763 bp · −
trnE-UUC · NC_056994.1 · 29,831–29,903 bp · −
trnS-UGA · NC_056994.1 · 34,038–34,120 bp · −
trnfM-CAU · NC_056994.1 · 35,161–35,234 bp · −
rps14 · NC_056994.1 · 35,384–35,686 bp · −
psaB · NC_056994.1 · 35,816–38,020 bp · −
psaA · NC_056994.1 · 38,046–40,298 bp · −
ycf3 · NC_056994.1 · 40,924–42,865 bp · −
rps4 · NC_056994.1 · 43,513–44,118 bp · −
trnT-UGU · NC_056994.1 · 44,518–44,590 bp · −
ndhJ · NC_056994.1 · 46,845–47,321 bp · −
ndhK · NC_056994.1 · 47,432–48,115 bp · −
ndhC · NC_056994.1 · 48,167–48,529 bp · −
trnV-UAC · NC_056994.1 · 49,374–50,021 bp · −
atpE · NC_056994.1 · 50,484–50,885 bp · −
atpB · NC_056994.1 · 50,882–52,378 bp · −
psbJ · NC_056994.1 · 61,915–62,037 bp · −
psbL · NC_056994.1 · 62,172–62,288 bp · −
psbF · NC_056994.1 · 62,312–62,431 bp · −
psbE · NC_056994.1 · 62,446–62,697 bp · −
trnW-CCA · NC_056994.1 · 64,121–64,194 bp · −
trnP-UGG · NC_056994.1 · 64,373–64,446 bp · −
rpl20 · NC_056994.1 · 66,198–66,584 bp · −
rps12 · NC_056994.1 · 67,402–67,515 bp · −
rps12 · NC_056994.1 · 94,895–95,123 bp · −
rps12 · NC_056994.1 · 94,333–94,358 bp · −
clpP · NC_056994.1 · 67,640–69,556 bp · −
psbN · NC_056994.1 · 71,927–72,058 bp · −
rpoA · NC_056994.1 · 75,382–76,389 bp · −
rps11 · NC_056994.1 · 76,460–76,876 bp · −
rpl36 · NC_056994.1 · 76,987–77,100 bp · −
infA · NC_056994.1 · 77,215–77,448 bp · −
rps8 · NC_056994.1 · 77,573–77,977 bp · −
rpl14 · NC_056994.1 · 78,150–78,518 bp · −
rpl16 · NC_056994.1 · 78,656–79,887 bp · −
rps3 · NC_056994.1 · 80,029–80,691 bp · −
rpl22 · NC_056994.1 · 80,676–81,143 bp · −
rps19 · NC_056994.1 · 81,210–81,488 bp · −
rpl2 · NC_056994.1 · 81,548–83,036 bp · −
rpl23 · NC_056994.1 · 83,059–83,340 bp · −
trnI-CAU · NC_056994.1 · 83,506–83,579 bp · −
trnL-CAA · NC_056994.1 · 90,684–90,764 bp · −
ndhB · NC_056994.1 · 91,351–93,504 bp · −
rps7 · NC_056994.1 · 93,812–94,279 bp · −
trnN-GUU · NC_056994.1 · 105,168–105,239 bp · −
ndhF · NC_056994.1 · 106,565–108,802 bp · −
ndhD · NC_056994.1 · 111,405–112,934 bp · −
psaC · NC_056994.1 · 113,031–113,276 bp · −
ndhE · NC_056994.1 · 113,526–113,831 bp · −
ndhG · NC_056994.1 · 114,065–114,595 bp · −
ndhI · NC_056994.1 · 114,960–115,451 bp · −
ndhA · NC_056994.1 · 115,532–117,631 bp · −
ndhH · NC_056994.1 · 117,633–118,814 bp · −
rps15 · NC_056994.1 · 118,914–119,186 bp · −
ycf1 · NC_056994.1 · 119,539–125,025 bp · −
trnR-ACG · NC_056994.1 · 125,985–126,058 bp · −
rrn5 · NC_056994.1 · 126,302–126,422 bp · −
rrn4.5 · NC_056994.1 · 126,647–126,749 bp · −
rrn23 · NC_056994.1 · 126,848–129,658 bp · −
trnA-UGC · NC_056994.1 · 129,816–130,699 bp · −
trnI-GAU · NC_056994.1 · 130,762–131,785 bp · −
rrn16 · NC_056994.1 · 132,084–133,574 bp · −
trnV-GAC · NC_056994.1 · 133,801–133,872 bp · −
ycf2 · NC_056994.1 · 140,122–146,925 bp · −
psbK · NC_056994.1 · 7,341–7,526 bp · +
psbI · NC_056994.1 · 7,859–7,987 bp · +
trnG-UCC · NC_056994.1 · 8,926–9,678 bp · +
trnR-UCU · NC_056994.1 · 9,883–9,954 bp · +
trnC-GCA · NC_056994.1 · 27,746–27,816 bp · +
petN · NC_056994.1 · 27,973–28,068 bp · +
trnT-GGU · NC_056994.1 · 30,462–30,533 bp · +
psbD · NC_056994.1 · 31,361–32,422 bp · +
psbC · NC_056994.1 · 32,370–33,791 bp · +
psbZ · NC_056994.1 · 34,473–34,661 bp · +
trnG-GCC · NC_056994.1 · 34,933–35,003 bp · +
trnS-GGA · NC_056994.1 · 43,112–43,198 bp · +
trnL-UAA · NC_056994.1 · 45,233–45,799 bp · +
trnF-GAA · NC_056994.1 · 46,105–46,177 bp · +
trnM-CAU · NC_056994.1 · 50,202–50,274 bp · +
rbcL · NC_056994.1 · 53,169–54,629 bp · +
accD · NC_056994.1 · 55,337–56,818 bp · +
psaI · NC_056994.1 · 57,535–57,645 bp · +
ycf4 · NC_056994.1 · 58,091–58,645 bp · +
cemA · NC_056994.1 · 59,312–60,001 bp · +
petA · NC_056994.1 · 60,245–61,207 bp · +
petL · NC_056994.1 · 63,604–63,699 bp · +
petG · NC_056994.1 · 63,874–63,987 bp · +
psaJ · NC_056994.1 · 64,706–64,840 bp · +
rpl33 · NC_056994.1 · 65,288–65,488 bp · +
rps18 · NC_056994.1 · 65,659–65,964 bp · +
rps12 · NC_056994.1 · 135,470–135,698 bp · +
rps12 · NC_056994.1 · 136,235–136,260 bp · +
psbB · NC_056994.1 · 70,035–71,561 bp · +
psbT · NC_056994.1 · 71,760–71,861 bp · +
psbH · NC_056994.1 · 72,146–72,385 bp · +
petB · NC_056994.1 · 72,512–73,820 bp · +
petD · NC_056994.1 · 74,009–75,219 bp · +
ycf2 · NC_056994.1 · 83,668–90,471 bp · +
trnV-GAC · NC_056994.1 · 96,721–96,792 bp · +
rrn16 · NC_056994.1 · 97,019–98,509 bp · +
trnI-GAU · NC_056994.1 · 98,808–99,831 bp · +
trnA-UGC · NC_056994.1 · 99,894–100,777 bp · +
rrn23 · NC_056994.1 · 100,935–103,745 bp · +
rrn4.5 · NC_056994.1 · 103,844–103,946 bp · +
rrn5 · NC_056994.1 · 104,171–104,291 bp · +
trnR-ACG · NC_056994.1 · 104,535–104,608 bp · +
rpl32 · NC_056994.1 · 109,208–109,393 bp · +
trnL-UAG · NC_056994.1 · 110,030–110,109 bp · +
ccsA · NC_056994.1 · 110,210–111,190 bp · +
trnN-GUU · NC_056994.1 · 125,354–125,425 bp · +
rps7 · NC_056994.1 · 136,314–136,781 bp · +
ndhB · NC_056994.1 · 137,089–139,242 bp · +
trnL-CAA · NC_056994.1 · 139,829–139,909 bp · +
trnI-CAU · NC_056994.1 · 147,014–147,087 bp · +
rpl23 · NC_056994.1 · 147,253–147,534 bp · +
rpl2 · NC_056994.1 · 147,557–149,045 bp · +
0 kb
12 kb
24 kb
36 kb
48 kb
60 kb
72 kb
84 kb
96 kb
108 kb
120 kb
132 kb
144 kb
Elsholtzia densa
ANNOTATED PLASTOME
NC_056994.1
149,095 bp · 129 genes
Gene function
Transfer RNA
Photosystem II
Other
ATP synthase
Ribosomal protein
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37274 74548 111821 149095 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 72 72 Locate
psbA gene − 275 1333 1059 Locate
trnK-UUU gene − 1564 4158 2595 Locate
matK gene − 1868 3430 1563 Locate
trnQ-UUG gene − 6876 6947 72 Locate
psbK gene + 7341 7526 186 Locate
psbI gene + 7859 7987 129 Locate
trnS-GCU gene − 8156 8243 88 Locate
trnG-UCC gene + 8926 9678 753 Locate
trnR-UCU gene + 9883 9954 72 Locate
atpA gene − 10059 11582 1524 Locate
atpF gene − 11671 12923 1253 Locate
atpH gene − 13195 13440 246 Locate
atpI gene − 14378 15121 744 Locate
rps2 gene − 15359 16069 711 Locate
rpoC2 gene − 16331 20452 4122 Locate
rpoC1 gene − 20622 23458 2837 Locate
rpoB gene − 23485 26697 3213 Locate
trnC-GCA gene + 27746 27816 71 Locate
petN gene + 27973 28068 96 Locate
psbM gene − 28868 28972 105 Locate
trnD-GUC gene − 29496 29569 74 Locate
trnY-GUA gene − 29680 29763 84 Locate
trnE-UUC gene − 29831 29903 73 Locate
trnT-GGU gene + 30462 30533 72 Locate
psbD gene + 31361 32422 1062 Locate
psbC gene + 32370 33791 1422 Locate
trnS-UGA gene − 34038 34120 83 Locate
psbZ gene + 34473 34661 189 Locate
trnG-GCC gene + 34933 35003 71 Locate
trnfM-CAU gene − 35161 35234 74 Locate
rps14 gene − 35384 35686 303 Locate
psaB gene − 35816 38020 2205 Locate
psaA gene − 38046 40298 2253 Locate
ycf3 gene − 40924 42865 1942 Locate
trnS-GGA gene + 43112 43198 87 Locate
rps4 gene − 43513 44118 606 Locate
trnT-UGU gene − 44518 44590 73 Locate
trnL-UAA gene + 45233 45799 567 Locate
trnF-GAA gene + 46105 46177 73 Locate
ndhJ gene − 46845 47321 477 Locate
ndhK gene − 47432 48115 684 Locate
ndhC gene − 48167 48529 363 Locate
trnV-UAC gene − 49374 50021 648 Locate
trnM-CAU gene + 50202 50274 73 Locate
atpE gene − 50484 50885 402 Locate
atpB gene − 50882 52378 1497 Locate
rbcL gene + 53169 54629 1461 Locate
accD gene + 55337 56818 1482 Locate
psaI gene + 57535 57645 111 Locate
ycf4 gene + 58091 58645 555 Locate
cemA gene + 59312 60001 690 Locate
petA gene + 60245 61207 963 Locate
psbJ gene − 61915 62037 123 Locate
psbL gene − 62172 62288 117 Locate
psbF gene − 62312 62431 120 Locate
psbE gene − 62446 62697 252 Locate
petL gene + 63604 63699 96 Locate
petG gene + 63874 63987 114 Locate
trnW-CCA gene − 64121 64194 74 Locate
trnP-UGG gene − 64373 64446 74 Locate
psaJ gene + 64706 64840 135 Locate
rpl33 gene + 65288 65488 201 Locate
rps18 gene + 65659 65964 306 Locate
rpl20 gene − 66198 66584 387 Locate
rps12 gene − 67402 67515 114 Locate
clpP gene − 67640 69556 1917 Locate
psbB gene + 70035 71561 1527 Locate
psbT gene + 71760 71861 102 Locate
psbN gene − 71927 72058 132 Locate
psbH gene + 72146 72385 240 Locate
petB gene + 72512 73820 1309 Locate
petD gene + 74009 75219 1211 Locate
rpoA gene − 75382 76389 1008 Locate
rps11 gene − 76460 76876 417 Locate
rpl36 gene − 76987 77100 114 Locate
infA gene − 77215 77448 234 Locate
rps8 gene − 77573 77977 405 Locate
rpl14 gene − 78150 78518 369 Locate
rpl16 gene − 78656 79887 1232 Locate
rps3 gene − 80029 80691 663 Locate
rpl22 gene − 80676 81143 468 Locate
rps19 gene − 81210 81488 279 Locate
rpl2 gene − 81548 83036 1489 Locate
rpl23 gene − 83059 83340 282 Locate
trnI-CAU gene − 83506 83579 74 Locate
ycf2 gene + 83668 90471 6804 Locate
trnL-CAA gene − 90684 90764 81 Locate
ndhB gene − 91351 93504 2154 Locate
rps7 gene − 93812 94279 468 Locate
rps12 gene − 94333 94358 26 Locate
rps12 gene − 94895 95123 229 Locate
trnV-GAC gene + 96721 96792 72 Locate
rrn16 gene + 97019 98509 1491 Locate
trnI-GAU gene + 98808 99831 1024 Locate
trnA-UGC gene + 99894 100777 884 Locate
rrn23 gene + 100935 103745 2811 Locate
rrn4.5 gene + 103844 103946 103 Locate
rrn5 gene + 104171 104291 121 Locate
trnR-ACG gene + 104535 104608 74 Locate
trnN-GUU gene − 105168 105239 72 Locate
ndhF gene − 106565 108802 2238 Locate
rpl32 gene + 109208 109393 186 Locate
trnL-UAG gene + 110030 110109 80 Locate
ccsA gene + 110210 111190 981 Locate
ndhD gene − 111405 112934 1530 Locate
psaC gene − 113031 113276 246 Locate
ndhE gene − 113526 113831 306 Locate
ndhG gene − 114065 114595 531 Locate
ndhI gene − 114960 115451 492 Locate
ndhA gene − 115532 117631 2100 Locate
ndhH gene − 117633 118814 1182 Locate
rps15 gene − 118914 119186 273 Locate
ycf1 gene − 119539 125025 5487 Locate
trnN-GUU gene + 125354 125425 72 Locate
trnR-ACG gene − 125985 126058 74 Locate
rrn5 gene − 126302 126422 121 Locate
rrn4.5 gene − 126647 126749 103 Locate
rrn23 gene − 126848 129658 2811 Locate
trnA-UGC gene − 129816 130699 884 Locate
trnI-GAU gene − 130762 131785 1024 Locate
rrn16 gene − 132084 133574 1491 Locate
trnV-GAC gene − 133801 133872 72 Locate
rps12 gene + 135470 135698 229 Locate
rps12 gene + 136235 136260 26 Locate
rps7 gene + 136314 136781 468 Locate
ndhB gene + 137089 139242 2154 Locate
trnL-CAA gene + 139829 139909 81 Locate
ycf2 gene − 140122 146925 6804 Locate
trnI-CAU gene + 147014 147087 74 Locate
rpl23 gene + 147253 147534 282 Locate
rpl2 gene + 147557 149045 1489 Locate
Status Available
Accession NC_056994.1
Length 149,095 bp
GC content 37.9%
Annotated genes 129
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Atp Synthase 6 Ribosomal Protein 27 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources