Elsholtzia fruticosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GTG · NC_063697.1 · 11–84 bp · −
psbA · NC_063697.1 · 402–1,460 bp · −
trnK-UUU · NC_063697.1 · 1,688–4,269 bp · −
matK · NC_063697.1 · 1,997–3,538 bp · −
rps16 · NC_063697.1 · 4,793–5,920 bp · −
trnQ-UUG · NC_063697.1 · 6,724–6,795 bp · −
trnS-GCT · NC_063697.1 · 8,008–8,095 bp · −
atpA · NC_063697.1 · 9,883–11,406 bp · −
atpF · NC_063697.1 · 11,506–12,756 bp · −
atpH · NC_063697.1 · 13,029–13,274 bp · −
atpI · NC_063697.1 · 13,904–14,647 bp · −
rps2 · NC_063697.1 · 14,880–15,590 bp · −
rpoC2 · NC_063697.1 · 15,825–20,009 bp · −
rpoC1 · NC_063697.1 · 22,550–22,979 bp · −
rpoC1 · NC_063697.1 · 20,174–21,798 bp · −
rpoC1 · NC_063697.1 · 20,174–23,000 bp · −
rpoB · NC_063697.1 · 23,006–26,218 bp · −
psbM · NC_063697.1 · 28,722–28,826 bp · −
trnD-GUC · NC_063697.1 · 29,354–29,427 bp · −
trnY-GTA · NC_063697.1 · 29,538–29,621 bp · −
trnE-TTC · NC_063697.1 · 29,695–29,767 bp · −
trnS-UGA · NC_063697.1 · 34,215–34,297 bp · −
trnM-CAT · NC_063697.1 · 35,341–35,414 bp · −
rps14 · NC_063697.1 · 35,559–35,861 bp · −
psaB · NC_063697.1 · 35,984–38,188 bp · −
psaA · NC_063697.1 · 38,214–40,466 bp · −
ycf3 · NC_063697.1 · 41,127–43,101 bp · −
rps4 · NC_063697.1 · 44,338–44,943 bp · −
trnT-UGU · NC_063697.1 · 45,320–45,392 bp · −
ndhJ · NC_063697.1 · 47,690–48,166 bp · −
ndhK · NC_063697.1 · 48,278–48,955 bp · −
ndhC · NC_063697.1 · 49,007–49,369 bp · −
trnV-UAC · NC_063697.1 · 50,316–50,965 bp · −
atpE · NC_063697.1 · 51,436–51,837 bp · −
atpB · NC_063697.1 · 51,834–53,330 bp · −
psbJ · NC_063697.1 · 63,129–63,251 bp · −
psbL · NC_063697.1 · 63,386–63,502 bp · −
psbF · NC_063697.1 · 63,526–63,645 bp · −
psbE · NC_063697.1 · 63,660–63,911 bp · −
trnW-CCA · NC_063697.1 · 65,337–65,410 bp · −
trnP-UGG · NC_063697.1 · 65,572–65,645 bp · −
rpl20 · NC_063697.1 · 67,446–67,832 bp · −
rps12 · NC_063697.1 · 68,648–68,761 bp · −
rps12 · NC_063697.1 · 96,093–96,886 bp · −
clpP · NC_063697.1 · 68,877–70,822 bp · −
psbN · NC_063697.1 · 73,161–73,292 bp · −
rpoA · NC_063697.1 · 76,679–77,686 bp · −
rps11 · NC_063697.1 · 77,758–78,174 bp · −
rpl36 · NC_063697.1 · 78,285–78,398 bp · −
infA · NC_063697.1 · 78,502–78,735 bp · −
rps8 · NC_063697.1 · 78,863–79,267 bp · −
rpl14 · NC_063697.1 · 79,440–79,808 bp · −
rpl16 · NC_063697.1 · 79,941–81,220 bp · −
rps3 · NC_063697.1 · 81,363–82,025 bp · −
rpl22 · NC_063697.1 · 82,010–82,477 bp · −
rps19 · NC_063697.1 · 82,543–82,821 bp · −
rpl2 · NC_063697.1 · 82,884–84,372 bp · −
rpl23 · NC_063697.1 · 84,391–84,672 bp · −
trnI-CAT · NC_063697.1 · 84,838–84,911 bp · −
trnL-CAA · NC_063697.1 · 92,443–92,523 bp · −
ndhB · NC_063697.1 · 93,100–95,307 bp · −
rps7 · NC_063697.1 · 95,572–96,039 bp · −
trnN-GTT · NC_063697.1 · 106,961–107,032 bp · −
ndhF · NC_063697.1 · 108,385–110,616 bp · −
ndhD · NC_063697.1 · 113,271–114,800 bp · −
psaC · NC_063697.1 · 114,896–115,141 bp · −
ndhE · NC_063697.1 · 115,392–115,697 bp · −
ndhG · NC_063697.1 · 115,916–116,446 bp · −
ndhI · NC_063697.1 · 116,786–117,292 bp · −
ndhA · NC_063697.1 · 117,373–119,500 bp · −
ndhH · NC_063697.1 · 119,502–120,683 bp · −
rps15 · NC_063697.1 · 120,783–121,118 bp · −
ycf1 · NC_063697.1 · 121,470–127,079 bp · −
trnR-ACG · NC_063697.1 · 127,922–127,995 bp · −
NDA70_pgr004 · NC_063697.1 · 128,229–128,359 bp · −
NDA70_pgr003 · NC_063697.1 · 128,620–128,722 bp · −
rrn23 · NC_063697.1 · 128,821–131,631 bp · −
trnA-UGC · NC_063697.1 · 131,799–132,682 bp · −
trnI-GAU · NC_063697.1 · 132,747–133,765 bp · −
NDA70_pgr001 · NC_063697.1 · 134,064–135,554 bp · −
trnV-GAC · NC_063697.1 · 135,781–135,852 bp · −
ycf15 · NC_063697.1 · 142,142–142,390 bp · −
ycf2 · NC_063697.1 · 142,481–149,329 bp · −
psbK · NC_063697.1 · 7,178–7,363 bp · +
psbI · NC_063697.1 · 7,755–7,865 bp · +
trnG-UCC · NC_063697.1 · 8,774–9,522 bp · +
trnR-TCT · NC_063697.1 · 9,707–9,778 bp · +
trnC-GCA · NC_063697.1 · 27,375–27,445 bp · +
petN · NC_063697.1 · 27,602–27,697 bp · +
trnT-GGT · NC_063697.1 · 30,314–30,385 bp · +
psbD · NC_063697.1 · 31,539–32,600 bp · +
psbC · NC_063697.1 · 32,548–33,969 bp · +
psbZ · NC_063697.1 · 34,645–34,833 bp · +
trnG-GCC · NC_063697.1 · 35,098–35,168 bp · +
trnS-GGA · NC_063697.1 · 43,948–44,034 bp · +
trnL-UAA · NC_063697.1 · 46,070–46,643 bp · +
trnF-GAA · NC_063697.1 · 46,940–47,012 bp · +
trnM-CAT · NC_063697.1 · 51,146–51,218 bp · +
rbcL · NC_063697.1 · 54,132–55,571 bp · +
accD · NC_063697.1 · 56,289–57,770 bp · +
psaI · NC_063697.1 · 58,464–58,574 bp · +
ycf4 · NC_063697.1 · 59,026–59,580 bp · +
cemA · NC_063697.1 · 60,247–60,936 bp · +
petA · NC_063697.1 · 61,175–62,137 bp · +
petL · NC_063697.1 · 64,824–64,919 bp · +
petG · NC_063697.1 · 65,096–65,209 bp · +
psaJ · NC_063697.1 · 65,939–66,073 bp · +
rpl33 · NC_063697.1 · 66,531–66,731 bp · +
rps18 · NC_063697.1 · 66,902–67,207 bp · +
rps12 · NC_063697.1 · 137,443–138,236 bp · +
psbB · NC_063697.1 · 71,280–72,806 bp · +
psbT · NC_063697.1 · 72,994–73,095 bp · +
psbH · NC_063697.1 · 73,396–73,617 bp · +
petB · NC_063697.1 · 73,745–75,113 bp · +
petD · NC_063697.1 · 75,302–76,496 bp · +
ycf2 · NC_063697.1 · 85,000–91,848 bp · +
ycf15 · NC_063697.1 · 91,939–92,187 bp · +
trnV-GAC · NC_063697.1 · 98,477–98,548 bp · +
NDA70_pgr008 · NC_063697.1 · 98,775–100,265 bp · +
trnI-GAU · NC_063697.1 · 100,564–101,582 bp · +
trnA-UGC · NC_063697.1 · 101,647–102,530 bp · +
rrn23 · NC_063697.1 · 102,698–105,508 bp · +
NDA70_pgr006 · NC_063697.1 · 105,607–105,709 bp · +
NDA70_pgr005 · NC_063697.1 · 105,970–106,100 bp · +
trnR-ACG · NC_063697.1 · 106,334–106,407 bp · +
rpl32 · NC_063697.1 · 111,025–111,195 bp · +
trnL-UAG · NC_063697.1 · 111,885–111,964 bp · +
ccsA · NC_063697.1 · 112,052–113,023 bp · +
trnN-GTT · NC_063697.1 · 127,297–127,368 bp · +
rps7 · NC_063697.1 · 138,290–138,757 bp · +
ndhB · NC_063697.1 · 139,022–141,229 bp · +
trnL-CAA · NC_063697.1 · 141,806–141,886 bp · +
trnI-CAT · NC_063697.1 · 149,418–149,491 bp · +
rpl23 · NC_063697.1 · 149,657–149,938 bp · +
rpl2 · NC_063697.1 · 149,957–151,445 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Elsholtzia fruticosa
ANNOTATED PLASTOME
NC_063697.1
151,550 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37888 75775 113662 151550 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-TCT trnC-GCA petN trnT-GGT psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAT rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC NDA70_pgr008 trnI-GAU trnA-UGC rrn23 NDA70_pgr006 NDA70_pgr005 trnR-ACG rpl32 trnL-UAG ccsA trnN-GTT rps12 rps7 ndhB trnL-CAA trnI-CAT rpl23 rpl2
trnH-GTG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCT atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoC1 rpoC1 rpoB psbM trnD-GUC trnY-GTA trnE-TTC trnS-UGA trnM-CAT rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAT trnL-CAA ndhB rps7 rps12 trnN-GTT ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG NDA70_pgr004 NDA70_pgr003 rrn23 trnA-UGC trnI-GAU NDA70_pgr001 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GTG gene − 11 84 74 Locate
psbA gene − 402 1460 1059 Locate
trnK-UUU gene − 1688 4269 2582 Locate
matK gene − 1997 3538 1542 Locate
rps16 gene − 4793 5920 1128 Locate
trnQ-UUG gene − 6724 6795 72 Locate
psbK gene + 7178 7363 186 Locate
psbI gene + 7755 7865 111 Locate
trnS-GCT gene − 8008 8095 88 Locate
trnG-UCC gene + 8774 9522 749 Locate
trnR-TCT gene + 9707 9778 72 Locate
atpA gene − 9883 11406 1524 Locate
atpF gene − 11506 12756 1251 Locate
atpH gene − 13029 13274 246 Locate
atpI gene − 13904 14647 744 Locate
rps2 gene − 14880 15590 711 Locate
rpoC2 gene − 15825 20009 4185 Locate
rpoC1 CDS − 20174 21798 1625 Locate
rpoC1 gene − 20174 23000 2827 Locate
rpoC1 CDS − 22550 22979 430 Locate
rpoB gene − 23006 26218 3213 Locate
trnC-GCA gene + 27375 27445 71 Locate
petN gene + 27602 27697 96 Locate
psbM gene − 28722 28826 105 Locate
trnD-GUC gene − 29354 29427 74 Locate
trnY-GTA gene − 29538 29621 84 Locate
trnE-TTC gene − 29695 29767 73 Locate
trnT-GGT gene + 30314 30385 72 Locate
psbD gene + 31539 32600 1062 Locate
psbC gene + 32548 33969 1422 Locate
trnS-UGA gene − 34215 34297 83 Locate
psbZ gene + 34645 34833 189 Locate
trnG-GCC gene + 35098 35168 71 Locate
trnM-CAT gene − 35341 35414 74 Locate
rps14 gene − 35559 35861 303 Locate
psaB gene − 35984 38188 2205 Locate
psaA gene − 38214 40466 2253 Locate
ycf3 gene − 41127 43101 1975 Locate
trnS-GGA gene + 43948 44034 87 Locate
rps4 gene − 44338 44943 606 Locate
trnT-UGU gene − 45320 45392 73 Locate
trnL-UAA gene + 46070 46643 574 Locate
trnF-GAA gene + 46940 47012 73 Locate
ndhJ gene − 47690 48166 477 Locate
ndhK gene − 48278 48955 678 Locate
ndhC gene − 49007 49369 363 Locate
trnV-UAC gene − 50316 50965 650 Locate
trnM-CAT gene + 51146 51218 73 Locate
atpE gene − 51436 51837 402 Locate
atpB gene − 51834 53330 1497 Locate
rbcL gene + 54132 55571 1440 Locate
accD gene + 56289 57770 1482 Locate
psaI gene + 58464 58574 111 Locate
ycf4 gene + 59026 59580 555 Locate
cemA gene + 60247 60936 690 Locate
petA gene + 61175 62137 963 Locate
psbJ gene − 63129 63251 123 Locate
psbL gene − 63386 63502 117 Locate
psbF gene − 63526 63645 120 Locate
psbE gene − 63660 63911 252 Locate
petL gene + 64824 64919 96 Locate
petG gene + 65096 65209 114 Locate
trnW-CCA gene − 65337 65410 74 Locate
trnP-UGG gene − 65572 65645 74 Locate
psaJ gene + 65939 66073 135 Locate
rpl33 gene + 66531 66731 201 Locate
rps18 gene + 66902 67207 306 Locate
rpl20 gene − 67446 67832 387 Locate
rps12 gene − 68648 68761 114 Locate
clpP gene − 68877 70822 1946 Locate
psbB gene + 71280 72806 1527 Locate
psbT gene + 72994 73095 102 Locate
psbN gene − 73161 73292 132 Locate
psbH gene + 73396 73617 222 Locate
petB gene + 73745 75113 1369 Locate
petD gene + 75302 76496 1195 Locate
rpoA gene − 76679 77686 1008 Locate
rps11 gene − 77758 78174 417 Locate
rpl36 gene − 78285 78398 114 Locate
infA gene − 78502 78735 234 Locate
rps8 gene − 78863 79267 405 Locate
rpl14 gene − 79440 79808 369 Locate
rpl16 gene − 79941 81220 1280 Locate
rps3 gene − 81363 82025 663 Locate
rpl22 gene − 82010 82477 468 Locate
rps19 gene − 82543 82821 279 Locate
rpl2 gene − 82884 84372 1489 Locate
rpl23 gene − 84391 84672 282 Locate
trnI-CAT gene − 84838 84911 74 Locate
ycf2 gene + 85000 91848 6849 Locate
ycf15 gene + 91939 92187 249 Locate
trnL-CAA gene − 92443 92523 81 Locate
ndhB gene − 93100 95307 2208 Locate
rps7 gene − 95572 96039 468 Locate
rps12 gene − 96093 96886 794 Locate
trnV-GAC gene + 98477 98548 72 Locate
NDA70_pgr008 gene + 98775 100265 1491 Locate
trnI-GAU gene + 100564 101582 1019 Locate
trnA-UGC gene + 101647 102530 884 Locate
rrn23 gene + 102698 105508 2811 Locate
NDA70_pgr006 gene + 105607 105709 103 Locate
NDA70_pgr005 gene + 105970 106100 131 Locate
trnR-ACG gene + 106334 106407 74 Locate
trnN-GTT gene − 106961 107032 72 Locate
ndhF gene − 108385 110616 2232 Locate
rpl32 gene + 111025 111195 171 Locate
trnL-UAG gene + 111885 111964 80 Locate
ccsA gene + 112052 113023 972 Locate
ndhD gene − 113271 114800 1530 Locate
psaC gene − 114896 115141 246 Locate
ndhE gene − 115392 115697 306 Locate
ndhG gene − 115916 116446 531 Locate
ndhI gene − 116786 117292 507 Locate
ndhA gene − 117373 119500 2128 Locate
ndhH gene − 119502 120683 1182 Locate
rps15 gene − 120783 121118 336 Locate
ycf1 gene − 121470 127079 5610 Locate
trnN-GTT gene + 127297 127368 72 Locate
trnR-ACG gene − 127922 127995 74 Locate
NDA70_pgr004 gene − 128229 128359 131 Locate
NDA70_pgr003 gene − 128620 128722 103 Locate
rrn23 gene − 128821 131631 2811 Locate
trnA-UGC gene − 131799 132682 884 Locate
trnI-GAU gene − 132747 133765 1019 Locate
NDA70_pgr001 gene − 134064 135554 1491 Locate
trnV-GAC gene − 135781 135852 72 Locate
rps12 gene + 137443 138236 794 Locate
rps7 gene + 138290 138757 468 Locate
ndhB gene + 139022 141229 2208 Locate
trnL-CAA gene + 141806 141886 81 Locate
ycf15 gene − 142142 142390 249 Locate
ycf2 gene − 142481 149329 6849 Locate
trnI-CAT gene + 149418 149491 74 Locate
rpl23 gene + 149657 149938 282 Locate
rpl2 gene + 149957 151445 1489 Locate
Status Available
Accession NC_063697.1
Length 151,550 bp
GC content 38.0%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 20 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 6 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 2
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources