Elsholtzia glabra chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP357161.1 · 11–84 bp · −
psbA · PP357161.1 · 401–1,459 bp · −
trnK-UUU · PP357161.1 · 1,688–4,270 bp · −
matK · PP357161.1 · 1,996–3,537 bp · −
rps16 · PP357161.1 · 4,790–5,917 bp · −
trnQ-UUG · PP357161.1 · 6,722–6,793 bp · −
trnS-GCU · PP357161.1 · 8,008–8,095 bp · −
atpA · PP357161.1 · 9,883–11,406 bp · −
atpF · PP357161.1 · 11,506–12,754 bp · −
atpH · PP357161.1 · 13,027–13,272 bp · −
atpI · PP357161.1 · 13,902–14,645 bp · −
rps2 · PP357161.1 · 14,878–15,588 bp · −
rpoC2 · PP357161.1 · 15,822–20,006 bp · −
rpoC1 · PP357161.1 · 20,171–22,976 bp · −
rpoB · PP357161.1 · 23,003–26,215 bp · −
psbM · PP357161.1 · 28,716–28,820 bp · −
trnD-GUC · PP357161.1 · 29,348–29,421 bp · −
trnY-GUA · PP357161.1 · 29,532–29,615 bp · −
trnE-UUC · PP357161.1 · 29,688–29,760 bp · −
trnS-UGA · PP357161.1 · 34,212–34,293 bp · −
trnfM-CAU · PP357161.1 · 35,336–35,409 bp · −
rps14 · PP357161.1 · 35,554–35,856 bp · −
psaB · PP357161.1 · 35,979–38,183 bp · −
psaA · PP357161.1 · 38,209–40,461 bp · −
ycf3 · PP357161.1 · 41,126–43,098 bp · −
rps4 · PP357161.1 · 44,325–44,930 bp · −
trnT-UGU · PP357161.1 · 45,305–45,377 bp · −
ndhJ · PP357161.1 · 47,674–48,150 bp · −
ndhK · PP357161.1 · 48,262–48,939 bp · −
ndhC · PP357161.1 · 48,991–49,353 bp · −
trnV-UAC · PP357161.1 · 50,301–50,950 bp · −
atpE · PP357161.1 · 51,421–51,822 bp · −
atpB · PP357161.1 · 51,819–53,315 bp · −
psbJ · PP357161.1 · 63,114–63,236 bp · −
psbL · PP357161.1 · 63,371–63,487 bp · −
psbF · PP357161.1 · 63,511–63,630 bp · −
psbE · PP357161.1 · 63,645–63,896 bp · −
trnW-CCA · PP357161.1 · 65,322–65,395 bp · −
trnP-UGG · PP357161.1 · 65,559–65,632 bp · −
rpl20 · PP357161.1 · 67,465–67,818 bp · −
rps12 · PP357161.1 · 68,617–68,742 bp · −
rps12 · PP357161.1 · 96,070–96,860 bp · −
clpP · PP357161.1 · 68,858–70,802 bp · −
psbN · PP357161.1 · 73,142–73,273 bp · −
rpoA · PP357161.1 · 76,655–77,662 bp · −
rps11 · PP357161.1 · 77,734–78,150 bp · −
rpl36 · PP357161.1 · 78,261–78,374 bp · −
infA · PP357161.1 · 78,478–78,711 bp · −
rps8 · PP357161.1 · 78,837–79,241 bp · −
rpl14 · PP357161.1 · 79,417–79,785 bp · −
rpl16 · PP357161.1 · 79,918–81,197 bp · −
rps3 · PP357161.1 · 81,340–82,002 bp · −
rpl22 · PP357161.1 · 81,987–82,454 bp · −
rps19 · PP357161.1 · 82,520–82,798 bp · −
rpl2 · PP357161.1 · 82,861–84,349 bp · −
rpl23 · PP357161.1 · 84,368–84,649 bp · −
trnI-CAU · PP357161.1 · 84,815–84,888 bp · −
trnL-CAA · PP357161.1 · 92,420–92,500 bp · −
ndhB · PP357161.1 · 93,077–95,230 bp · −
rps7 · PP357161.1 · 95,549–96,016 bp · −
trnN-GUU · PP357161.1 · 106,938–107,009 bp · −
ndhF · PP357161.1 · 108,362–110,593 bp · −
ndhD · PP357161.1 · 113,244–114,773 bp · −
psaC · PP357161.1 · 114,869–115,114 bp · −
ndhE · PP357161.1 · 115,365–115,670 bp · −
ndhG · PP357161.1 · 115,890–116,420 bp · −
ndhI · PP357161.1 · 116,760–117,266 bp · −
ndhA · PP357161.1 · 117,347–119,474 bp · −
ndhH · PP357161.1 · 119,476–120,687 bp · −
rps15 · PP357161.1 · 120,757–121,029 bp · −
ycf1 · PP357161.1 · 121,444–127,053 bp · −
trnR-ACG · PP357161.1 · 127,896–127,969 bp · −
rrn5 · PP357161.1 · 128,213–128,333 bp · −
rrn4.5 · PP357161.1 · 128,594–128,696 bp · −
rrn23 · PP357161.1 · 128,796–131,605 bp · −
trnA-UGC · PP357161.1 · 131,773–132,656 bp · −
trnI-GAU · PP357161.1 · 132,721–133,739 bp · −
rrn16 · PP357161.1 · 134,038–135,528 bp · −
trnV-GAC · PP357161.1 · 135,755–135,826 bp · −
ycf2 · PP357161.1 · 142,455–149,303 bp · −
psbK · PP357161.1 · 7,167–7,361 bp · +
psbI · PP357161.1 · 7,753–7,863 bp · +
trnG-UCC · PP357161.1 · 8,775–9,522 bp · +
trnR-UCU · PP357161.1 · 9,707–9,778 bp · +
trnC-GCA · PP357161.1 · 27,372–27,442 bp · +
petN · PP357161.1 · 27,599–27,694 bp · +
trnT-GGU · PP357161.1 · 30,309–30,380 bp · +
psbD · PP357161.1 · 31,535–32,596 bp · +
psbC · PP357161.1 · 32,544–33,965 bp · +
psbZ · PP357161.1 · 34,641–34,829 bp · +
trnG-GCC · PP357161.1 · 35,094–35,164 bp · +
trnS-GGA · PP357161.1 · 43,935–44,021 bp · +
trnL-UAA · PP357161.1 · 46,055–46,628 bp · +
trnF-GAA · PP357161.1 · 46,925–46,997 bp · +
trnM-CAU · PP357161.1 · 51,131–51,203 bp · +
rbcL · PP357161.1 · 54,096–55,556 bp · +
accD · PP357161.1 · 56,274–57,755 bp · +
psaI · PP357161.1 · 58,452–58,562 bp · +
ycf4 · PP357161.1 · 59,014–59,568 bp · +
cemA · PP357161.1 · 60,235–60,924 bp · +
petA · PP357161.1 · 61,163–62,125 bp · +
petL · PP357161.1 · 64,809–64,904 bp · +
petG · PP357161.1 · 65,081–65,194 bp · +
psaJ · PP357161.1 · 65,926–66,060 bp · +
rpl33 · PP357161.1 · 66,518–66,718 bp · +
rps18 · PP357161.1 · 66,889–67,194 bp · +
rps12 · PP357161.1 · 137,420–138,210 bp · +
psbB · PP357161.1 · 71,260–72,786 bp · +
psbT · PP357161.1 · 72,975–73,076 bp · +
psbH · PP357161.1 · 73,377–73,598 bp · +
petB · PP357161.1 · 73,726–75,094 bp · +
petD · PP357161.1 · 75,283–76,472 bp · +
ycf2 · PP357161.1 · 84,977–91,825 bp · +
trnV-GAC · PP357161.1 · 98,454–98,525 bp · +
rrn16 · PP357161.1 · 98,752–100,242 bp · +
trnI-GAU · PP357161.1 · 100,541–101,559 bp · +
trnA-UGC · PP357161.1 · 101,624–102,507 bp · +
rrn23 · PP357161.1 · 102,675–105,484 bp · +
rrn4.5 · PP357161.1 · 105,584–105,686 bp · +
rrn5 · PP357161.1 · 105,947–106,067 bp · +
trnR-ACG · PP357161.1 · 106,311–106,384 bp · +
rpl32 · PP357161.1 · 111,000–111,170 bp · +
trnL-UAG · PP357161.1 · 111,860–111,939 bp · +
ccsA · PP357161.1 · 112,027–112,998 bp · +
trnN-GUU · PP357161.1 · 127,271–127,342 bp · +
rps7 · PP357161.1 · 138,264–138,731 bp · +
ndhB · PP357161.1 · 139,050–141,203 bp · +
trnL-CAA · PP357161.1 · 141,780–141,860 bp · +
trnI-CAU · PP357161.1 · 149,392–149,465 bp · +
rpl23 · PP357161.1 · 149,631–149,912 bp · +
rpl2 · PP357161.1 · 149,931–151,419 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Elsholtzia glabra
ANNOTATED PLASTOME
PP357161.1
151,524 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37881 75762 113643 151524 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 401 1459 1059 Locate
trnK-UUU gene − 1688 4270 2583 Locate
matK gene − 1996 3537 1542 Locate
rps16 gene − 4790 5917 1128 Locate
trnQ-UUG gene − 6722 6793 72 Locate
psbK gene + 7167 7361 195 Locate
psbI gene + 7753 7863 111 Locate
trnS-GCU gene − 8008 8095 88 Locate
trnG-UCC gene + 8775 9522 748 Locate
trnR-UCU gene + 9707 9778 72 Locate
atpA gene − 9883 11406 1524 Locate
atpF gene − 11506 12754 1249 Locate
atpH gene − 13027 13272 246 Locate
atpI gene − 13902 14645 744 Locate
rps2 gene − 14878 15588 711 Locate
rpoC2 gene − 15822 20006 4185 Locate
rpoC1 gene − 20171 22976 2806 Locate
rpoB gene − 23003 26215 3213 Locate
trnC-GCA gene + 27372 27442 71 Locate
petN gene + 27599 27694 96 Locate
psbM gene − 28716 28820 105 Locate
trnD-GUC gene − 29348 29421 74 Locate
trnY-GUA gene − 29532 29615 84 Locate
trnE-UUC gene − 29688 29760 73 Locate
trnT-GGU gene + 30309 30380 72 Locate
psbD gene + 31535 32596 1062 Locate
psbC gene + 32544 33965 1422 Locate
trnS-UGA gene − 34212 34293 82 Locate
psbZ gene + 34641 34829 189 Locate
trnG-GCC gene + 35094 35164 71 Locate
trnfM-CAU gene − 35336 35409 74 Locate
rps14 gene − 35554 35856 303 Locate
psaB gene − 35979 38183 2205 Locate
psaA gene − 38209 40461 2253 Locate
ycf3 gene − 41126 43098 1973 Locate
trnS-GGA gene + 43935 44021 87 Locate
rps4 gene − 44325 44930 606 Locate
trnT-UGU gene − 45305 45377 73 Locate
trnL-UAA gene + 46055 46628 574 Locate
trnF-GAA gene + 46925 46997 73 Locate
ndhJ gene − 47674 48150 477 Locate
ndhK gene − 48262 48939 678 Locate
ndhC gene − 48991 49353 363 Locate
trnV-UAC gene − 50301 50950 650 Locate
trnM-CAU gene + 51131 51203 73 Locate
atpE gene − 51421 51822 402 Locate
atpB gene − 51819 53315 1497 Locate
rbcL gene + 54096 55556 1461 Locate
accD gene + 56274 57755 1482 Locate
psaI gene + 58452 58562 111 Locate
ycf4 gene + 59014 59568 555 Locate
cemA gene + 60235 60924 690 Locate
petA gene + 61163 62125 963 Locate
psbJ gene − 63114 63236 123 Locate
psbL gene − 63371 63487 117 Locate
psbF gene − 63511 63630 120 Locate
psbE gene − 63645 63896 252 Locate
petL gene + 64809 64904 96 Locate
petG gene + 65081 65194 114 Locate
trnW-CCA gene − 65322 65395 74 Locate
trnP-UGG gene − 65559 65632 74 Locate
psaJ gene + 65926 66060 135 Locate
rpl33 gene + 66518 66718 201 Locate
rps18 gene + 66889 67194 306 Locate
rpl20 gene − 67465 67818 354 Locate
rps12 gene − 68617 68742 126 Locate
clpP gene − 68858 70802 1945 Locate
psbB gene + 71260 72786 1527 Locate
psbT gene + 72975 73076 102 Locate
psbN gene − 73142 73273 132 Locate
psbH gene + 73377 73598 222 Locate
petB gene + 73726 75094 1369 Locate
petD gene + 75283 76472 1190 Locate
rpoA gene − 76655 77662 1008 Locate
rps11 gene − 77734 78150 417 Locate
rpl36 gene − 78261 78374 114 Locate
infA gene − 78478 78711 234 Locate
rps8 gene − 78837 79241 405 Locate
rpl14 gene − 79417 79785 369 Locate
rpl16 gene − 79918 81197 1280 Locate
rps3 gene − 81340 82002 663 Locate
rpl22 gene − 81987 82454 468 Locate
rps19 gene − 82520 82798 279 Locate
rpl2 gene − 82861 84349 1489 Locate
rpl23 gene − 84368 84649 282 Locate
trnI-CAU gene − 84815 84888 74 Locate
ycf2 gene + 84977 91825 6849 Locate
trnL-CAA gene − 92420 92500 81 Locate
ndhB gene − 93077 95230 2154 Locate
rps7 gene − 95549 96016 468 Locate
rps12 gene − 96070 96860 791 Locate
trnV-GAC gene + 98454 98525 72 Locate
rrn16 gene + 98752 100242 1491 Locate
trnI-GAU gene + 100541 101559 1019 Locate
trnA-UGC gene + 101624 102507 884 Locate
rrn23 gene + 102675 105484 2810 Locate
rrn4.5 gene + 105584 105686 103 Locate
rrn5 gene + 105947 106067 121 Locate
trnR-ACG gene + 106311 106384 74 Locate
trnN-GUU gene − 106938 107009 72 Locate
ndhF gene − 108362 110593 2232 Locate
rpl32 gene + 111000 111170 171 Locate
trnL-UAG gene + 111860 111939 80 Locate
ccsA gene + 112027 112998 972 Locate
ndhD gene − 113244 114773 1530 Locate
psaC gene − 114869 115114 246 Locate
ndhE gene − 115365 115670 306 Locate
ndhG gene − 115890 116420 531 Locate
ndhI gene − 116760 117266 507 Locate
ndhA gene − 117347 119474 2128 Locate
ndhH gene − 119476 120687 1212 Locate
rps15 gene − 120757 121029 273 Locate
ycf1 gene − 121444 127053 5610 Locate
trnN-GUU gene + 127271 127342 72 Locate
trnR-ACG gene − 127896 127969 74 Locate
rrn5 gene − 128213 128333 121 Locate
rrn4.5 gene − 128594 128696 103 Locate
rrn23 gene − 128796 131605 2810 Locate
trnA-UGC gene − 131773 132656 884 Locate
trnI-GAU gene − 132721 133739 1019 Locate
rrn16 gene − 134038 135528 1491 Locate
trnV-GAC gene − 135755 135826 72 Locate
rps12 gene + 137420 138210 791 Locate
rps7 gene + 138264 138731 468 Locate
ndhB gene + 139050 141203 2154 Locate
trnL-CAA gene + 141780 141860 81 Locate
ycf2 gene − 142455 149303 6849 Locate
trnI-CAU gene + 149392 149465 74 Locate
rpl23 gene + 149631 149912 282 Locate
rpl2 gene + 149931 151419 1489 Locate
Status Available
Accession PP357161.1
Length 151,524 bp
GC content 38.0%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources