Elsholtzia heterophylla chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP357160.1 · 9–82 bp · −
psbA · PP357160.1 · 419–1,477 bp · −
trnK-UUU · PP357160.1 · 1,707–4,295 bp · −
matK · PP357160.1 · 2,005–3,546 bp · −
rps16 · PP357160.1 · 4,822–5,956 bp · −
trnQ-UUG · PP357160.1 · 6,803–6,874 bp · −
trnS-GCU · PP357160.1 · 8,090–8,177 bp · −
atpA · PP357160.1 · 9,976–11,499 bp · −
atpF · PP357160.1 · 11,600–12,866 bp · −
atpH · PP357160.1 · 13,139–13,384 bp · −
atpI · PP357160.1 · 14,035–14,778 bp · −
rps2 · PP357160.1 · 15,010–15,720 bp · −
rpoC2 · PP357160.1 · 15,963–20,138 bp · −
rpoC1 · PP357160.1 · 20,303–23,114 bp · −
rpoB · PP357160.1 · 23,141–26,353 bp · −
psbM · PP357160.1 · 28,741–28,845 bp · −
trnD-GUC · PP357160.1 · 29,371–29,444 bp · −
trnY-GUA · PP357160.1 · 29,556–29,639 bp · −
trnE-UUC · PP357160.1 · 29,716–29,788 bp · −
trnS-UGA · PP357160.1 · 34,182–34,263 bp · −
trnfM-CAU · PP357160.1 · 35,315–35,388 bp · −
rps14 · PP357160.1 · 35,533–35,835 bp · −
psaB · PP357160.1 · 35,958–38,162 bp · −
psaA · PP357160.1 · 38,188–40,440 bp · −
ycf3 · PP357160.1 · 41,121–43,120 bp · −
rps4 · PP357160.1 · 44,369–44,974 bp · −
trnT-UGU · PP357160.1 · 45,391–45,463 bp · −
ndhJ · PP357160.1 · 47,765–48,241 bp · −
ndhK · PP357160.1 · 48,353–49,030 bp · −
ndhC · PP357160.1 · 49,082–49,444 bp · −
trnV-UAC · PP357160.1 · 50,384–51,033 bp · −
atpE · PP357160.1 · 51,512–51,913 bp · −
atpB · PP357160.1 · 51,910–53,406 bp · −
psbJ · PP357160.1 · 63,209–63,331 bp · −
psbL · PP357160.1 · 63,466–63,582 bp · −
psbF · PP357160.1 · 63,606–63,725 bp · −
psbE · PP357160.1 · 63,740–63,991 bp · −
trnW-CCA · PP357160.1 · 65,420–65,493 bp · −
trnP-UGG · PP357160.1 · 65,658–65,731 bp · −
rpl20 · PP357160.1 · 67,508–67,894 bp · −
rps12 · PP357160.1 · 68,702–68,827 bp · −
rps12 · PP357160.1 · 96,170–96,960 bp · −
clpP · PP357160.1 · 68,943–70,905 bp · −
psbN · PP357160.1 · 73,240–73,371 bp · −
rpoA · PP357160.1 · 76,782–77,783 bp · −
rps11 · PP357160.1 · 77,855–78,259 bp · −
rpl36 · PP357160.1 · 78,370–78,483 bp · −
infA · PP357160.1 · 78,587–78,820 bp · −
rps8 · PP357160.1 · 78,949–79,353 bp · −
rpl14 · PP357160.1 · 79,531–79,899 bp · −
rpl16 · PP357160.1 · 80,028–81,313 bp · −
rps3 · PP357160.1 · 81,456–82,118 bp · −
rpl22 · PP357160.1 · 82,103–82,570 bp · −
rps19 · PP357160.1 · 82,637–82,915 bp · −
rpl2 · PP357160.1 · 82,978–84,466 bp · −
rpl23 · PP357160.1 · 84,485–84,766 bp · −
trnI-CAU · PP357160.1 · 84,932–85,005 bp · −
trnL-CAA · PP357160.1 · 92,519–92,599 bp · −
ndhB · PP357160.1 · 93,177–95,330 bp · −
rps7 · PP357160.1 · 95,649–96,116 bp · −
trnN-GUU · PP357160.1 · 107,044–107,115 bp · −
ndhF · PP357160.1 · 108,468–110,699 bp · −
ndhD · PP357160.1 · 113,360–114,889 bp · −
psaC · PP357160.1 · 114,984–115,229 bp · −
ndhE · PP357160.1 · 115,480–115,785 bp · −
ndhG · PP357160.1 · 116,004–116,534 bp · −
ndhI · PP357160.1 · 116,878–117,384 bp · −
ndhA · PP357160.1 · 117,465–119,541 bp · −
ndhH · PP357160.1 · 119,543–120,781 bp · −
rps15 · PP357160.1 · 120,827–121,099 bp · −
ycf1 · PP357160.1 · 121,498–127,104 bp · −
trnR-ACG · PP357160.1 · 127,948–128,021 bp · −
rrn5 · PP357160.1 · 128,265–128,385 bp · −
rrn4.5 · PP357160.1 · 128,641–128,743 bp · −
rrn23 · PP357160.1 · 128,843–131,652 bp · −
trnA-UGC · PP357160.1 · 131,831–132,714 bp · −
trnI-GAU · PP357160.1 · 132,779–133,797 bp · −
rrn16 · PP357160.1 · 134,096–135,586 bp · −
trnV-GAC · PP357160.1 · 135,813–135,884 bp · −
ycf2 · PP357160.1 · 142,513–149,343 bp · −
psbK · PP357160.1 · 7,252–7,446 bp · +
psbI · PP357160.1 · 7,838–7,948 bp · +
trnG-UCC · PP357160.1 · 8,865–9,614 bp · +
trnR-UCU · PP357160.1 · 9,800–9,871 bp · +
trnC-GCA · PP357160.1 · 27,369–27,439 bp · +
petN · PP357160.1 · 27,588–27,683 bp · +
trnT-GGU · PP357160.1 · 30,335–30,406 bp · +
psbD · PP357160.1 · 31,503–32,564 bp · +
psbC · PP357160.1 · 32,512–33,933 bp · +
psbZ · PP357160.1 · 34,611–34,799 bp · +
trnG-GCC · PP357160.1 · 35,074–35,144 bp · +
trnS-GGA · PP357160.1 · 43,979–44,065 bp · +
trnL-UAA · PP357160.1 · 46,133–46,708 bp · +
trnF-GAA · PP357160.1 · 47,004–47,076 bp · +
trnM-CAU · PP357160.1 · 51,214–51,286 bp · +
rbcL · PP357160.1 · 54,183–55,655 bp · +
accD · PP357160.1 · 56,358–57,839 bp · +
psaI · PP357160.1 · 58,517–58,627 bp · +
ycf4 · PP357160.1 · 59,085–59,639 bp · +
cemA · PP357160.1 · 60,300–60,989 bp · +
petA · PP357160.1 · 61,217–62,179 bp · +
petL · PP357160.1 · 64,908–65,003 bp · +
petG · PP357160.1 · 65,179–65,292 bp · +
psaJ · PP357160.1 · 66,025–66,159 bp · +
rpl33 · PP357160.1 · 66,619–66,819 bp · +
rps18 · PP357160.1 · 66,984–67,289 bp · +
rps12 · PP357160.1 · 137,477–138,267 bp · +
psbB · PP357160.1 · 71,363–72,889 bp · +
psbT · PP357160.1 · 73,073–73,174 bp · +
psbH · PP357160.1 · 73,482–73,703 bp · +
petB · PP357160.1 · 73,831–75,202 bp · +
petD · PP357160.1 · 75,392–76,586 bp · +
ycf2 · PP357160.1 · 85,094–91,924 bp · +
trnV-GAC · PP357160.1 · 98,553–98,624 bp · +
rrn16 · PP357160.1 · 98,851–100,341 bp · +
trnI-GAU · PP357160.1 · 100,640–101,658 bp · +
trnA-UGC · PP357160.1 · 101,723–102,606 bp · +
rrn23 · PP357160.1 · 102,785–105,594 bp · +
rrn4.5 · PP357160.1 · 105,694–105,796 bp · +
rrn5 · PP357160.1 · 106,052–106,172 bp · +
trnR-ACG · PP357160.1 · 106,416–106,489 bp · +
rpl32 · PP357160.1 · 111,107–111,292 bp · +
trnL-UAG · PP357160.1 · 111,967–112,046 bp · +
ccsA · PP357160.1 · 112,133–113,104 bp · +
trnN-GUU · PP357160.1 · 127,322–127,393 bp · +
rps7 · PP357160.1 · 138,321–138,788 bp · +
ndhB · PP357160.1 · 139,107–141,260 bp · +
trnL-CAA · PP357160.1 · 141,838–141,918 bp · +
trnI-CAU · PP357160.1 · 149,432–149,505 bp · +
rpl23 · PP357160.1 · 149,671–149,952 bp · +
rpl2 · PP357160.1 · 149,971–151,459 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Elsholtzia heterophylla
ANNOTATED PLASTOME
PP357160.1
151,510 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37878 75755 113632 151510 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 9 82 74 Locate
psbA gene − 419 1477 1059 Locate
trnK-UUU gene − 1707 4295 2589 Locate
matK gene − 2005 3546 1542 Locate
rps16 gene − 4822 5956 1135 Locate
trnQ-UUG gene − 6803 6874 72 Locate
psbK gene + 7252 7446 195 Locate
psbI gene + 7838 7948 111 Locate
trnS-GCU gene − 8090 8177 88 Locate
trnG-UCC gene + 8865 9614 750 Locate
trnR-UCU gene + 9800 9871 72 Locate
atpA gene − 9976 11499 1524 Locate
atpF gene − 11600 12866 1267 Locate
atpH gene − 13139 13384 246 Locate
atpI gene − 14035 14778 744 Locate
rps2 gene − 15010 15720 711 Locate
rpoC2 gene − 15963 20138 4176 Locate
rpoC1 gene − 20303 23114 2812 Locate
rpoB gene − 23141 26353 3213 Locate
trnC-GCA gene + 27369 27439 71 Locate
petN gene + 27588 27683 96 Locate
psbM gene − 28741 28845 105 Locate
trnD-GUC gene − 29371 29444 74 Locate
trnY-GUA gene − 29556 29639 84 Locate
trnE-UUC gene − 29716 29788 73 Locate
trnT-GGU gene + 30335 30406 72 Locate
psbD gene + 31503 32564 1062 Locate
psbC gene + 32512 33933 1422 Locate
trnS-UGA gene − 34182 34263 82 Locate
psbZ gene + 34611 34799 189 Locate
trnG-GCC gene + 35074 35144 71 Locate
trnfM-CAU gene − 35315 35388 74 Locate
rps14 gene − 35533 35835 303 Locate
psaB gene − 35958 38162 2205 Locate
psaA gene − 38188 40440 2253 Locate
ycf3 gene − 41121 43120 2000 Locate
trnS-GGA gene + 43979 44065 87 Locate
rps4 gene − 44369 44974 606 Locate
trnT-UGU gene − 45391 45463 73 Locate
trnL-UAA gene + 46133 46708 576 Locate
trnF-GAA gene + 47004 47076 73 Locate
ndhJ gene − 47765 48241 477 Locate
ndhK gene − 48353 49030 678 Locate
ndhC gene − 49082 49444 363 Locate
trnV-UAC gene − 50384 51033 650 Locate
trnM-CAU gene + 51214 51286 73 Locate
atpE gene − 51512 51913 402 Locate
atpB gene − 51910 53406 1497 Locate
rbcL gene + 54183 55655 1473 Locate
accD gene + 56358 57839 1482 Locate
psaI gene + 58517 58627 111 Locate
ycf4 gene + 59085 59639 555 Locate
cemA gene + 60300 60989 690 Locate
petA gene + 61217 62179 963 Locate
psbJ gene − 63209 63331 123 Locate
psbL gene − 63466 63582 117 Locate
psbF gene − 63606 63725 120 Locate
psbE gene − 63740 63991 252 Locate
petL gene + 64908 65003 96 Locate
petG gene + 65179 65292 114 Locate
trnW-CCA gene − 65420 65493 74 Locate
trnP-UGG gene − 65658 65731 74 Locate
psaJ gene + 66025 66159 135 Locate
rpl33 gene + 66619 66819 201 Locate
rps18 gene + 66984 67289 306 Locate
rpl20 gene − 67508 67894 387 Locate
rps12 gene − 68702 68827 126 Locate
clpP gene − 68943 70905 1963 Locate
psbB gene + 71363 72889 1527 Locate
psbT gene + 73073 73174 102 Locate
psbN gene − 73240 73371 132 Locate
psbH gene + 73482 73703 222 Locate
petB gene + 73831 75202 1372 Locate
petD gene + 75392 76586 1195 Locate
rpoA gene − 76782 77783 1002 Locate
rps11 gene − 77855 78259 405 Locate
rpl36 gene − 78370 78483 114 Locate
infA gene − 78587 78820 234 Locate
rps8 gene − 78949 79353 405 Locate
rpl14 gene − 79531 79899 369 Locate
rpl16 gene − 80028 81313 1286 Locate
rps3 gene − 81456 82118 663 Locate
rpl22 gene − 82103 82570 468 Locate
rps19 gene − 82637 82915 279 Locate
rpl2 gene − 82978 84466 1489 Locate
rpl23 gene − 84485 84766 282 Locate
trnI-CAU gene − 84932 85005 74 Locate
ycf2 gene + 85094 91924 6831 Locate
trnL-CAA gene − 92519 92599 81 Locate
ndhB gene − 93177 95330 2154 Locate
rps7 gene − 95649 96116 468 Locate
rps12 gene − 96170 96960 791 Locate
trnV-GAC gene + 98553 98624 72 Locate
rrn16 gene + 98851 100341 1491 Locate
trnI-GAU gene + 100640 101658 1019 Locate
trnA-UGC gene + 101723 102606 884 Locate
rrn23 gene + 102785 105594 2810 Locate
rrn4.5 gene + 105694 105796 103 Locate
rrn5 gene + 106052 106172 121 Locate
trnR-ACG gene + 106416 106489 74 Locate
trnN-GUU gene − 107044 107115 72 Locate
ndhF gene − 108468 110699 2232 Locate
rpl32 gene + 111107 111292 186 Locate
trnL-UAG gene + 111967 112046 80 Locate
ccsA gene + 112133 113104 972 Locate
ndhD gene − 113360 114889 1530 Locate
psaC gene − 114984 115229 246 Locate
ndhE gene − 115480 115785 306 Locate
ndhG gene − 116004 116534 531 Locate
ndhI gene − 116878 117384 507 Locate
ndhA gene − 117465 119541 2077 Locate
ndhH gene − 119543 120781 1239 Locate
rps15 gene − 120827 121099 273 Locate
ycf1 gene − 121498 127104 5607 Locate
trnN-GUU gene + 127322 127393 72 Locate
trnR-ACG gene − 127948 128021 74 Locate
rrn5 gene − 128265 128385 121 Locate
rrn4.5 gene − 128641 128743 103 Locate
rrn23 gene − 128843 131652 2810 Locate
trnA-UGC gene − 131831 132714 884 Locate
trnI-GAU gene − 132779 133797 1019 Locate
rrn16 gene − 134096 135586 1491 Locate
trnV-GAC gene − 135813 135884 72 Locate
rps12 gene + 137477 138267 791 Locate
rps7 gene + 138321 138788 468 Locate
ndhB gene + 139107 141260 2154 Locate
trnL-CAA gene + 141838 141918 81 Locate
ycf2 gene − 142513 149343 6831 Locate
trnI-CAU gene + 149432 149505 74 Locate
rpl23 gene + 149671 149952 282 Locate
rpl2 gene + 149971 151459 1489 Locate
Status Available
Accession PP357160.1
Length 151,510 bp
GC content 37.9%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources