Elsholtzia kachinensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP357165.1 · 11–84 bp · −
psbA · PP357165.1 · 408–1,466 bp · −
trnK-UUU · PP357165.1 · 1,695–4,264 bp · −
matK · PP357165.1 · 2,003–3,544 bp · −
rps16 · PP357165.1 · 4,780–5,925 bp · −
trnQ-UUG · PP357165.1 · 6,625–6,696 bp · −
trnS-GCU · PP357165.1 · 7,889–7,976 bp · −
atpA · PP357165.1 · 9,786–11,309 bp · −
atpF · PP357165.1 · 11,414–12,671 bp · −
atpH · PP357165.1 · 12,944–13,189 bp · −
atpI · PP357165.1 · 13,808–14,551 bp · −
rps2 · PP357165.1 · 14,791–15,501 bp · −
rpoC2 · PP357165.1 · 15,789–19,919 bp · −
rpoC1 · PP357165.1 · 20,084–22,895 bp · −
rpoB · PP357165.1 · 22,922–26,134 bp · −
psbM · PP357165.1 · 28,673–28,777 bp · −
trnD-GUC · PP357165.1 · 29,136–29,209 bp · −
trnY-GUA · PP357165.1 · 29,319–29,402 bp · −
trnE-UUC · PP357165.1 · 29,475–29,547 bp · −
trnS-UGA · PP357165.1 · 33,952–34,033 bp · −
trnfM-CAU · PP357165.1 · 35,123–35,196 bp · −
rps14 · PP357165.1 · 35,341–35,643 bp · −
psaB · PP357165.1 · 35,766–37,970 bp · −
psaA · PP357165.1 · 37,996–40,248 bp · −
ycf3 · PP357165.1 · 40,911–42,878 bp · −
rps4 · PP357165.1 · 44,132–44,737 bp · −
trnT-UGU · PP357165.1 · 45,119–45,191 bp · −
ndhJ · PP357165.1 · 47,492–47,968 bp · −
ndhK · PP357165.1 · 48,080–48,757 bp · −
ndhC · PP357165.1 · 48,810–49,172 bp · −
trnV-UAC · PP357165.1 · 50,115–50,763 bp · −
atpE · PP357165.1 · 51,234–51,635 bp · −
atpB · PP357165.1 · 51,632–53,128 bp · −
psbJ · PP357165.1 · 62,917–63,039 bp · −
psbL · PP357165.1 · 63,174–63,290 bp · −
psbF · PP357165.1 · 63,314–63,433 bp · −
psbE · PP357165.1 · 63,448–63,699 bp · −
trnW-CCA · PP357165.1 · 65,129–65,202 bp · −
trnP-UGG · PP357165.1 · 65,342–65,415 bp · −
rpl20 · PP357165.1 · 67,203–67,589 bp · −
rps12 · PP357165.1 · 68,400–68,525 bp · −
rps12 · PP357165.1 · 95,864–96,654 bp · −
clpP · PP357165.1 · 68,641–70,597 bp · −
psbN · PP357165.1 · 72,940–73,071 bp · −
rpoA · PP357165.1 · 76,463–77,470 bp · −
rps11 · PP357165.1 · 77,542–77,958 bp · −
rpl36 · PP357165.1 · 78,069–78,182 bp · −
infA · PP357165.1 · 78,286–78,519 bp · −
rps8 · PP357165.1 · 78,645–79,049 bp · −
rpl14 · PP357165.1 · 79,210–79,578 bp · −
rpl16 · PP357165.1 · 79,711–80,987 bp · −
rps3 · PP357165.1 · 81,130–81,792 bp · −
rpl22 · PP357165.1 · 81,777–82,244 bp · −
rps19 · PP357165.1 · 82,311–82,589 bp · −
rpl2 · PP357165.1 · 82,649–84,138 bp · −
rpl23 · PP357165.1 · 84,157–84,438 bp · −
trnI-CAU · PP357165.1 · 84,604–84,677 bp · −
trnL-CAA · PP357165.1 · 92,214–92,294 bp · −
ndhB · PP357165.1 · 92,871–95,024 bp · −
rps7 · PP357165.1 · 95,343–95,810 bp · −
trnN-GUU · PP357165.1 · 106,716–106,787 bp · −
ndhF · PP357165.1 · 108,140–110,371 bp · −
ndhD · PP357165.1 · 112,997–114,526 bp · −
psaC · PP357165.1 · 114,619–114,864 bp · −
ndhE · PP357165.1 · 115,115–115,420 bp · −
ndhG · PP357165.1 · 115,643–116,173 bp · −
ndhI · PP357165.1 · 116,503–117,009 bp · −
ndhA · PP357165.1 · 117,090–119,196 bp · −
ndhH · PP357165.1 · 119,198–120,409 bp · −
rps15 · PP357165.1 · 120,479–120,751 bp · −
ycf1 · PP357165.1 · 121,171–126,708 bp · −
trnR-ACG · PP357165.1 · 127,551–127,624 bp · −
rrn5 · PP357165.1 · 127,868–127,988 bp · −
rrn4.5 · PP357165.1 · 128,244–128,346 bp · −
rrn23 · PP357165.1 · 128,446–131,255 bp · −
trnA-UGC · PP357165.1 · 131,415–132,298 bp · −
trnI-GAU · PP357165.1 · 132,363–133,380 bp · −
rrn16 · PP357165.1 · 133,679–135,169 bp · −
trnV-GAC · PP357165.1 · 135,396–135,467 bp · −
ycf2 · PP357165.1 · 142,095–148,943 bp · −
psbK · PP357165.1 · 7,055–7,249 bp · +
psbI · PP357165.1 · 7,637–7,747 bp · +
trnG-UCC · PP357165.1 · 8,675–9,422 bp · +
trnR-UCU · PP357165.1 · 9,610–9,681 bp · +
trnC-GCA · PP357165.1 · 27,305–27,375 bp · +
petN · PP357165.1 · 27,525–27,620 bp · +
trnT-GGU · PP357165.1 · 30,090–30,161 bp · +
psbD · PP357165.1 · 31,266–32,327 bp · +
psbC · PP357165.1 · 32,275–33,696 bp · +
psbZ · PP357165.1 · 34,419–34,607 bp · +
trnG-GCC · PP357165.1 · 34,878–34,948 bp · +
trnS-GGA · PP357165.1 · 43,745–43,831 bp · +
trnL-UAA · PP357165.1 · 45,883–46,456 bp · +
trnF-GAA · PP357165.1 · 46,747–46,819 bp · +
trnM-CAU · PP357165.1 · 50,944–51,016 bp · +
rbcL · PP357165.1 · 53,904–55,364 bp · +
accD · PP357165.1 · 56,084–57,577 bp · +
psaI · PP357165.1 · 58,258–58,368 bp · +
ycf4 · PP357165.1 · 58,822–59,376 bp · +
cemA · PP357165.1 · 60,046–60,735 bp · +
petA · PP357165.1 · 60,974–61,936 bp · +
petL · PP357165.1 · 64,617–64,712 bp · +
petG · PP357165.1 · 64,888–65,001 bp · +
psaJ · PP357165.1 · 65,712–65,846 bp · +
rpl33 · PP357165.1 · 66,306–66,506 bp · +
rps18 · PP357165.1 · 66,681–66,986 bp · +
rps12 · PP357165.1 · 137,059–137,849 bp · +
psbB · PP357165.1 · 71,064–72,590 bp · +
psbT · PP357165.1 · 72,773–72,874 bp · +
psbH · PP357165.1 · 73,175–73,396 bp · +
petB · PP357165.1 · 73,524–74,885 bp · +
petD · PP357165.1 · 75,075–76,274 bp · +
ycf2 · PP357165.1 · 84,770–91,618 bp · +
trnV-GAC · PP357165.1 · 98,246–98,317 bp · +
rrn16 · PP357165.1 · 98,544–100,034 bp · +
trnI-GAU · PP357165.1 · 100,333–101,350 bp · +
trnA-UGC · PP357165.1 · 101,415–102,298 bp · +
rrn23 · PP357165.1 · 102,458–105,267 bp · +
rrn4.5 · PP357165.1 · 105,367–105,469 bp · +
rrn5 · PP357165.1 · 105,725–105,845 bp · +
trnR-ACG · PP357165.1 · 106,089–106,162 bp · +
rpl32 · PP357165.1 · 110,792–110,962 bp · +
trnL-UAG · PP357165.1 · 111,617–111,696 bp · +
ccsA · PP357165.1 · 111,784–112,740 bp · +
trnN-GUU · PP357165.1 · 126,926–126,997 bp · +
rps7 · PP357165.1 · 137,903–138,370 bp · +
ndhB · PP357165.1 · 138,689–140,842 bp · +
trnL-CAA · PP357165.1 · 141,419–141,499 bp · +
trnI-CAU · PP357165.1 · 149,036–149,109 bp · +
rpl23 · PP357165.1 · 149,275–149,556 bp · +
rpl2 · PP357165.1 · 149,575–151,064 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Elsholtzia kachinensis
ANNOTATED PLASTOME
PP357165.1
151,166 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37792 75583 113374 151166 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 408 1466 1059 Locate
trnK-UUU gene − 1695 4264 2570 Locate
matK gene − 2003 3544 1542 Locate
rps16 gene − 4780 5925 1146 Locate
trnQ-UUG gene − 6625 6696 72 Locate
psbK gene + 7055 7249 195 Locate
psbI gene + 7637 7747 111 Locate
trnS-GCU gene − 7889 7976 88 Locate
trnG-UCC gene + 8675 9422 748 Locate
trnR-UCU gene + 9610 9681 72 Locate
atpA gene − 9786 11309 1524 Locate
atpF gene − 11414 12671 1258 Locate
atpH gene − 12944 13189 246 Locate
atpI gene − 13808 14551 744 Locate
rps2 gene − 14791 15501 711 Locate
rpoC2 gene − 15789 19919 4131 Locate
rpoC1 gene − 20084 22895 2812 Locate
rpoB gene − 22922 26134 3213 Locate
trnC-GCA gene + 27305 27375 71 Locate
petN gene + 27525 27620 96 Locate
psbM gene − 28673 28777 105 Locate
trnD-GUC gene − 29136 29209 74 Locate
trnY-GUA gene − 29319 29402 84 Locate
trnE-UUC gene − 29475 29547 73 Locate
trnT-GGU gene + 30090 30161 72 Locate
psbD gene + 31266 32327 1062 Locate
psbC gene + 32275 33696 1422 Locate
trnS-UGA gene − 33952 34033 82 Locate
psbZ gene + 34419 34607 189 Locate
trnG-GCC gene + 34878 34948 71 Locate
trnfM-CAU gene − 35123 35196 74 Locate
rps14 gene − 35341 35643 303 Locate
psaB gene − 35766 37970 2205 Locate
psaA gene − 37996 40248 2253 Locate
ycf3 gene − 40911 42878 1968 Locate
trnS-GGA gene + 43745 43831 87 Locate
rps4 gene − 44132 44737 606 Locate
trnT-UGU gene − 45119 45191 73 Locate
trnL-UAA gene + 45883 46456 574 Locate
trnF-GAA gene + 46747 46819 73 Locate
ndhJ gene − 47492 47968 477 Locate
ndhK gene − 48080 48757 678 Locate
ndhC gene − 48810 49172 363 Locate
trnV-UAC gene − 50115 50763 649 Locate
trnM-CAU gene + 50944 51016 73 Locate
atpE gene − 51234 51635 402 Locate
atpB gene − 51632 53128 1497 Locate
rbcL gene + 53904 55364 1461 Locate
accD gene + 56084 57577 1494 Locate
psaI gene + 58258 58368 111 Locate
ycf4 gene + 58822 59376 555 Locate
cemA gene + 60046 60735 690 Locate
petA gene + 60974 61936 963 Locate
psbJ gene − 62917 63039 123 Locate
psbL gene − 63174 63290 117 Locate
psbF gene − 63314 63433 120 Locate
psbE gene − 63448 63699 252 Locate
petL gene + 64617 64712 96 Locate
petG gene + 64888 65001 114 Locate
trnW-CCA gene − 65129 65202 74 Locate
trnP-UGG gene − 65342 65415 74 Locate
psaJ gene + 65712 65846 135 Locate
rpl33 gene + 66306 66506 201 Locate
rps18 gene + 66681 66986 306 Locate
rpl20 gene − 67203 67589 387 Locate
rps12 gene − 68400 68525 126 Locate
clpP gene − 68641 70597 1957 Locate
psbB gene + 71064 72590 1527 Locate
psbT gene + 72773 72874 102 Locate
psbN gene − 72940 73071 132 Locate
psbH gene + 73175 73396 222 Locate
petB gene + 73524 74885 1362 Locate
petD gene + 75075 76274 1200 Locate
rpoA gene − 76463 77470 1008 Locate
rps11 gene − 77542 77958 417 Locate
rpl36 gene − 78069 78182 114 Locate
infA gene − 78286 78519 234 Locate
rps8 gene − 78645 79049 405 Locate
rpl14 gene − 79210 79578 369 Locate
rpl16 gene − 79711 80987 1277 Locate
rps3 gene − 81130 81792 663 Locate
rpl22 gene − 81777 82244 468 Locate
rps19 gene − 82311 82589 279 Locate
rpl2 gene − 82649 84138 1490 Locate
rpl23 gene − 84157 84438 282 Locate
trnI-CAU gene − 84604 84677 74 Locate
ycf2 gene + 84770 91618 6849 Locate
trnL-CAA gene − 92214 92294 81 Locate
ndhB gene − 92871 95024 2154 Locate
rps7 gene − 95343 95810 468 Locate
rps12 gene − 95864 96654 791 Locate
trnV-GAC gene + 98246 98317 72 Locate
rrn16 gene + 98544 100034 1491 Locate
trnI-GAU gene + 100333 101350 1018 Locate
trnA-UGC gene + 101415 102298 884 Locate
rrn23 gene + 102458 105267 2810 Locate
rrn4.5 gene + 105367 105469 103 Locate
rrn5 gene + 105725 105845 121 Locate
trnR-ACG gene + 106089 106162 74 Locate
trnN-GUU gene − 106716 106787 72 Locate
ndhF gene − 108140 110371 2232 Locate
rpl32 gene + 110792 110962 171 Locate
trnL-UAG gene + 111617 111696 80 Locate
ccsA gene + 111784 112740 957 Locate
ndhD gene − 112997 114526 1530 Locate
psaC gene − 114619 114864 246 Locate
ndhE gene − 115115 115420 306 Locate
ndhG gene − 115643 116173 531 Locate
ndhI gene − 116503 117009 507 Locate
ndhA gene − 117090 119196 2107 Locate
ndhH gene − 119198 120409 1212 Locate
rps15 gene − 120479 120751 273 Locate
ycf1 gene − 121171 126708 5538 Locate
trnN-GUU gene + 126926 126997 72 Locate
trnR-ACG gene − 127551 127624 74 Locate
rrn5 gene − 127868 127988 121 Locate
rrn4.5 gene − 128244 128346 103 Locate
rrn23 gene − 128446 131255 2810 Locate
trnA-UGC gene − 131415 132298 884 Locate
trnI-GAU gene − 132363 133380 1018 Locate
rrn16 gene − 133679 135169 1491 Locate
trnV-GAC gene − 135396 135467 72 Locate
rps12 gene + 137059 137849 791 Locate
rps7 gene + 137903 138370 468 Locate
ndhB gene + 138689 140842 2154 Locate
trnL-CAA gene + 141419 141499 81 Locate
ycf2 gene − 142095 148943 6849 Locate
trnI-CAU gene + 149036 149109 74 Locate
rpl23 gene + 149275 149556 282 Locate
rpl2 gene + 149575 151064 1490 Locate
Status Available
Accession PP357165.1
Length 151,166 bp
GC content 37.9%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources