Elsholtzia pilosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP357163.1 · 12–85 bp · −
psbA · PP357163.1 · 416–1,474 bp · −
trnK-UUU · PP357163.1 · 1,702–4,268 bp · −
matK · PP357163.1 · 1,975–3,534 bp · −
rps16 · PP357163.1 · 4,798–5,927 bp · −
trnQ-UUG · PP357163.1 · 6,832–6,903 bp · −
trnS-GCU · PP357163.1 · 8,120–8,207 bp · −
atpA · PP357163.1 · 10,028–11,551 bp · −
atpF · PP357163.1 · 11,654–12,903 bp · −
atpH · PP357163.1 · 13,177–13,422 bp · −
atpI · PP357163.1 · 14,428–15,171 bp · −
rps2 · PP357163.1 · 15,405–16,115 bp · −
rpoC2 · PP357163.1 · 16,346–20,527 bp · −
rpoC1 · PP357163.1 · 20,692–23,505 bp · −
rpoB · PP357163.1 · 23,532–26,744 bp · −
psbM · PP357163.1 · 29,244–29,348 bp · −
trnD-GUC · PP357163.1 · 29,716–29,789 bp · −
trnY-GUA · PP357163.1 · 29,900–29,983 bp · −
trnE-UUC · PP357163.1 · 30,062–30,134 bp · −
trnS-UGA · PP357163.1 · 34,573–34,654 bp · −
trnfM-CAU · PP357163.1 · 35,696–35,769 bp · −
rps14 · PP357163.1 · 35,914–36,216 bp · −
psaB · PP357163.1 · 36,338–38,542 bp · −
psaA · PP357163.1 · 38,568–40,820 bp · −
ycf3 · PP357163.1 · 41,490–43,459 bp · −
rps4 · PP357163.1 · 44,698–45,303 bp · −
trnT-UGU · PP357163.1 · 45,705–45,777 bp · −
ndhJ · PP357163.1 · 48,112–48,588 bp · −
ndhK · PP357163.1 · 48,700–49,377 bp · −
ndhC · PP357163.1 · 49,429–49,791 bp · −
trnV-UAC · PP357163.1 · 50,752–51,409 bp · −
atpE · PP357163.1 · 51,878–52,279 bp · −
atpB · PP357163.1 · 52,276–53,772 bp · −
psbJ · PP357163.1 · 63,490–63,612 bp · −
psbL · PP357163.1 · 63,747–63,863 bp · −
psbF · PP357163.1 · 63,887–64,006 bp · −
psbE · PP357163.1 · 64,021–64,272 bp · −
trnW-CCA · PP357163.1 · 65,684–65,757 bp · −
trnP-UGG · PP357163.1 · 65,927–66,000 bp · −
rpl20 · PP357163.1 · 67,758–68,144 bp · −
rps12 · PP357163.1 · 68,946–69,071 bp · −
rps12 · PP357163.1 · 96,399–97,189 bp · −
clpP · PP357163.1 · 69,188–71,134 bp · −
psbN · PP357163.1 · 73,470–73,601 bp · −
rpoA · PP357163.1 · 76,997–78,004 bp · −
rps11 · PP357163.1 · 78,076–78,492 bp · −
rpl36 · PP357163.1 · 78,602–78,715 bp · −
infA · PP357163.1 · 78,819–79,052 bp · −
rps8 · PP357163.1 · 79,177–79,581 bp · −
rpl14 · PP357163.1 · 79,757–80,125 bp · −
rpl16 · PP357163.1 · 80,258–81,530 bp · −
rps3 · PP357163.1 · 81,673–82,335 bp · −
rpl22 · PP357163.1 · 82,320–82,787 bp · −
rps19 · PP357163.1 · 82,853–83,131 bp · −
rpl2 · PP357163.1 · 83,192–84,680 bp · −
rpl23 · PP357163.1 · 84,699–84,980 bp · −
trnI-CAU · PP357163.1 · 85,146–85,219 bp · −
trnL-CAA · PP357163.1 · 92,749–92,829 bp · −
ndhB · PP357163.1 · 93,406–95,559 bp · −
rps7 · PP357163.1 · 95,878–96,345 bp · −
trnN-GUU · PP357163.1 · 107,280–107,351 bp · −
ndhF · PP357163.1 · 108,704–110,935 bp · −
ndhD · PP357163.1 · 113,573–115,102 bp · −
psaC · PP357163.1 · 115,199–115,444 bp · −
ndhE · PP357163.1 · 115,697–116,002 bp · −
ndhG · PP357163.1 · 116,229–116,759 bp · −
ndhI · PP357163.1 · 117,104–117,610 bp · −
ndhA · PP357163.1 · 117,692–119,807 bp · −
ndhH · PP357163.1 · 119,809–121,020 bp · −
rps15 · PP357163.1 · 121,090–121,362 bp · −
ycf1 · PP357163.1 · 121,794–127,448 bp · −
trnR-ACG · PP357163.1 · 128,298–128,371 bp · −
rrn5 · PP357163.1 · 128,615–128,735 bp · −
rrn4.5 · PP357163.1 · 128,996–129,098 bp · −
rrn23 · PP357163.1 · 129,198–132,007 bp · −
trnA-UGC · PP357163.1 · 132,167–133,050 bp · −
trnI-GAU · PP357163.1 · 133,115–134,133 bp · −
rrn16 · PP357163.1 · 134,436–135,926 bp · −
trnV-GAC · PP357163.1 · 136,153–136,224 bp · −
ycf2 · PP357163.1 · 142,852–149,709 bp · −
psbK · PP357163.1 · 7,282–7,476 bp · +
psbI · PP357163.1 · 7,863–7,973 bp · +
trnG-UCC · PP357163.1 · 8,887–9,639 bp · +
trnR-UCU · PP357163.1 · 9,852–9,923 bp · +
trnC-GCA · PP357163.1 · 27,908–27,978 bp · +
petN · PP357163.1 · 28,135–28,230 bp · +
trnT-GGU · PP357163.1 · 30,675–30,746 bp · +
psbD · PP357163.1 · 31,895–32,956 bp · +
psbC · PP357163.1 · 32,904–34,325 bp · +
psbZ · PP357163.1 · 34,998–35,186 bp · +
trnG-GCC · PP357163.1 · 35,455–35,525 bp · +
trnS-GGA · PP357163.1 · 44,308–44,394 bp · +
trnL-UAA · PP357163.1 · 46,497–47,065 bp · +
trnF-GAA · PP357163.1 · 47,360–47,432 bp · +
trnM-CAU · PP357163.1 · 51,590–51,662 bp · +
rbcL · PP357163.1 · 54,569–56,029 bp · +
accD · PP357163.1 · 56,696–58,177 bp · +
psaI · PP357163.1 · 58,882–58,992 bp · +
ycf4 · PP357163.1 · 59,456–60,010 bp · +
cemA · PP357163.1 · 60,670–61,359 bp · +
petA · PP357163.1 · 61,616–62,578 bp · +
petL · PP357163.1 · 65,173–65,268 bp · +
petG · PP357163.1 · 65,444–65,557 bp · +
psaJ · PP357163.1 · 66,283–66,417 bp · +
rpl33 · PP357163.1 · 66,851–67,051 bp · +
rps18 · PP357163.1 · 67,220–67,525 bp · +
rps12 · PP357163.1 · 137,828–138,618 bp · +
psbB · PP357163.1 · 71,592–73,118 bp · +
psbT · PP357163.1 · 73,303–73,404 bp · +
psbH · PP357163.1 · 73,707–73,928 bp · +
petB · PP357163.1 · 74,056–75,431 bp · +
petD · PP357163.1 · 75,620–76,814 bp · +
ycf2 · PP357163.1 · 85,308–92,165 bp · +
trnV-GAC · PP357163.1 · 98,793–98,864 bp · +
rrn16 · PP357163.1 · 99,091–100,581 bp · +
trnI-GAU · PP357163.1 · 100,884–101,902 bp · +
trnA-UGC · PP357163.1 · 101,967–102,850 bp · +
rrn23 · PP357163.1 · 103,010–105,819 bp · +
rrn4.5 · PP357163.1 · 105,919–106,021 bp · +
rrn5 · PP357163.1 · 106,282–106,402 bp · +
trnR-ACG · PP357163.1 · 106,646–106,719 bp · +
rpl32 · PP357163.1 · 111,331–111,501 bp · +
trnL-UAG · PP357163.1 · 112,190–112,269 bp · +
ccsA · PP357163.1 · 112,357–113,328 bp · +
trnN-GUU · PP357163.1 · 127,666–127,737 bp · +
rps7 · PP357163.1 · 138,672–139,139 bp · +
ndhB · PP357163.1 · 139,458–141,611 bp · +
trnL-CAA · PP357163.1 · 142,188–142,268 bp · +
trnI-CAU · PP357163.1 · 149,798–149,871 bp · +
rpl23 · PP357163.1 · 150,037–150,318 bp · +
rpl2 · PP357163.1 · 150,337–151,825 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Elsholtzia pilosa
ANNOTATED PLASTOME
PP357163.1
151,928 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37982 75964 113946 151928 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 85 74 Locate
psbA gene − 416 1474 1059 Locate
trnK-UUU gene − 1702 4268 2567 Locate
matK gene − 1975 3534 1560 Locate
rps16 gene − 4798 5927 1130 Locate
trnQ-UUG gene − 6832 6903 72 Locate
psbK gene + 7282 7476 195 Locate
psbI gene + 7863 7973 111 Locate
trnS-GCU gene − 8120 8207 88 Locate
trnG-UCC gene + 8887 9639 753 Locate
trnR-UCU gene + 9852 9923 72 Locate
atpA gene − 10028 11551 1524 Locate
atpF gene − 11654 12903 1250 Locate
atpH gene − 13177 13422 246 Locate
atpI gene − 14428 15171 744 Locate
rps2 gene − 15405 16115 711 Locate
rpoC2 gene − 16346 20527 4182 Locate
rpoC1 gene − 20692 23505 2814 Locate
rpoB gene − 23532 26744 3213 Locate
trnC-GCA gene + 27908 27978 71 Locate
petN gene + 28135 28230 96 Locate
psbM gene − 29244 29348 105 Locate
trnD-GUC gene − 29716 29789 74 Locate
trnY-GUA gene − 29900 29983 84 Locate
trnE-UUC gene − 30062 30134 73 Locate
trnT-GGU gene + 30675 30746 72 Locate
psbD gene + 31895 32956 1062 Locate
psbC gene + 32904 34325 1422 Locate
trnS-UGA gene − 34573 34654 82 Locate
psbZ gene + 34998 35186 189 Locate
trnG-GCC gene + 35455 35525 71 Locate
trnfM-CAU gene − 35696 35769 74 Locate
rps14 gene − 35914 36216 303 Locate
psaB gene − 36338 38542 2205 Locate
psaA gene − 38568 40820 2253 Locate
ycf3 gene − 41490 43459 1970 Locate
trnS-GGA gene + 44308 44394 87 Locate
rps4 gene − 44698 45303 606 Locate
trnT-UGU gene − 45705 45777 73 Locate
trnL-UAA gene + 46497 47065 569 Locate
trnF-GAA gene + 47360 47432 73 Locate
ndhJ gene − 48112 48588 477 Locate
ndhK gene − 48700 49377 678 Locate
ndhC gene − 49429 49791 363 Locate
trnV-UAC gene − 50752 51409 658 Locate
trnM-CAU gene + 51590 51662 73 Locate
atpE gene − 51878 52279 402 Locate
atpB gene − 52276 53772 1497 Locate
rbcL gene + 54569 56029 1461 Locate
accD gene + 56696 58177 1482 Locate
psaI gene + 58882 58992 111 Locate
ycf4 gene + 59456 60010 555 Locate
cemA gene + 60670 61359 690 Locate
petA gene + 61616 62578 963 Locate
psbJ gene − 63490 63612 123 Locate
psbL gene − 63747 63863 117 Locate
psbF gene − 63887 64006 120 Locate
psbE gene − 64021 64272 252 Locate
petL gene + 65173 65268 96 Locate
petG gene + 65444 65557 114 Locate
trnW-CCA gene − 65684 65757 74 Locate
trnP-UGG gene − 65927 66000 74 Locate
psaJ gene + 66283 66417 135 Locate
rpl33 gene + 66851 67051 201 Locate
rps18 gene + 67220 67525 306 Locate
rpl20 gene − 67758 68144 387 Locate
rps12 gene − 68946 69071 126 Locate
clpP gene − 69188 71134 1947 Locate
psbB gene + 71592 73118 1527 Locate
psbT gene + 73303 73404 102 Locate
psbN gene − 73470 73601 132 Locate
psbH gene + 73707 73928 222 Locate
petB gene + 74056 75431 1376 Locate
petD gene + 75620 76814 1195 Locate
rpoA gene − 76997 78004 1008 Locate
rps11 gene − 78076 78492 417 Locate
rpl36 gene − 78602 78715 114 Locate
infA gene − 78819 79052 234 Locate
rps8 gene − 79177 79581 405 Locate
rpl14 gene − 79757 80125 369 Locate
rpl16 gene − 80258 81530 1273 Locate
rps3 gene − 81673 82335 663 Locate
rpl22 gene − 82320 82787 468 Locate
rps19 gene − 82853 83131 279 Locate
rpl2 gene − 83192 84680 1489 Locate
rpl23 gene − 84699 84980 282 Locate
trnI-CAU gene − 85146 85219 74 Locate
ycf2 gene + 85308 92165 6858 Locate
trnL-CAA gene − 92749 92829 81 Locate
ndhB gene − 93406 95559 2154 Locate
rps7 gene − 95878 96345 468 Locate
rps12 gene − 96399 97189 791 Locate
trnV-GAC gene + 98793 98864 72 Locate
rrn16 gene + 99091 100581 1491 Locate
trnI-GAU gene + 100884 101902 1019 Locate
trnA-UGC gene + 101967 102850 884 Locate
rrn23 gene + 103010 105819 2810 Locate
rrn4.5 gene + 105919 106021 103 Locate
rrn5 gene + 106282 106402 121 Locate
trnR-ACG gene + 106646 106719 74 Locate
trnN-GUU gene − 107280 107351 72 Locate
ndhF gene − 108704 110935 2232 Locate
rpl32 gene + 111331 111501 171 Locate
trnL-UAG gene + 112190 112269 80 Locate
ccsA gene + 112357 113328 972 Locate
ndhD gene − 113573 115102 1530 Locate
psaC gene − 115199 115444 246 Locate
ndhE gene − 115697 116002 306 Locate
ndhG gene − 116229 116759 531 Locate
ndhI gene − 117104 117610 507 Locate
ndhA gene − 117692 119807 2116 Locate
ndhH gene − 119809 121020 1212 Locate
rps15 gene − 121090 121362 273 Locate
ycf1 gene − 121794 127448 5655 Locate
trnN-GUU gene + 127666 127737 72 Locate
trnR-ACG gene − 128298 128371 74 Locate
rrn5 gene − 128615 128735 121 Locate
rrn4.5 gene − 128996 129098 103 Locate
rrn23 gene − 129198 132007 2810 Locate
trnA-UGC gene − 132167 133050 884 Locate
trnI-GAU gene − 133115 134133 1019 Locate
rrn16 gene − 134436 135926 1491 Locate
trnV-GAC gene − 136153 136224 72 Locate
rps12 gene + 137828 138618 791 Locate
rps7 gene + 138672 139139 468 Locate
ndhB gene + 139458 141611 2154 Locate
trnL-CAA gene + 142188 142268 81 Locate
ycf2 gene − 142852 149709 6858 Locate
trnI-CAU gene + 149798 149871 74 Locate
rpl23 gene + 150037 150318 282 Locate
rpl2 gene + 150337 151825 1489 Locate
Status Available
Accession PP357163.1
Length 151,928 bp
GC content 37.9%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources